CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226539

Assay name L9SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
365.4 100.0 404.6 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
356.3 100.0 701.0 At4g02270 828083 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
196.7 100.0 168.7 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
190.7 100.0 78.5 At3g07600 819951 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV O.I. C.G. H.G.
185.8 100.0 1879.6 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
163.8 99.9 90.8 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
159.0 99.9 357.6 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV O.I. C.G. H.G.
152.9 99.9 126.2 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. O.I. C.G. H.G.
146.0 99.9 79.9 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
143.7 99.9 91.1 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
135.6 99.9 177.9 At5g28630 832966 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
128.3 99.9 134.5 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
123.0 99.9 45.5 At5g66815 836815 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
114.5 99.9 33.1 At1g30850 839969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
106.1 99.9 60.4 At2g20520 816574 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) fasciclin-like arabinogalactan-protein 6 (Fla6) O.I. C.G. H.G.
106.0 99.9 89.8 At5g64900 836613 PROPEP1 Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response. O.I. C.G. H.G.
102.1 99.9 60.4 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
99.8 99.9 297.2 At1g30870 839971 cationic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
95.5 99.9 152.2 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
93.7 99.9 47.8 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
90.8 99.9 15.8 At1g01660 839461 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV O.I. C.G. H.G.
90.7 99.9 137.1 At5g12880 831128 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
90.4 99.9 537.7 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
83.2 99.9 118.2 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
76.8 99.9 316.2 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB O.I. C.G. H.G.
75.4 99.9 92.1 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
75.1 99.9 133.3 At2g21100 816645 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
72.5 99.9 28.0 At5g14330 831283 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
70.3 99.9 65.0 At5g64890 836612 PROPEP2 (Elicitor peptide 2 precursor) F:molecular_function unknown;P:response to jasmonic acid stimulus, defense response, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
68.1 99.9 25.1 At5g61650 836287 CYCP4 The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei. O.I. C.G. H.G.
63.1 99.8 108.4 At1g48930 841315 AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
62.2 99.8 27.3 At3g01730 821089 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
60.8 99.8 30.8 At2g03720 814899 MRH6 (morphogenesis of root hair 6) Involved in root hair development O.I. C.G. H.G.
59.8 99.8 60.0 At4g37290 829883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
57.4 99.8 1393.4 At3g13520 820554 AGP12 (ARABINOGALACTAN PROTEIN 12) Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling. O.I. C.G. H.G.
57.1 99.8 261.3 At4g30670 829190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.5 99.8 17.1 At5g40860 834087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
55.9 99.8 136.2 At2g18210 816336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
55.0 99.8 192.2 At5g67400 836876 peroxidase 73 (PER73) (P73) (PRXR11) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
53.8 99.8 40.3 At1g14550 838017 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
53.7 99.8 251.9 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
50.6 99.8 39.9 At3g02240 820386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
50.2 99.8 23.2 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO O.I. C.G. H.G.
49.5 99.8 2.4 At2g16820 816183 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
49.2 99.8 41.6 At1g30640 839944 protein kinase, putative F:protein kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
48.4 99.8 383.0 At1g19020 838483 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
47.7 99.8 23.7 At5g24313 832499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
47.3 99.8 6.4 At2g19210 816438 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
45.9 99.8 42.5 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. C.G. H.G.
45.7 99.8 508.4 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
45.7 99.8 15.0 At1g50930 841515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVB O.I. C.G. H.G.
45.0 99.8 31.1 At5g22530 832314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
44.5 99.8 297.3 At5g40450 834043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV O.I. C.G. H.G.
44.4 99.8 1263.5 At1g20450 838633 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. O.I. C.G. H.G.
42.0 99.8 228.7 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein O.I. C.G. H.G.
41.5 99.8 13.1 At4g25160 828619 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA O.I. C.G. H.G.
41.2 99.8 1446.3 At1g54410 841883 dehydrin family protein F:molecular_function unknown;P:response to water, response to stress;C:chloroplast;OMPFB O.I. C.G. H.G.
41.1 99.8 19.6 At3g61300 825302 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
40.7 99.8 115.9 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
40.5 99.8 219.8 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA O.I. C.G. H.G.
40.2 99.8 79.5 At1g62980 842601 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
39.8 99.8 155.0 At4g13660 827000 PRR2 (PINORESINOL REDUCTASE 2) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. O.I. C.G. H.G.
38.3 99.8 368.8 At3g05890 819758 RCI2B (RARE-COLD-INDUCIBLE 2B) F:unknown;P:response to cold;C:integral to membrane;BFPMO O.I. C.G. H.G.
38.3 99.8 294.5 At2g04780 815021 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) fasciclin-like arabinogalactan-protein 7 (Fla7) O.I. C.G. H.G.
38.3 99.8 18.6 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
36.9 99.7 402.8 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
35.3 99.7 37.5 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. O.I. C.G. H.G.
34.4 99.7 83.9 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. O.I. C.G. H.G.
34.0 99.7 86.3 At3g14340 820654 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.8 99.7 45.7 At1g08340 837354 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBA O.I. C.G. H.G.
33.0 99.7 68.4 At1g03920 839369 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA O.I. C.G. H.G.
32.9 99.7 26.8 At5g04310 830310 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
32.4 99.7 309.4 At2g19760 816495 PRF1 (PROFILIN 1) first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues. O.I. C.G. H.G.
32.0 99.7 8.6 At2g35870 - - O.I. C.G. H.G.
31.9 99.7 159.3 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
31.8 99.7 12.6 At3g18300 821359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.8 99.7 10.2 At4g04900 825829 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings. O.I. C.G. H.G.
29.7 99.7 12.2 At1g15030 838068 - Encodes a Cysteine-rich peptide (CRP) family protein O.I. C.G. H.G.
29.6 99.7 11.2 At1g48640 841286 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
29.0 99.7 27.9 At4g25380 828641 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
28.9 99.7 30.0 At2g40160 818607 - F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.8 99.7 448.5 At3g22600 821832 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;POM O.I. C.G. H.G.
28.8 99.7 69.8 At5g57530 835857 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBO O.I. C.G. H.G.
28.8 99.7 14.2 At4g38830 830038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
28.5 99.7 70.6 At3g49960 824158 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
28.4 99.7 109.8 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
28.4 99.7 16.9 At2g44580 819066 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
28.4 99.7 7.4 At1g16440 838214 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA O.I. C.G. H.G.
28.3 99.7 69.3 At2g01880 814719 PAP7 (PURPLE ACID PHOSPHATASE 7) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF O.I. C.G. H.G.
28.2 99.7 226.2 At1g05240 839237 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB O.I. C.G. H.G.
28.1 99.7 59.7 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA O.I. C.G. H.G.
27.8 99.7 76.6 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
27.6 99.7 36.1 At4g05170 825865 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM O.I. C.G. H.G.
27.3 99.7 12.9 At5g23030 832367 TET12 (TETRASPANIN12) Member of TETRASPANIN family O.I. C.G. H.G.
26.9 99.7 25.1 At1g13830 837944 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA O.I. C.G. H.G.
26.7 99.7 14.0 At3g07070 819893 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
26.6 99.7 39.2 At4g19680 827712 IRT2 encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone. O.I. C.G. H.G.
26.5 99.7 11.3 At5g01060 831916 protein kinase family protein F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
25.9 99.7 27.4 At2g15350 816027 FUT10 (FUCOSYLTRANSFERASE 10) member of Glycosyltransferase Family- 37 O.I. C.G. H.G.
25.8 99.7 76.0 At3g05990 819770 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;POBMFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
365.4	100.0	404.6	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
356.3	100.0	701.0	At4g02270	828083	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
196.7	100.0	168.7	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
190.7	100.0	78.5	At3g07600	819951	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV	O.I.	C.G.	H.G.
185.8	100.0	1879.6	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
163.8	99.9	90.8	At3g10710	820240	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
159.0	99.9	357.6	At1g30750	839955	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV	O.I.	C.G.	H.G.
152.9	99.9	126.2	At1g12560	837813	ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.	O.I.	C.G.	H.G.
146.0	99.9	79.9	At5g58010	835913	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
143.7	99.9	91.1	At2g34910	818056	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
135.6	99.9	177.9	At5g28630	832966	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
128.3	99.9	134.5	At1g01750	839281	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
123.0	99.9	45.5	At5g66815	836815	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
114.5	99.9	33.1	At1g30850	839969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
106.1	99.9	60.4	At2g20520	816574	FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)	fasciclin-like arabinogalactan-protein 6 (Fla6)	O.I.	C.G.	H.G.
106.0	99.9	89.8	At5g64900	836613	PROPEP1	Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.	O.I.	C.G.	H.G.
102.1	99.9	60.4	At4g33730	829515	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
99.8	99.9	297.2	At1g30870	839971	cationic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
95.5	99.9	152.2	At1g71740	843504	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
93.7	99.9	47.8	At4g30320	829155	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
90.8	99.9	15.8	At1g01660	839461	U-box domain-containing protein	F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV	O.I.	C.G.	H.G.
90.7	99.9	137.1	At5g12880	831128	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
90.4	99.9	537.7	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
83.2	99.9	118.2	At5g35190	833473	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
76.8	99.9	316.2	At4g13580	826991	disease resistance-responsive family protein	F:molecular_function unknown;P:unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
75.4	99.9	92.1	At4g00680	828037	ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
75.1	99.9	133.3	At2g21100	816645	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
72.5	99.9	28.0	At5g14330	831283	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
70.3	99.9	65.0	At5g64890	836612	PROPEP2 (Elicitor peptide 2 precursor)	F:molecular_function unknown;P:response to jasmonic acid stimulus, defense response, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
68.1	99.9	25.1	At5g61650	836287	CYCP4	The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei.	O.I.	C.G.	H.G.
63.1	99.8	108.4	At1g48930	841315	AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
62.2	99.8	27.3	At3g01730	821089	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
60.8	99.8	30.8	At2g03720	814899	MRH6 (morphogenesis of root hair 6)	Involved in root hair development	O.I.	C.G.	H.G.
59.8	99.8	60.0	At4g37290	829883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
57.4	99.8	1393.4	At3g13520	820554	AGP12 (ARABINOGALACTAN PROTEIN 12)	Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling.	O.I.	C.G.	H.G.
57.1	99.8	261.3	At4g30670	829190	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.5	99.8	17.1	At5g40860	834087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
55.9	99.8	136.2	At2g18210	816336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
55.0	99.8	192.2	At5g67400	836876	peroxidase 73 (PER73) (P73) (PRXR11)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
53.8	99.8	40.3	At1g14550	838017	anionic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
53.7	99.8	251.9	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
50.6	99.8	39.9	At3g02240	820386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
50.2	99.8	23.2	At1g27740	839667	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO	O.I.	C.G.	H.G.
49.5	99.8	2.4	At2g16820	816183	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
49.2	99.8	41.6	At1g30640	839944	protein kinase, putative	F:protein kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
48.4	99.8	383.0	At1g19020	838483	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.7	99.8	23.7	At5g24313	832499	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
47.3	99.8	6.4	At2g19210	816438	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
45.9	99.8	42.5	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	C.G.	H.G.
45.7	99.8	508.4	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
45.7	99.8	15.0	At1g50930	841515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVB	O.I.	C.G.	H.G.
45.0	99.8	31.1	At5g22530	832314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
44.5	99.8	297.3	At5g40450	834043	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
44.4	99.8	1263.5	At1g20450	838633	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	O.I.	C.G.	H.G.
42.0	99.8	228.7	At3g62680	825442	PRP3 (PROLINE-RICH PROTEIN 3)	Proline-rich protein	O.I.	C.G.	H.G.
41.5	99.8	13.1	At4g25160	828619	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA	O.I.	C.G.	H.G.
41.2	99.8	1446.3	At1g54410	841883	dehydrin family protein	F:molecular_function unknown;P:response to water, response to stress;C:chloroplast;OMPFB	O.I.	C.G.	H.G.
41.1	99.8	19.6	At3g61300	825302	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
40.7	99.8	115.9	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
40.5	99.8	219.8	At4g30450	829168	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
40.2	99.8	79.5	At1g62980	842601	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
39.8	99.8	155.0	At4g13660	827000	PRR2 (PINORESINOL REDUCTASE 2)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
38.3	99.8	368.8	At3g05890	819758	RCI2B (RARE-COLD-INDUCIBLE 2B)	F:unknown;P:response to cold;C:integral to membrane;BFPMO	O.I.	C.G.	H.G.
38.3	99.8	294.5	At2g04780	815021	FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)	fasciclin-like arabinogalactan-protein 7 (Fla7)	O.I.	C.G.	H.G.
38.3	99.8	18.6	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
36.9	99.7	402.8	At5g46890	834734	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
35.3	99.7	37.5	At4g34580	829610	COW1 (CAN OF WORMS1)	Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.	O.I.	C.G.	H.G.
34.4	99.7	83.9	At1g54970	841938	ATPRP1 (PROLINE-RICH PROTEIN 1)	encodes a proline-rich protein that is specifically expressed in the root.	O.I.	C.G.	H.G.
34.0	99.7	86.3	At3g14340	820654	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.8	99.7	45.7	At1g08340	837354	rac GTPase activating protein, putative	F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBA	O.I.	C.G.	H.G.
33.0	99.7	68.4	At1g03920	839369	protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA	O.I.	C.G.	H.G.
32.9	99.7	26.8	At5g04310	830310	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
32.4	99.7	309.4	At2g19760	816495	PRF1 (PROFILIN 1)	first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues.	O.I.	C.G.	H.G.
32.0	99.7	8.6	At2g35870		-	-	O.I.	C.G.	H.G.
31.9	99.7	159.3	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
31.8	99.7	12.6	At3g18300	821359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.8	99.7	10.2	At4g04900	825829	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.	O.I.	C.G.	H.G.
29.7	99.7	12.2	At1g15030	838068	-	Encodes a Cysteine-rich peptide (CRP) family protein	O.I.	C.G.	H.G.
29.6	99.7	11.2	At1g48640	841286	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
29.0	99.7	27.9	At4g25380	828641	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
28.9	99.7	30.0	At2g40160	818607	-	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.8	99.7	448.5	At3g22600	821832	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;POM	O.I.	C.G.	H.G.
28.8	99.7	69.8	At5g57530	835857	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBO	O.I.	C.G.	H.G.
28.8	99.7	14.2	At4g38830	830038	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
28.5	99.7	70.6	At3g49960	824158	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
28.4	99.7	109.8	At2g42760	818876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
28.4	99.7	16.9	At2g44580	819066	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
28.4	99.7	7.4	At1g16440	838214	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA	O.I.	C.G.	H.G.
28.3	99.7	69.3	At2g01880	814719	PAP7 (PURPLE ACID PHOSPHATASE 7)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF	O.I.	C.G.	H.G.
28.2	99.7	226.2	At1g05240	839237	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB	O.I.	C.G.	H.G.
28.1	99.7	59.7	At3g05920	819761	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA	O.I.	C.G.	H.G.
27.8	99.7	76.6	At1g61590	842455	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
27.6	99.7	36.1	At4g05170	825865	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM	O.I.	C.G.	H.G.
27.3	99.7	12.9	At5g23030	832367	TET12 (TETRASPANIN12)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
26.9	99.7	25.1	At1g13830	837944	beta-1,3-glucanase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA	O.I.	C.G.	H.G.
26.7	99.7	14.0	At3g07070	819893	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
26.6	99.7	39.2	At4g19680	827712	IRT2	encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.	O.I.	C.G.	H.G.
26.5	99.7	11.3	At5g01060	831916	protein kinase family protein	F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
25.9	99.7	27.4	At2g15350	816027	FUT10 (FUCOSYLTRANSFERASE 10)	member of Glycosyltransferase Family- 37	O.I.	C.G.	H.G.
25.8	99.7	76.0	At3g05990	819770	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;POBMFA	O.I.	C.G.	H.G.

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GSM ID	GSM226539
Assay name	L9SB
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226539 Assay name L9SB GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226539

Assay name L9SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function