CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226538

Assay name L8SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1370.5 100.0 151.8 At5g66815 836815 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
381.8 100.0 114.6 At2g18800 816395 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
302.7 100.0 490.5 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
265.4 100.0 90.2 At1g18140 838393 LAC1 (Laccase 1) putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). O.I. C.G. H.G.
202.9 100.0 15.5 At2g23440 816876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
194.8 100.0 186.5 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
183.8 100.0 37.3 At5g55020 835593 MYB120 (MYB DOMAIN PROTEIN 120) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120). O.I. C.G. H.G.
171.4 100.0 70.4 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
166.5 100.0 383.8 At1g30870 839971 cationic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
164.8 100.0 152.5 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
160.7 99.9 153.8 At2g44300 819038 lipid transfer protein-related F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
150.5 99.9 46.1 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
148.3 99.9 221.2 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
144.6 99.9 47.6 At2g03720 814899 MRH6 (morphogenesis of root hair 6) Involved in root hair development O.I. C.G. H.G.
130.0 99.9 18.7 At2g34210 817982 structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV O.I. C.G. H.G.
128.3 99.9 106.0 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
120.5 99.9 95.7 At5g64900 836613 PROPEP1 Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response. O.I. C.G. H.G.
114.2 99.9 26.4 At5g23030 832367 TET12 (TETRASPANIN12) Member of TETRASPANIN family O.I. C.G. H.G.
110.4 99.9 32.7 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
107.4 99.9 28.2 At3g07070 819893 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
106.9 99.9 6.5 At4g04420 3769951 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
105.1 99.9 70.4 At4g05170 825865 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM O.I. C.G. H.G.
104.0 99.9 735.2 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). O.I. C.G. H.G.
104.0 99.9 15.5 At4g03830 825690 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA O.I. C.G. H.G.
101.7 99.9 22.4 At1g09170 837437 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPB O.I. C.G. H.G.
99.8 99.9 10.9 At2g18640 816379 GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4) Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase O.I. C.G. H.G.
94.8 99.9 99.4 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. O.I. C.G. H.G.
94.3 99.9 102.9 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
91.8 99.9 78.9 At5g57540 835858 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
89.6 99.9 56.5 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
87.4 99.9 619.9 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
86.3 99.9 19.7 At2g26950 817236 AtMYB104 (myb domain protein 104) Member of the R2R3 factor gene family. O.I. C.G. H.G.
86.0 99.9 18.8 At4g25160 828619 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA O.I. C.G. H.G.
82.8 99.9 27.3 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
81.1 99.9 509.5 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
77.5 99.9 59.5 At5g26731 832715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
76.8 99.9 325.4 At4g02270 828083 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
74.5 99.9 38.5 At2g22850 816816 AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF O.I. C.G. H.G.
74.4 99.9 67.0 At2g16980 816201 tetracycline transporter F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF O.I. C.G. H.G.
72.4 99.9 640.0 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
71.8 99.9 44.0 At5g24880 832557 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
71.7 99.9 109.8 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
71.6 99.9 48.2 At2g23560 816888 MES7 (METHYL ESTERASE 7) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, and methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeGA4, or MEGA9 in vitro. MES7 appears to be involved in MeSA hydrolysis in planta. Expression of MES7 can restore systemic acquired resistance in SAR-deficient tobacco plants. O.I. C.G. H.G.
70.9 99.9 27.6 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO O.I. C.G. H.G.
70.4 99.9 18.0 At2g42440 818844 - F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
69.4 99.9 81.3 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. O.I. C.G. H.G.
68.0 99.9 6.2 At2g05270 815075 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
67.9 99.9 18.4 At3g18300 821359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
67.5 99.8 61.9 At2g41970 818797 protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
67.2 99.8 57.6 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
66.1 99.8 18.5 At5g40860 834087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
63.3 99.8 26.2 At3g48940 824055 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OPBMFA O.I. C.G. H.G.
62.4 99.8 781.7 At2g44790 819088 UCC2 (UCLACYANIN 2) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. O.I. C.G. H.G.
62.0 99.8 1085.4 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
61.5 99.8 11.7 At5g53410 835422 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
61.3 99.8 27.6 At1g77020 844038 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
60.6 99.8 31.7 At3g29780 822684 RALFL27 (ralf-like 27) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
60.5 99.8 31.2 At2g15300 816019 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
60.0 99.8 368.4 At2g04780 815021 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) fasciclin-like arabinogalactan-protein 7 (Fla7) O.I. C.G. H.G.
59.6 99.8 19.2 At2g46840 819297 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
58.7 99.8 30.2 At1g68430 843172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
58.4 99.8 265.9 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
58.3 99.8 13.7 At2g02270 3768666 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
58.2 99.8 638.1 At3g22600 821832 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;POM O.I. C.G. H.G.
58.1 99.8 147.4 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
57.2 99.8 14.0 At4g04900 825829 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings. O.I. C.G. H.G.
56.9 99.8 25.9 At5g23400 832405 disease resistance family protein / LRR family protein F:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAV O.I. C.G. H.G.
56.4 99.8 31.8 At1g76210 843954 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.2 99.8 14.1 At2g24620 816998 S-locus glycoprotein family protein F:unknown;P:recognition of pollen;C:cellular_component unknown;P O.I. C.G. H.G.
55.8 99.8 36.9 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
55.7 99.8 26.5 At1g33220 840216 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
55.4 99.8 3.9 At4g07550 3770366 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
54.8 99.8 7.2 At3g31410 822905 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
54.4 99.8 22.1 At3g46760 823829 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
54.2 99.8 10.0 At3g14250 820645 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
54.1 99.8 29.9 At5g26930 832751 zinc finger (GATA type) family protein F:transcription factor activity, sequence-specific DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
53.3 99.8 12.9 At5g12380 831113 annexin, putative F:calcium-dependent phospholipid binding, calcium ion binding;P:unknown;C:unknown;MPOF O.I. C.G. H.G.
53.1 99.8 570.9 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
53.1 99.8 23.4 At2g04680 815011 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
52.9 99.8 16.0 At5g45640 834604 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMA O.I. C.G. H.G.
52.5 99.8 16.2 At5g15900 831447 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
52.4 99.8 250.3 At4g30670 829190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
51.0 99.8 22.4 At5g43230 834341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB O.I. C.G. H.G.
50.1 99.8 21.9 At1g30850 839969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.0 99.8 52.3 At3g56230 824789 speckle-type POZ protein-related F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
50.0 99.8 8.4 At1g17910 838370 wall-associated kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
49.0 99.8 54.9 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
48.4 99.8 142.0 At3g27200 822339 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF O.I. C.G. H.G.
47.6 99.8 14.4 At5g07450 830636 CYCP4 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB O.I. C.G. H.G.
47.0 99.8 15.2 At1g50930 841515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVB O.I. C.G. H.G.
46.8 99.8 38.0 At1g30990 839985 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
46.5 99.8 370.7 At2g19760 816495 PRF1 (PROFILIN 1) first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues. O.I. C.G. H.G.
46.3 99.8 100.9 At5g40980 834100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
46.3 99.8 22.8 At3g10580 820225 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
46.2 99.8 11.4 At2g13920 3768459 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
45.8 99.8 238.7 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein O.I. C.G. H.G.
45.8 99.8 14.2 At4g35660 829718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBO O.I. C.G. H.G.
45.6 99.8 148.1 At1g32100 840102 PRR1 (PINORESINOL REDUCTASE 1) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol. O.I. C.G. H.G.
45.6 99.8 20.4 At1g52660 841698 ATP binding F:ATP binding;P:defense response, apoptosis;C:unknown;PBOAM O.I. C.G. H.G.
45.6 99.8 9.1 At5g32600 833241 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1370.5	100.0	151.8	At5g66815	836815	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
381.8	100.0	114.6	At2g18800	816395	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
302.7	100.0	490.5	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
265.4	100.0	90.2	At1g18140	838393	LAC1 (Laccase 1)	putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).	O.I.	C.G.	H.G.
202.9	100.0	15.5	At2g23440	816876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
194.8	100.0	186.5	At2g47540	819367	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
183.8	100.0	37.3	At5g55020	835593	MYB120 (MYB DOMAIN PROTEIN 120)	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120).	O.I.	C.G.	H.G.
171.4	100.0	70.4	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
166.5	100.0	383.8	At1g30870	839971	cationic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
164.8	100.0	152.5	At1g01750	839281	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
160.7	99.9	153.8	At2g44300	819038	lipid transfer protein-related	F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
150.5	99.9	46.1	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
148.3	99.9	221.2	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
144.6	99.9	47.6	At2g03720	814899	MRH6 (morphogenesis of root hair 6)	Involved in root hair development	O.I.	C.G.	H.G.
130.0	99.9	18.7	At2g34210	817982	structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor	F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV	O.I.	C.G.	H.G.
128.3	99.9	106.0	At4g11210	826723	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
120.5	99.9	95.7	At5g64900	836613	PROPEP1	Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.	O.I.	C.G.	H.G.
114.2	99.9	26.4	At5g23030	832367	TET12 (TETRASPANIN12)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
110.4	99.9	32.7	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
107.4	99.9	28.2	At3g07070	819893	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
106.9	99.9	6.5	At4g04420	3769951	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
105.1	99.9	70.4	At4g05170	825865	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM	O.I.	C.G.	H.G.
104.0	99.9	735.2	At5g56540	835755	AGP14 (ARABINOGALACTAN PROTEIN 14)	Encodes arabinogalactan protein (AGP14).	O.I.	C.G.	H.G.
104.0	99.9	15.5	At4g03830	825690	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA	O.I.	C.G.	H.G.
101.7	99.9	22.4	At1g09170	837437	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPB	O.I.	C.G.	H.G.
99.8	99.9	10.9	At2g18640	816379	GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4)	Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase	O.I.	C.G.	H.G.
94.8	99.9	99.4	At1g12560	837813	ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.	O.I.	C.G.	H.G.
94.3	99.9	102.9	At4g00680	828037	ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
91.8	99.9	78.9	At5g57540	835858	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
89.6	99.9	56.5	At4g33730	829515	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
87.4	99.9	619.9	At5g46890	834734	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
86.3	99.9	19.7	At2g26950	817236	AtMYB104 (myb domain protein 104)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
86.0	99.9	18.8	At4g25160	828619	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA	O.I.	C.G.	H.G.
82.8	99.9	27.3	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
81.1	99.9	509.5	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
77.5	99.9	59.5	At5g26731	832715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
76.8	99.9	325.4	At4g02270	828083	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
74.5	99.9	38.5	At2g22850	816816	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF	O.I.	C.G.	H.G.
74.4	99.9	67.0	At2g16980	816201	tetracycline transporter	F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF	O.I.	C.G.	H.G.
72.4	99.9	640.0	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
71.8	99.9	44.0	At5g24880	832557	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
71.7	99.9	109.8	At5g35190	833473	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
71.6	99.9	48.2	At2g23560	816888	MES7 (METHYL ESTERASE 7)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, and methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeGA4, or MEGA9 in vitro. MES7 appears to be involved in MeSA hydrolysis in planta. Expression of MES7 can restore systemic acquired resistance in SAR-deficient tobacco plants.	O.I.	C.G.	H.G.
70.9	99.9	27.6	At1g27740	839667	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO	O.I.	C.G.	H.G.
70.4	99.9	18.0	At2g42440	818844	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
69.4	99.9	81.3	At5g49270	834987	SHV2 (SHAVEN 2)	Involved in successfully establishing tip growth in root hairs.	O.I.	C.G.	H.G.
68.0	99.9	6.2	At2g05270	815075	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
67.9	99.9	18.4	At3g18300	821359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
67.5	99.8	61.9	At2g41970	818797	protein kinase, putative	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
67.2	99.8	57.6	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
66.1	99.8	18.5	At5g40860	834087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
63.3	99.8	26.2	At3g48940	824055	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OPBMFA	O.I.	C.G.	H.G.
62.4	99.8	781.7	At2g44790	819088	UCC2 (UCLACYANIN 2)	Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	O.I.	C.G.	H.G.
62.0	99.8	1085.4	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
61.5	99.8	11.7	At5g53410	835422	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
61.3	99.8	27.6	At1g77020	844038	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
60.6	99.8	31.7	At3g29780	822684	RALFL27 (ralf-like 27)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
60.5	99.8	31.2	At2g15300	816019	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
60.0	99.8	368.4	At2g04780	815021	FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)	fasciclin-like arabinogalactan-protein 7 (Fla7)	O.I.	C.G.	H.G.
59.6	99.8	19.2	At2g46840	819297	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
58.7	99.8	30.2	At1g68430	843172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
58.4	99.8	265.9	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
58.3	99.8	13.7	At2g02270	3768666	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
58.2	99.8	638.1	At3g22600	821832	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;POM	O.I.	C.G.	H.G.
58.1	99.8	147.4	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
57.2	99.8	14.0	At4g04900	825829	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.	O.I.	C.G.	H.G.
56.9	99.8	25.9	At5g23400	832405	disease resistance family protein / LRR family protein	F:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAV	O.I.	C.G.	H.G.
56.4	99.8	31.8	At1g76210	843954	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.2	99.8	14.1	At2g24620	816998	S-locus glycoprotein family protein	F:unknown;P:recognition of pollen;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.8	99.8	36.9	At4g30320	829155	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
55.7	99.8	26.5	At1g33220	840216	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
55.4	99.8	3.9	At4g07550	3770366	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
54.8	99.8	7.2	At3g31410	822905	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
54.4	99.8	22.1	At3g46760	823829	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
54.2	99.8	10.0	At3g14250	820645	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
54.1	99.8	29.9	At5g26930	832751	zinc finger (GATA type) family protein	F:transcription factor activity, sequence-specific DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
53.3	99.8	12.9	At5g12380	831113	annexin, putative	F:calcium-dependent phospholipid binding, calcium ion binding;P:unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
53.1	99.8	570.9	At4g12510	826863	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
53.1	99.8	23.4	At2g04680	815011	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
52.9	99.8	16.0	At5g45640	834604	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMA	O.I.	C.G.	H.G.
52.5	99.8	16.2	At5g15900	831447	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
52.4	99.8	250.3	At4g30670	829190	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
51.0	99.8	22.4	At5g43230	834341	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
50.1	99.8	21.9	At1g30850	839969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.0	99.8	52.3	At3g56230	824789	speckle-type POZ protein-related	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
50.0	99.8	8.4	At1g17910	838370	wall-associated kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
49.0	99.8	54.9	At5g22410	832302	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
48.4	99.8	142.0	At3g27200	822339	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF	O.I.	C.G.	H.G.
47.6	99.8	14.4	At5g07450	830636	CYCP4	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB	O.I.	C.G.	H.G.
47.0	99.8	15.2	At1g50930	841515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFVB	O.I.	C.G.	H.G.
46.8	99.8	38.0	At1g30990	839985	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.5	99.8	370.7	At2g19760	816495	PRF1 (PROFILIN 1)	first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues.	O.I.	C.G.	H.G.
46.3	99.8	100.9	At5g40980	834100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
46.3	99.8	22.8	At3g10580	820225	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
46.2	99.8	11.4	At2g13920	3768459	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
45.8	99.8	238.7	At3g62680	825442	PRP3 (PROLINE-RICH PROTEIN 3)	Proline-rich protein	O.I.	C.G.	H.G.
45.8	99.8	14.2	At4g35660	829718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBO	O.I.	C.G.	H.G.
45.6	99.8	148.1	At1g32100	840102	PRR1 (PINORESINOL REDUCTASE 1)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
45.6	99.8	20.4	At1g52660	841698	ATP binding	F:ATP binding;P:defense response, apoptosis;C:unknown;PBOAM	O.I.	C.G.	H.G.
45.6	99.8	9.1	At5g32600	833241	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.

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GSM ID	GSM226538
Assay name	L8SB
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226538 Assay name L8SB GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226538

Assay name L8SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function