CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226536

Assay name L6SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
302.4 100.0 124.6 At4g25250 828628 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
292.6 100.0 330.9 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
249.1 100.0 95.9 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM O.I. C.G. H.G.
137.9 99.9 741.1 At1g04040 839325 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOM O.I. C.G. H.G.
113.0 99.9 120.8 At2g47270 819340 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
109.2 99.9 37.1 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. O.I. C.G. H.G.
108.4 99.9 149.9 At5g12880 831128 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
105.2 99.9 55.2 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
96.8 99.9 1356.8 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
89.0 99.9 92.6 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
88.6 99.9 56.8 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
85.9 99.9 136.8 At1g08500 837371 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
83.5 99.9 18.1 At5g38790 833870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
76.3 99.9 70.2 At2g39040 818490 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
75.8 99.9 410.9 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
75.2 99.9 170.5 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
73.7 99.9 511.6 At3g05890 819758 RCI2B (RARE-COLD-INDUCIBLE 2B) F:unknown;P:response to cold;C:integral to membrane;BFPMO O.I. C.G. H.G.
68.5 99.9 336.7 At1g77330 844069 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) O.I. C.G. H.G.
65.7 99.8 44.1 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
65.1 99.8 225.8 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
64.8 99.8 533.6 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
59.2 99.8 45.1 At2g18800 816395 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
56.3 99.8 541.1 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). O.I. C.G. H.G.
54.9 99.8 208.9 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
53.6 99.8 86.9 At1g13590 837920 ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR) Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. O.I. C.G. H.G.
51.6 99.8 147.7 At5g20660 832189 24 kDa vacuolar protein, putative F:peptidase activity;P:proteolysis;C:unknown;MBFOPA O.I. C.G. H.G.
51.0 99.8 403.9 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
50.4 99.8 30.3 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
49.7 99.8 51.1 At1g22335 - - O.I. C.G. H.G.
49.6 99.8 551.4 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
48.7 99.8 546.4 At2g45070 819114 SEC61 BETA Sec61 Beta Subunit O.I. C.G. H.G.
47.6 99.8 356.0 At5g65390 836664 AGP7 F:unknown;P:unknown;C:anchored to membrane;BMOPFVA O.I. C.G. H.G.
46.2 99.8 366.0 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
44.6 99.8 107.2 At2g37975 818375 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
42.6 99.8 11.9 At2g02620 814791 DC1 domain-containing protein / PHD finger protein-related F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM O.I. C.G. H.G.
42.4 99.8 54.0 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
41.7 99.8 58.8 At5g42860 834297 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMB O.I. C.G. H.G.
41.0 99.8 304.8 At2g04780 815021 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) fasciclin-like arabinogalactan-protein 7 (Fla7) O.I. C.G. H.G.
39.1 99.8 119.2 At2g35880 818161 - F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
38.2 99.8 236.5 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
36.8 99.7 225.3 At1g62790 842578 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
36.1 99.7 165.3 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
35.9 99.7 23.9 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
34.2 99.7 69.7 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
31.3 99.7 22.7 At1g61840 842481 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
31.1 99.7 17.7 At4g27590 828869 copper-binding protein-related F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
29.4 99.7 866.2 At4g39200 830075 40S ribosomal protein S25 (RPS25E) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA O.I. C.G. H.G.
29.2 99.7 1109.4 At1g55330 841979 AGP21 Encodes a putative arabinogalactan-protein (AGP21). O.I. C.G. H.G.
28.6 99.7 130.2 At1g19835 838571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
28.3 99.7 96.7 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
27.9 99.7 38.1 At1g28070 839700 - F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.5 99.7 19.2 At3g21680 821722 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
27.4 99.7 326.6 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
27.4 99.7 56.3 At4g21310 827879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.2 99.7 93.7 At3g07010 819886 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
26.6 99.7 48.3 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
26.5 99.7 8.9 At5g54030 835486 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
26.4 99.7 198.0 At3g47836 823939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.3 99.7 235.2 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
26.3 99.7 22.0 At5g35670 833540 iqd33 (IQ-domain 33) F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOF O.I. C.G. H.G.
26.2 99.7 460.2 At1g03870 839384 FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9) fasciclin-like arabinogalactan-protein 9 (Fla9) O.I. C.G. H.G.
25.8 99.7 171.3 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
24.6 99.6 96.8 At5g60950 836216 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.0 99.6 158.3 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
23.9 99.6 95.1 At5g15910 831448 dehydrogenase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:mitochondrion, plastid;BOPFMAV O.I. C.G. H.G.
23.6 99.6 143.9 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.7 99.6 179.5 At1g14450 838007 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF O.I. C.G. H.G.
22.5 99.6 63.3 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.0 99.6 64.2 At1g63220 842627 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
21.8 99.6 91.3 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
21.6 99.6 63.6 At5g41560 834158 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MP O.I. C.G. H.G.
21.6 99.6 14.4 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
21.5 99.6 52.1 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA O.I. C.G. H.G.
21.4 99.6 100.3 At1g74210 843761 glycerophosphoryl diester phosphodiesterase family protein F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:vacuole;BOMPFAV O.I. C.G. H.G.
21.4 99.6 66.9 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
21.1 99.6 190.3 At2g22425 816774 peptidase F:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPO O.I. C.G. H.G.
20.9 99.6 266.9 At5g05370 830419 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P O.I. C.G. H.G.
20.4 99.6 79.0 At4g16660 827367 heat shock protein 70, putative / HSP70, putative F:ATP binding;P:unknown;C:plasma membrane, chloroplast;OBMFPAV O.I. C.G. H.G.
20.3 99.6 64.0 At3g60540 825225 sec61beta family protein F:protein transporter activity;P:protein transport;C:unknown;MFPO O.I. C.G. H.G.
20.2 99.6 449.4 At2g22170 816751 lipid-associated family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO O.I. C.G. H.G.
19.5 99.6 156.1 At3g54960 824661 ATPDIL1-3 (PDI-LIKE 1-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.
19.2 99.6 13.1 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
19.1 99.6 111.4 At2g34070 817968 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.0 99.5 32.7 At1g05650 837072 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
18.7 99.5 794.4 At3g13520 820554 AGP12 (ARABINOGALACTAN PROTEIN 12) Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling. O.I. C.G. H.G.
18.7 99.5 13.0 At2g37440 818321 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
18.5 99.5 100.2 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.4 99.5 210.1 At3g47810 823935 MAG1 (MAIGO 1) Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. O.I. C.G. H.G.
18.4 99.5 25.2 At1g62045 842500 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.3 99.5 359.7 At5g50460 835114 protein transport protein SEC61 gamma subunit, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport, protein targeting;C:membrane;MFOPA O.I. C.G. H.G.
18.3 99.5 227.2 At2g31490 817707 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P O.I. C.G. H.G.
18.3 99.5 48.2 At5g08130 830708 BIM1 Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). O.I. C.G. H.G.
18.3 99.5 47.2 At5g46230 834665 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.9 99.5 64.3 At2g24040 816938 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO O.I. C.G. H.G.
17.1 99.5 14.4 At3g53650 824533 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB O.I. C.G. H.G.
16.8 99.5 39.9 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. O.I. C.G. H.G.
16.7 99.5 18.9 At1g57560 842131 AtMYB50 (myb domain protein 50) Member of the R2R3 factor gene family. O.I. C.G. H.G.
16.6 99.5 324.5 At4g26970 828805 aconitate hydratase/ copper ion binding F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP O.I. C.G. H.G.
16.6 99.5 315.1 At3g53990 824566 universal stress protein (USP) family protein F:molecular_function unknown;P:response to cold, response to stress;C:cellular_component unknown;BPAOFM O.I. C.G. H.G.
16.4 99.5 164.2 At4g09030 826482 AGP10 (ARABINOGALACTAN PROTEIN 10) Encodes arabinogalactan protein (AGP10). O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
302.4	100.0	124.6	At4g25250	828628	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
292.6	100.0	330.9	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
249.1	100.0	95.9	At3g49840	824146	unknown protein	F:unknown;P:unknown;C:endomembrane system;PBM	O.I.	C.G.	H.G.
137.9	99.9	741.1	At1g04040	839325	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOM	O.I.	C.G.	H.G.
113.0	99.9	120.8	At2g47270	819340	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
109.2	99.9	37.1	At5g15150	831367	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.	O.I.	C.G.	H.G.
108.4	99.9	149.9	At5g12880	831128	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
105.2	99.9	55.2	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
96.8	99.9	1356.8	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
89.0	99.9	92.6	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
88.6	99.9	56.8	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
85.9	99.9	136.8	At1g08500	837371	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
83.5	99.9	18.1	At5g38790	833870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
76.3	99.9	70.2	At2g39040	818490	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
75.8	99.9	410.9	At5g53250	835406	AGP22 (ARABINOGALACTAN PROTEIN 22)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
75.2	99.9	170.5	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
73.7	99.9	511.6	At3g05890	819758	RCI2B (RARE-COLD-INDUCIBLE 2B)	F:unknown;P:response to cold;C:integral to membrane;BFPMO	O.I.	C.G.	H.G.
68.5	99.9	336.7	At1g77330	844069	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)	O.I.	C.G.	H.G.
65.7	99.8	44.1	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
65.1	99.8	225.8	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
64.8	99.8	533.6	At5g46890	834734	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
59.2	99.8	45.1	At2g18800	816395	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
56.3	99.8	541.1	At5g56540	835755	AGP14 (ARABINOGALACTAN PROTEIN 14)	Encodes arabinogalactan protein (AGP14).	O.I.	C.G.	H.G.
54.9	99.8	208.9	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
53.6	99.8	86.9	At1g13590	837920	ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)	Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.	O.I.	C.G.	H.G.
51.6	99.8	147.7	At5g20660	832189	24 kDa vacuolar protein, putative	F:peptidase activity;P:proteolysis;C:unknown;MBFOPA	O.I.	C.G.	H.G.
51.0	99.8	403.9	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
50.4	99.8	30.3	At1g27140	839603	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
49.7	99.8	51.1	At1g22335		-	-	O.I.	C.G.	H.G.
49.6	99.8	551.4	At4g12510	826863	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
48.7	99.8	546.4	At2g45070	819114	SEC61 BETA	Sec61 Beta Subunit	O.I.	C.G.	H.G.
47.6	99.8	356.0	At5g65390	836664	AGP7	F:unknown;P:unknown;C:anchored to membrane;BMOPFVA	O.I.	C.G.	H.G.
46.2	99.8	366.0	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
44.6	99.8	107.2	At2g37975	818375	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
42.6	99.8	11.9	At2g02620	814791	DC1 domain-containing protein / PHD finger protein-related	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM	O.I.	C.G.	H.G.
42.4	99.8	54.0	At5g52280	835304	protein transport protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
41.7	99.8	58.8	At5g42860	834297	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMB	O.I.	C.G.	H.G.
41.0	99.8	304.8	At2g04780	815021	FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)	fasciclin-like arabinogalactan-protein 7 (Fla7)	O.I.	C.G.	H.G.
39.1	99.8	119.2	At2g35880	818161	-	F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
38.2	99.8	236.5	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
36.8	99.7	225.3	At1g62790	842578	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
36.1	99.7	165.3	At1g67330	843054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
35.9	99.7	23.9	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
34.2	99.7	69.7	At4g01630	827983	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
31.3	99.7	22.7	At1g61840	842481	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
31.1	99.7	17.7	At4g27590	828869	copper-binding protein-related	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.4	99.7	866.2	At4g39200	830075	40S ribosomal protein S25 (RPS25E)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA	O.I.	C.G.	H.G.
29.2	99.7	1109.4	At1g55330	841979	AGP21	Encodes a putative arabinogalactan-protein (AGP21).	O.I.	C.G.	H.G.
28.6	99.7	130.2	At1g19835	838571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
28.3	99.7	96.7	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
27.9	99.7	38.1	At1g28070	839700	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.5	99.7	19.2	At3g21680	821722	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.4	99.7	326.6	At4g30170	829140	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
27.4	99.7	56.3	At4g21310	827879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.2	99.7	93.7	At3g07010	819886	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
26.6	99.7	48.3	At4g11210	826723	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
26.5	99.7	8.9	At5g54030	835486	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
26.4	99.7	198.0	At3g47836	823939	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.3	99.7	235.2	At5g03345	831867	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
26.3	99.7	22.0	At5g35670	833540	iqd33 (IQ-domain 33)	F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOF	O.I.	C.G.	H.G.
26.2	99.7	460.2	At1g03870	839384	FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)	fasciclin-like arabinogalactan-protein 9 (Fla9)	O.I.	C.G.	H.G.
25.8	99.7	171.3	At2g42570	818857	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
24.6	99.6	96.8	At5g60950	836216	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.0	99.6	158.3	At1g12080	837760	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
23.9	99.6	95.1	At5g15910	831448	dehydrogenase-related	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:mitochondrion, plastid;BOPFMAV	O.I.	C.G.	H.G.
23.6	99.6	143.9	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.7	99.6	179.5	At1g14450	838007	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF	O.I.	C.G.	H.G.
22.5	99.6	63.3	At2g47540	819367	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.0	99.6	64.2	At1g63220	842627	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
21.8	99.6	91.3	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
21.6	99.6	63.6	At5g41560	834158	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MP	O.I.	C.G.	H.G.
21.6	99.6	14.4	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
21.5	99.6	52.1	At3g05920	819761	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA	O.I.	C.G.	H.G.
21.4	99.6	100.3	At1g74210	843761	glycerophosphoryl diester phosphodiesterase family protein	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:vacuole;BOMPFAV	O.I.	C.G.	H.G.
21.4	99.6	66.9	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
21.1	99.6	190.3	At2g22425	816774	peptidase	F:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPO	O.I.	C.G.	H.G.
20.9	99.6	266.9	At5g05370	830419	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P	O.I.	C.G.	H.G.
20.4	99.6	79.0	At4g16660	827367	heat shock protein 70, putative / HSP70, putative	F:ATP binding;P:unknown;C:plasma membrane, chloroplast;OBMFPAV	O.I.	C.G.	H.G.
20.3	99.6	64.0	At3g60540	825225	sec61beta family protein	F:protein transporter activity;P:protein transport;C:unknown;MFPO	O.I.	C.G.	H.G.
20.2	99.6	449.4	At2g22170	816751	lipid-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO	O.I.	C.G.	H.G.
19.5	99.6	156.1	At3g54960	824661	ATPDIL1-3 (PDI-LIKE 1-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.
19.2	99.6	13.1	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
19.1	99.6	111.4	At2g34070	817968	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.0	99.5	32.7	At1g05650	837072	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
18.7	99.5	794.4	At3g13520	820554	AGP12 (ARABINOGALACTAN PROTEIN 12)	Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling.	O.I.	C.G.	H.G.
18.7	99.5	13.0	At2g37440	818321	endonuclease/exonuclease/phosphatase family protein	F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
18.5	99.5	100.2	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.4	99.5	210.1	At3g47810	823935	MAG1 (MAIGO 1)	Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.	O.I.	C.G.	H.G.
18.4	99.5	25.2	At1g62045	842500	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.3	99.5	359.7	At5g50460	835114	protein transport protein SEC61 gamma subunit, putative	F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport, protein targeting;C:membrane;MFOPA	O.I.	C.G.	H.G.
18.3	99.5	227.2	At2g31490	817707	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P	O.I.	C.G.	H.G.
18.3	99.5	48.2	At5g08130	830708	BIM1	Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).	O.I.	C.G.	H.G.
18.3	99.5	47.2	At5g46230	834665	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.9	99.5	64.3	At2g24040	816938	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO	O.I.	C.G.	H.G.
17.1	99.5	14.4	At3g53650	824533	histone H2B, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB	O.I.	C.G.	H.G.
16.8	99.5	39.9	At5g49270	834987	SHV2 (SHAVEN 2)	Involved in successfully establishing tip growth in root hairs.	O.I.	C.G.	H.G.
16.7	99.5	18.9	At1g57560	842131	AtMYB50 (myb domain protein 50)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
16.6	99.5	324.5	At4g26970	828805	aconitate hydratase/ copper ion binding	F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP	O.I.	C.G.	H.G.
16.6	99.5	315.1	At3g53990	824566	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to cold, response to stress;C:cellular_component unknown;BPAOFM	O.I.	C.G.	H.G.
16.4	99.5	164.2	At4g09030	826482	AGP10 (ARABINOGALACTAN PROTEIN 10)	Encodes arabinogalactan protein (AGP10).	O.I.	C.G.	H.G.

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GSM ID	GSM226536
Assay name	L6SB
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226536 Assay name L6SB GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226536

Assay name L6SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function