Microarray experiments to specifically-expressed genes

GSM ID GSM226534
Assay name L4SB
GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
159.999.9212.0At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
90.299.933.1At3g53650824533histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFBO.I.C.G.H.G.
74.299.9329.4At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
62.799.8127.1At2g37975818375-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
55.799.8146.7At1g16000838170unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
51.799.8563.3At2g45070819114SEC61 BETASec61 Beta SubunitO.I.C.G.H.G.
48.199.8562.9At2g2521081705960S ribosomal protein L39 (RPL39A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
45.899.830.9At3g09480820105histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFO.I.C.G.H.G.
35.099.715.3At5g57080835812unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.499.718.6At4g27590828869copper-binding protein-relatedF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
32.799.7237.0At2g22425816774peptidaseF:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPOO.I.C.G.H.G.
32.099.753.5At1g17560838332HLL (HUELLENLOS)Mutant shows abnormal ovule developmentO.I.C.G.H.G.
29.799.7112.0At5g2066083218924 kDa vacuolar protein, putativeF:peptidase activity;P:proteolysis;C:unknown;MBFOPAO.I.C.G.H.G.
29.299.7256.9At2g04780815021FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)fasciclin-like arabinogalactan-protein 7 (Fla7)O.I.C.G.H.G.
28.899.792.3At3g05230819687signal peptidase subunit family proteinF:peptidase activity;P:signal peptide processing;C:endoplasmic reticulum, cell wall;MFOPO.I.C.G.H.G.
28.499.752.3At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
26.499.7287.5At1g09200837440histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
25.899.733.0At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.899.717.5At3g62930825468glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
25.499.6477.4At4g3198582932960S ribosomal protein L39 (RPL39C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
25.499.6115.2At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
25.299.6193.2At3g47836823939unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.999.6278.0At4g29735829095unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
24.599.654.7At5g46230834665unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.199.6936.6At2g1973081649260S ribosomal protein L28 (RPL28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFOO.I.C.G.H.G.
22.499.6135.7At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.399.6216.6At5g03345831867-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
22.399.6104.0At5g54970835588unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.299.6138.5At3g06035819776unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PBO.I.C.G.H.G.
21.899.615.2At3g51410824304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
21.099.6401.6At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
20.799.613.1At5g52220835298-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
20.499.6422.7At5g59870836109HTA6Encodes HTA6, a histone H2A protein.O.I.C.G.H.G.
20.499.6105.0At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.499.627.3At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
19.999.6676.2At5g59690836090histone H4F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFVO.I.C.G.H.G.
19.499.6565.0At3g5389082455640S ribosomal protein S21 (RPS21B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFOPO.I.C.G.H.G.
19.399.6139.7At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
19.199.6154.2At5g43970834420TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.O.I.C.G.H.G.
18.899.5100.0At3g17780821046unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
18.799.5154.2At1g16740838245ribosomal protein L20 family proteinF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.C.G.H.G.
18.499.5355.5At3g4737082389140S ribosomal protein S20 (RPS20B)F:structural constituent of ribosome, RNA binding;P:translation;C:in 6 components;BOMAPFO.I.C.G.H.G.
18.199.5114.1At1g476253767388-pseudogene of seven transmembrane domain proteinO.I.C.G.H.G.
18.099.551.4At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
17.999.5204.9At5g0261083185360S ribosomal protein L35 (RPL35D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFPO.I.C.G.H.G.
17.999.543.5At1g12400837795DNA bindingF:DNA binding;P:nucleotide-excision repair;C:endomembrane system;MPOO.I.C.G.H.G.
17.099.5537.8At5g5667083576840S ribosomal protein S30 (RPS30C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAVO.I.C.G.H.G.
17.099.5358.8At4g24920828594protein transport protein SEC61 gamma subunit, putativeF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport, protein targeting;C:membrane;MFOPAO.I.C.G.H.G.
17.099.556.5At5g41560834158-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO.I.C.G.H.G.
16.899.565.8At1g18700838451DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:endoplasmic reticulum;MOPFBO.I.C.G.H.G.
16.899.561.1At3g09470820104-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
16.599.520.0At1g06930837204unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.C.G.H.G.
16.299.5202.5At1g30630839943coatomer protein epsilon subunit family protein / COPE family proteinF:protein transporter activity, protein binding, structural molecule activity, binding;P:retrograde vesicle-mediated transport, Golgi to ER;C:plasma membrane;MPFOBAO.I.C.G.H.G.
16.199.544.3At1g54890841928late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.099.519.1At5g27860832849unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFPBVAO.I.C.G.H.G.
15.799.5332.6At5g50460835114protein transport protein SEC61 gamma subunit, putativeF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport, protein transport, protein targeting;C:membrane;MFOPAO.I.C.G.H.G.
15.599.536.6At2g14460815934unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.399.4215.9At3g1009082017040S ribosomal protein S28 (RPS28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFO.I.C.G.H.G.
15.299.428.5At1g67420843062peptidaseF:peptidase activity;P:proteolysis;C:endomembrane system;MBFOPAO.I.C.G.H.G.
14.699.4511.0At3g0950082010760S ribosomal protein L35 (RPL35A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFPO.I.C.G.H.G.
14.499.483.1At5g53650835446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.499.450.8At1g17510838325unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.099.41043.8At3g6024582519560S ribosomal protein L37a (RPL37aC)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
14.099.4197.0At2g02510814780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PFO.I.C.G.H.G.
14.099.4189.5At3g54400824606aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast, cell wall, chloroplast, plant-type cell wall;PMFOO.I.C.G.H.G.
14.099.4114.0At2g46390819247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.599.4144.8At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.H.G.
13.499.4356.2At4g19410827682pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:cell wall, membrane, plant-type cell wall;PMOBAO.I.C.G.H.G.
13.399.469.5At2g18400816355ribosomal protein L6 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMAO.I.C.G.H.G.
13.299.4210.4At1g32210840113ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.O.I.C.G.H.G.
13.299.465.6At4g39300830086unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
13.099.442.8At1g13590837920ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.O.I.C.G.H.G.
12.899.369.5At1g28395839737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
12.899.351.7At1g68680843198unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
12.799.3235.6At5g66680836801DGL1Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.O.I.C.G.H.G.
12.799.3100.9At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
12.799.331.4At3g62450825418unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.699.3506.8At5g0385083169240S ribosomal protein S28 (RPS28B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPFO.I.C.G.H.G.
12.599.3443.4At4g24190828520SHD (SHEPHERD)encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.O.I.C.G.H.G.
12.499.368.0At2g25670817108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
12.499.327.4At2g17080816213unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBVO.I.C.G.H.G.
12.399.314.8At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.299.3375.4At2g4346081894760S ribosomal protein L38 (RPL38A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
12.299.3253.0At1g641908427246-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAVO.I.C.G.H.G.
12.199.3649.8At2g0439081497840S ribosomal protein S17 (RPS17A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane;MOAFPO.I.C.G.H.G.
12.099.3186.2At5g44110834434POP1Encodes a member of the NAP subfamily of ABC transporters.O.I.C.G.H.G.
12.099.349.5At3g10525820217-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
12.099.335.8At3g26360822240unknown proteinF:unknown;P:unknown;C:unknown;PBOO.I.C.G.H.G.
11.999.323.1At5g19570832077unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
11.899.359.0At5g66590836791allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
11.599.322.6At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
11.499.3286.3At2g36170818189ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)F:protein binding, structural constituent of ribosome;P:protein modification process, translation;C:cytosolic large ribosomal subunit, nucleolus;MPOFVBO.I.C.G.H.G.
11.399.380.8At3g46030823746HTB11F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFBO.I.C.G.H.G.
11.299.251.9At1g61580842454RPL3B (R-PROTEIN L3 B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFVO.I.C.G.H.G.
11.099.274.8At5g04470830326SIM (SIAMESE)Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.O.I.C.G.H.G.
10.999.2311.6At3g45980823741HTB9Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.O.I.C.G.H.G.
10.999.259.9At5g10830830950embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAO.I.C.G.H.G.
10.899.297.1At5g15320831384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.899.262.0At1g04340839547lesion inducing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
10.899.258.9At1g48160841235signal recognition particle 19 kDa protein, putative / SRP19, putativeF:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOPO.I.C.G.H.G.



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