CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226533

Assay name L3SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
72.9 99.9 46.1 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
70.4 99.9 140.6 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
52.7 99.8 142.7 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
51.4 99.8 18.6 At5g57080 835812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
50.8 99.8 46.4 At3g18510 821381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.8 99.8 192.1 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
39.9 99.8 494.7 At2g45070 819114 SEC61 BETA Sec61 Beta Subunit O.I. C.G. H.G.
36.4 99.7 93.5 At1g61580 842454 RPL3B (R-PROTEIN L3 B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV O.I. C.G. H.G.
35.1 99.7 56.1 At1g17560 838332 HLL (HUELLENLOS) Mutant shows abnormal ovule development O.I. C.G. H.G.
30.9 99.7 16.0 At5g52220 835298 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
30.0 99.7 119.4 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
29.2 99.7 102.8 At2g18400 816355 ribosomal protein L6 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA O.I. C.G. H.G.
28.2 99.7 15.7 At2g20480 816568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.5 99.7 184.9 At5g43970 834420 TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V) Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion. O.I. C.G. H.G.
27.3 99.7 101.5 At1g28395 839737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
26.2 99.7 47.6 At2g14460 815934 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.6 99.7 186.2 At4g25890 828695 60S acidic ribosomal protein P3 (RPP3A) F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOB O.I. C.G. H.G.
25.3 99.6 61.0 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.1 99.6 129.9 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
24.4 99.6 175.8 At1g16740 838245 ribosomal protein L20 family protein F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM O.I. C.G. H.G.
24.4 99.6 95.6 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
23.9 99.6 103.1 At4g30800 829203 40S ribosomal protein S11 (RPS11B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP O.I. C.G. H.G.
23.7 99.6 256.9 At4g13170 826931 60S ribosomal protein L13A (RPL13aC) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;OMBAPF O.I. C.G. H.G.
22.2 99.6 54.5 At1g44835 841048 YbaK/prolyl-tRNA synthetase family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPF O.I. C.G. H.G.
22.0 99.6 40.2 At5g59240 836042 40S ribosomal protein S8 (RPS8B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP O.I. C.G. H.G.
21.9 99.6 258.2 At3g10090 820170 40S ribosomal protein S28 (RPS28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF O.I. C.G. H.G.
20.1 99.6 363.7 At2g25210 817059 60S ribosomal protein L39 (RPL39A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP O.I. C.G. H.G.
19.9 99.6 59.1 At1g23410 838949 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB O.I. C.G. H.G.
19.7 99.6 54.2 At5g57120 835816 - F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVA O.I. C.G. H.G.
19.4 99.6 202.0 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
19.2 99.6 62.2 At2g45860 819194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.2 99.6 58.6 At1g17510 838325 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
19.0 99.5 211.9 At5g08040 830698 TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG) F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;P O.I. C.G. H.G.
18.9 99.5 100.9 At2g35605 818127 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV O.I. C.G. H.G.
18.8 99.5 411.0 At4g31985 829329 60S ribosomal protein L39 (RPL39C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP O.I. C.G. H.G.
18.8 99.5 137.8 At3g02190 820350 60S ribosomal protein L39 (RPL39B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
18.6 99.5 195.1 At1g61570 842453 TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13) Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space. O.I. C.G. H.G.
18.4 99.5 20.9 At5g60730 836194 anion-transporting ATPase family protein F:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFP O.I. C.G. H.G.
18.4 99.5 14.2 At1g64220 842727 TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2) F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport;C:mitochondrial outer membrane;P O.I. C.G. H.G.
18.1 99.5 97.3 At1g07070 837218 60S ribosomal protein L35a (RPL35aA) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
17.9 99.5 51.3 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
17.5 99.5 545.9 At5g56670 835768 40S ribosomal protein S30 (RPS30C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV O.I. C.G. H.G.
17.2 99.5 48.8 At3g55170 824683 60S ribosomal protein L35 (RPL35C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
17.2 99.5 28.8 At3g13175 820507 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.8 99.5 186.5 At2g39390 818524 60S ribosomal protein L35 (RPL35B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
16.7 99.5 355.4 At3g12390 820418 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative F:unknown;P:response to salt stress;C:cytosolic ribosome;MOFBPVA O.I. C.G. H.G.
16.7 99.5 35.2 At4g16265 827321 NRPB9B One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980 O.I. C.G. H.G.
16.0 99.5 7.5 At4g35200 829673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
15.9 99.5 17.7 At5g12970 831137 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF O.I. C.G. H.G.
15.7 99.5 191.8 At5g02610 831853 60S ribosomal protein L35 (RPL35D) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFP O.I. C.G. H.G.
15.7 99.5 71.4 At4g39300 830086 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
15.6 99.5 111.6 At3g06320 819806 ribosomal protein L33 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF O.I. C.G. H.G.
15.5 99.5 495.4 At2g36620 818234 RPL24A (ribosomal protein L24) RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020). O.I. C.G. H.G.
15.3 99.4 277.0 At5g57290 835834 60S acidic ribosomal protein P3 (RPP3B) F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus;MPFOBVA O.I. C.G. H.G.
15.3 99.4 34.9 At5g38720 833863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
15.2 99.4 561.6 At4g29390 829060 40S ribosomal protein S30 (RPS30B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV O.I. C.G. H.G.
15.0 99.4 62.3 At2g37975 818375 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
14.9 99.4 182.8 At2g20490 816569 NOP10 F:RNA binding;P:polar nucleus fusion;C:nucleolus, Cajal body;MFOP O.I. C.G. H.G.
14.9 99.4 62.1 At5g64670 836588 ribosomal protein L15 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, large ribosomal subunit;BOMFP O.I. C.G. H.G.
14.8 99.4 336.5 At5g64140 836535 RPS28 (RIBOSOMAL PROTEIN S28) Encodes a putative ribosomal protein S28. O.I. C.G. H.G.
14.6 99.4 55.7 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
14.3 99.4 89.9 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. O.I. C.G. H.G.
14.3 99.4 11.7 At2g31725 817729 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
13.8 99.4 12.1 At3g51410 824304 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
13.6 99.4 114.6 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
13.5 99.4 141.4 At3g47836 823939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.5 99.4 66.3 At4g25340 828637 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA O.I. C.G. H.G.
13.4 99.4 107.7 At3g06035 819776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB O.I. C.G. H.G.
13.0 99.4 44.5 At3g13845 820597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.8 99.3 219.9 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
12.7 99.3 295.0 At3g47370 823891 40S ribosomal protein S20 (RPS20B) F:structural constituent of ribosome, RNA binding;P:translation;C:in 6 components;BOMAPF O.I. C.G. H.G.
12.7 99.3 37.7 At2g32220 817781 60S ribosomal protein L27 (RPL27A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, membrane;MOFP O.I. C.G. H.G.
12.6 99.3 22.1 At1g23100 838918 10 kDa chaperonin, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV O.I. C.G. H.G.
12.6 99.3 15.4 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
12.4 99.3 50.8 At1g68680 843198 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
11.7 99.3 95.7 At3g06610 819840 DNA-binding enhancer protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
11.7 99.3 75.3 At5g54970 835588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.7 99.3 37.8 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.6 99.3 58.1 At4g39860 830145 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus, cytoplasm;PFO O.I. C.G. H.G.
11.6 99.3 12.1 At5g10850 830952 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.3 99.3 99.4 At5g48870 834945 SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes. O.I. C.G. H.G.
11.2 99.2 185.2 At3g46560 823809 TIM9 Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. O.I. C.G. H.G.
11.2 99.2 116.1 At3g19130 821447 ATRBP47B (RNA-binding protein 47B) F:RNA binding;P:unknown;C:unknown;MOPFBAV O.I. C.G. H.G.
11.2 99.2 60.9 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
11.1 99.2 29.4 At3g62450 825418 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.0 99.2 7.9 At5g52170 835293 HDG7 (HOMEODOMAIN GLABROUS 7) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
10.9 99.2 250.8 At3g44590 823584 60S acidic ribosomal protein P2 (RPP2D) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA O.I. C.G. H.G.
10.9 99.2 184.0 At4g29735 829095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
10.8 99.2 6.6 At5g59060 836023 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
10.7 99.2 635.6 At2g19730 816492 60S ribosomal protein L28 (RPL28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO O.I. C.G. H.G.
10.7 99.2 243.5 At3g52580 824424 40S ribosomal protein S14 (RPS14C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF O.I. C.G. H.G.
10.6 99.2 417.7 At3g53890 824556 40S ribosomal protein S21 (RPS21B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFOP O.I. C.G. H.G.
10.5 99.2 336.4 At1g14980 838063 CPN10 (CHAPERONIN 10) Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. O.I. C.G. H.G.
10.5 99.2 79.1 At3g52040 824367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.4 99.2 44.1 At2g07340 815304 prefoldin-related KE2 family protein F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFAPO O.I. C.G. H.G.
10.4 99.2 33.1 At1g12400 837795 DNA binding F:DNA binding;P:nucleotide-excision repair;C:endomembrane system;MPO O.I. C.G. H.G.
10.2 99.2 342.9 At2g43460 818947 60S ribosomal protein L38 (RPL38A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
10.2 99.2 28.5 At3g16200 820866 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB O.I. C.G. H.G.
10.1 99.2 32.9 At3g26360 822240 unknown protein F:unknown;P:unknown;C:unknown;PBO O.I. C.G. H.G.
10.0 99.2 3.0 At2g22710 816801 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
72.9	99.9	46.1	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
70.4	99.9	140.6	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
52.7	99.8	142.7	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
51.4	99.8	18.6	At5g57080	835812	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
50.8	99.8	46.4	At3g18510	821381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.8	99.8	192.1	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
39.9	99.8	494.7	At2g45070	819114	SEC61 BETA	Sec61 Beta Subunit	O.I.	C.G.	H.G.
36.4	99.7	93.5	At1g61580	842454	RPL3B (R-PROTEIN L3 B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV	O.I.	C.G.	H.G.
35.1	99.7	56.1	At1g17560	838332	HLL (HUELLENLOS)	Mutant shows abnormal ovule development	O.I.	C.G.	H.G.
30.9	99.7	16.0	At5g52220	835298	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
30.0	99.7	119.4	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
29.2	99.7	102.8	At2g18400	816355	ribosomal protein L6 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA	O.I.	C.G.	H.G.
28.2	99.7	15.7	At2g20480	816568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.5	99.7	184.9	At5g43970	834420	TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)	Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.	O.I.	C.G.	H.G.
27.3	99.7	101.5	At1g28395	839737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
26.2	99.7	47.6	At2g14460	815934	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.6	99.7	186.2	At4g25890	828695	60S acidic ribosomal protein P3 (RPP3A)	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOB	O.I.	C.G.	H.G.
25.3	99.6	61.0	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.1	99.6	129.9	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
24.4	99.6	175.8	At1g16740	838245	ribosomal protein L20 family protein	F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM	O.I.	C.G.	H.G.
24.4	99.6	95.6	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
23.9	99.6	103.1	At4g30800	829203	40S ribosomal protein S11 (RPS11B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP	O.I.	C.G.	H.G.
23.7	99.6	256.9	At4g13170	826931	60S ribosomal protein L13A (RPL13aC)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;OMBAPF	O.I.	C.G.	H.G.
22.2	99.6	54.5	At1g44835	841048	YbaK/prolyl-tRNA synthetase family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPF	O.I.	C.G.	H.G.
22.0	99.6	40.2	At5g59240	836042	40S ribosomal protein S8 (RPS8B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP	O.I.	C.G.	H.G.
21.9	99.6	258.2	At3g10090	820170	40S ribosomal protein S28 (RPS28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF	O.I.	C.G.	H.G.
20.1	99.6	363.7	At2g25210	817059	60S ribosomal protein L39 (RPL39A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	O.I.	C.G.	H.G.
19.9	99.6	59.1	At1g23410	838949	ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)	F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB	O.I.	C.G.	H.G.
19.7	99.6	54.2	At5g57120	835816	-	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.
19.4	99.6	202.0	At5g03345	831867	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
19.2	99.6	62.2	At2g45860	819194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.2	99.6	58.6	At1g17510	838325	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
19.0	99.5	211.9	At5g08040	830698	TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG)	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;P	O.I.	C.G.	H.G.
18.9	99.5	100.9	At2g35605	818127	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV	O.I.	C.G.	H.G.
18.8	99.5	411.0	At4g31985	829329	60S ribosomal protein L39 (RPL39C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	O.I.	C.G.	H.G.
18.8	99.5	137.8	At3g02190	820350	60S ribosomal protein L39 (RPL39B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
18.6	99.5	195.1	At1g61570	842453	TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)	Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.	O.I.	C.G.	H.G.
18.4	99.5	20.9	At5g60730	836194	anion-transporting ATPase family protein	F:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFP	O.I.	C.G.	H.G.
18.4	99.5	14.2	At1g64220	842727	TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)	F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport;C:mitochondrial outer membrane;P	O.I.	C.G.	H.G.
18.1	99.5	97.3	At1g07070	837218	60S ribosomal protein L35a (RPL35aA)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
17.9	99.5	51.3	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
17.5	99.5	545.9	At5g56670	835768	40S ribosomal protein S30 (RPS30C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV	O.I.	C.G.	H.G.
17.2	99.5	48.8	At3g55170	824683	60S ribosomal protein L35 (RPL35C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
17.2	99.5	28.8	At3g13175	820507	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.8	99.5	186.5	At2g39390	818524	60S ribosomal protein L35 (RPL35B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
16.7	99.5	355.4	At3g12390	820418	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	F:unknown;P:response to salt stress;C:cytosolic ribosome;MOFBPVA	O.I.	C.G.	H.G.
16.7	99.5	35.2	At4g16265	827321	NRPB9B	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980	O.I.	C.G.	H.G.
16.0	99.5	7.5	At4g35200	829673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
15.9	99.5	17.7	At5g12970	831137	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
15.7	99.5	191.8	At5g02610	831853	60S ribosomal protein L35 (RPL35D)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFP	O.I.	C.G.	H.G.
15.7	99.5	71.4	At4g39300	830086	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
15.6	99.5	111.6	At3g06320	819806	ribosomal protein L33 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	C.G.	H.G.
15.5	99.5	495.4	At2g36620	818234	RPL24A (ribosomal protein L24)	RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).	O.I.	C.G.	H.G.
15.3	99.4	277.0	At5g57290	835834	60S acidic ribosomal protein P3 (RPP3B)	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus;MPFOBVA	O.I.	C.G.	H.G.
15.3	99.4	34.9	At5g38720	833863	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
15.2	99.4	561.6	At4g29390	829060	40S ribosomal protein S30 (RPS30B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV	O.I.	C.G.	H.G.
15.0	99.4	62.3	At2g37975	818375	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
14.9	99.4	182.8	At2g20490	816569	NOP10	F:RNA binding;P:polar nucleus fusion;C:nucleolus, Cajal body;MFOP	O.I.	C.G.	H.G.
14.9	99.4	62.1	At5g64670	836588	ribosomal protein L15 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, large ribosomal subunit;BOMFP	O.I.	C.G.	H.G.
14.8	99.4	336.5	At5g64140	836535	RPS28 (RIBOSOMAL PROTEIN S28)	Encodes a putative ribosomal protein S28.	O.I.	C.G.	H.G.
14.6	99.4	55.7	At2g45730	819181	eukaryotic initiation factor 3 gamma subunit family protein	F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
14.3	99.4	89.9	At4g32720	829408	AtLa1 (Arabidopsis thaliana La protein 1)	Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.	O.I.	C.G.	H.G.
14.3	99.4	11.7	At2g31725	817729	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
13.8	99.4	12.1	At3g51410	824304	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
13.6	99.4	114.6	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
13.5	99.4	141.4	At3g47836	823939	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.5	99.4	66.3	At4g25340	828637	immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.
13.4	99.4	107.7	At3g06035	819776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB	O.I.	C.G.	H.G.
13.0	99.4	44.5	At3g13845	820597	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.8	99.3	219.9	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
12.7	99.3	295.0	At3g47370	823891	40S ribosomal protein S20 (RPS20B)	F:structural constituent of ribosome, RNA binding;P:translation;C:in 6 components;BOMAPF	O.I.	C.G.	H.G.
12.7	99.3	37.7	At2g32220	817781	60S ribosomal protein L27 (RPL27A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, membrane;MOFP	O.I.	C.G.	H.G.
12.6	99.3	22.1	At1g23100	838918	10 kDa chaperonin, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV	O.I.	C.G.	H.G.
12.6	99.3	15.4	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
12.4	99.3	50.8	At1g68680	843198	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.7	99.3	95.7	At3g06610	819840	DNA-binding enhancer protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
11.7	99.3	75.3	At5g54970	835588	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.7	99.3	37.8	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.6	99.3	58.1	At4g39860	830145	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus, cytoplasm;PFO	O.I.	C.G.	H.G.
11.6	99.3	12.1	At5g10850	830952	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.3	99.3	99.4	At5g48870	834945	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.	O.I.	C.G.	H.G.
11.2	99.2	185.2	At3g46560	823809	TIM9	Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.	O.I.	C.G.	H.G.
11.2	99.2	116.1	At3g19130	821447	ATRBP47B (RNA-binding protein 47B)	F:RNA binding;P:unknown;C:unknown;MOPFBAV	O.I.	C.G.	H.G.
11.2	99.2	60.9	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
11.1	99.2	29.4	At3g62450	825418	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.0	99.2	7.9	At5g52170	835293	HDG7 (HOMEODOMAIN GLABROUS 7)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
10.9	99.2	250.8	At3g44590	823584	60S acidic ribosomal protein P2 (RPP2D)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA	O.I.	C.G.	H.G.
10.9	99.2	184.0	At4g29735	829095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
10.8	99.2	6.6	At5g59060	836023	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
10.7	99.2	635.6	At2g19730	816492	60S ribosomal protein L28 (RPL28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO	O.I.	C.G.	H.G.
10.7	99.2	243.5	At3g52580	824424	40S ribosomal protein S14 (RPS14C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
10.6	99.2	417.7	At3g53890	824556	40S ribosomal protein S21 (RPS21B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFOP	O.I.	C.G.	H.G.
10.5	99.2	336.4	At1g14980	838063	CPN10 (CHAPERONIN 10)	Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.	O.I.	C.G.	H.G.
10.5	99.2	79.1	At3g52040	824367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.4	99.2	44.1	At2g07340	815304	prefoldin-related KE2 family protein	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFAPO	O.I.	C.G.	H.G.
10.4	99.2	33.1	At1g12400	837795	DNA binding	F:DNA binding;P:nucleotide-excision repair;C:endomembrane system;MPO	O.I.	C.G.	H.G.
10.2	99.2	342.9	At2g43460	818947	60S ribosomal protein L38 (RPL38A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
10.2	99.2	28.5	At3g16200	820866	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB	O.I.	C.G.	H.G.
10.1	99.2	32.9	At3g26360	822240	unknown protein	F:unknown;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.
10.0	99.2	3.0	At2g22710	816801	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.

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GSM ID	GSM226533
Assay name	L3SB
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226533 Assay name L3SB GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226533

Assay name L3SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function