CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226531

Assay name L1SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1026.9 100.0 805.7 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
688.0 100.0 1444.4 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
415.3 100.0 91.4 At2g28870 817436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
407.5 100.0 88.9 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
341.9 100.0 239.0 At2g04025 814929 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
312.2 100.0 478.4 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
294.3 100.0 92.2 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF O.I. C.G. H.G.
292.8 100.0 39.9 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. C.G. H.G.
282.1 100.0 261.9 At3g23410 821922 alcohol oxidase-related Encodes a fatty alcohol oxidase. O.I. C.G. H.G.
171.7 100.0 2486.2 At1g20450 838633 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. O.I. C.G. H.G.
151.1 99.9 39.6 At5g39820 833978 anac094 (Arabidopsis NAC domain containing protein 94) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
147.5 99.9 44.0 At5g48130 834865 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;P O.I. C.G. H.G.
145.6 99.9 167.1 At1g36770 3767031 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
121.6 99.9 307.8 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA O.I. C.G. H.G.
121.3 99.9 153.4 At4g38410 829998 dehydrin, putative F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
119.7 99.9 374.7 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
114.8 99.9 307.5 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
111.4 99.9 119.8 At1g23210 838930 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
100.2 99.9 50.1 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF O.I. C.G. H.G.
96.7 99.9 70.8 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family O.I. C.G. H.G.
90.9 99.9 159.0 At5g09960 830857 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
89.7 99.9 87.5 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. C.G. H.G.
86.6 99.9 191.4 At5g20660 832189 24 kDa vacuolar protein, putative F:peptidase activity;P:proteolysis;C:unknown;MBFOPA O.I. C.G. H.G.
84.0 99.9 52.8 At2g23360 816868 transport protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV O.I. C.G. H.G.
79.3 99.9 123.4 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
79.0 99.9 26.2 At2g03830 814909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
77.8 99.9 35.4 At2g43480 818949 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
76.0 99.9 17.3 At5g58580 835972 ATL63 (ARABIDOPSIS TÓ F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
72.8 99.9 196.3 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P O.I. C.G. H.G.
67.3 99.8 44.7 At1g07290 837240 nucleotide-sugar transmembrane transporter F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
63.3 99.8 348.5 At3g57650 824934 LPAT2 Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity. O.I. C.G. H.G.
55.7 99.8 29.1 At1g49390 841362 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
52.9 99.8 100.1 At4g37160 829870 sks15 (SKU5 Similar 15) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
51.6 99.8 60.3 At5g57500 835854 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF O.I. C.G. H.G.
48.0 99.8 14.7 At1g77200 844056 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
47.1 99.8 30.6 At5g26230 832692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPV O.I. C.G. H.G.
45.6 99.8 336.9 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
43.3 99.8 20.0 At5g47440 834792 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF O.I. C.G. H.G.
43.2 99.8 67.1 At3g57160 824883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
41.5 99.8 21.9 At1g53060 841740 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
39.5 99.8 208.2 At5g01040 831877 LAC8 (laccase 8) putative laccase, knockout mutant showed early flowering O.I. C.G. H.G.
37.1 99.7 40.7 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.0 99.7 141.5 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.8 99.7 9.8 At3g26120 822211 TEL1 (TERMINAL EAR1-LIKE 1) Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. O.I. C.G. H.G.
36.3 99.7 84.6 At4g27400 828848 late embryogenesis abundant protein-related / LEA protein-related F:unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.
35.4 99.7 91.3 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
35.1 99.7 85.6 At1g73960 843733 TAF2 (TBP-ASSOCIATED FACTOR 2) F:metallopeptidase activity, zinc ion binding;P:unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
33.2 99.7 40.7 At5g15160 831368 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;P O.I. C.G. H.G.
33.2 99.7 9.4 At3g32190 822986 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV O.I. C.G. H.G.
32.7 99.7 97.2 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
32.5 99.7 83.3 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.4 99.7 67.8 At2g23630 816895 sks16 (SKU5 Similar 16) F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
32.0 99.7 90.8 At1g18700 838451 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:endoplasmic reticulum;MOPFB O.I. C.G. H.G.
32.0 99.7 46.1 At3g62140 825387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
31.5 99.7 26.2 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
30.8 99.7 61.8 At1g21700 838774 ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003). O.I. C.G. H.G.
30.7 99.7 62.1 At3g01860 820070 unknown protein F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PM O.I. C.G. H.G.
30.5 99.7 20.1 At3g55550 824720 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
30.2 99.7 107.2 At5g60950 836216 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
30.2 99.7 17.0 At5g55950 835693 transporter-related F:unknown;P:N-terminal protein myristoylation;C:membrane;PMFOBA O.I. C.G. H.G.
28.7 99.7 82.1 At3g07410 819929 AtRABA5b (Arabidopsis Rab GTPase homolog A5b) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. C.G. H.G.
28.7 99.7 49.3 At5g35740 833551 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
28.6 99.7 39.9 At5g02420 831836 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.9 99.7 27.2 At3g10780 820247 emp24/gp25L/p24 family protein F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO O.I. C.G. H.G.
27.5 99.7 15.5 At5g22550 832317 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.3 99.7 18.0 At4g13690 827003 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM O.I. C.G. H.G.
26.8 99.7 153.1 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.1 99.7 24.3 At1g26870 837796 FEZ (FEZ) F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;P O.I. C.G. H.G.
25.9 99.7 66.6 At3g62020 825375 GLP10 (GERMIN-LIKE PROTEIN 10) germin-like protein (GLP10) O.I. C.G. H.G.
25.2 99.6 57.7 At1g16610 838230 SR45 SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. O.I. C.G. H.G.
24.7 99.6 133.0 At2g07699 3768015 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
24.6 99.6 25.6 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
23.4 99.6 270.8 At1g09200 837440 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
23.4 99.6 27.1 At1g67500 843071 ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS). O.I. C.G. H.G.
23.0 99.6 21.1 At4g37940 829950 AGL21 encodes a MADS box protein, highly expressed in the root. O.I. C.G. H.G.
22.9 99.6 25.2 At4g01730 826911 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP O.I. C.G. H.G.
22.5 99.6 22.6 At1g79200 844261 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
22.4 99.6 21.7 At1g79580 844296 SMB (SOMBRERO) NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions. O.I. C.G. H.G.
22.3 99.6 4.7 At3g32160 822980 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.2 99.6 148.8 At1g14610 838023 TWN2 (TWIN 2) Required for proper proliferation of basal cells. O.I. C.G. H.G.
21.8 99.6 20.2 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
21.5 99.6 180.8 At4g31840 829313 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
20.9 99.6 30.8 At2g36200 818192 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV O.I. C.G. H.G.
20.8 99.6 43.3 At5g58450 835958 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
20.6 99.6 18.8 At2g23700 816901 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
20.4 99.6 54.7 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
20.0 99.6 40.8 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
19.4 99.6 56.9 At3g18230 821351 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:unknown;P:unknown;C:cytosol, nucleus;MOFPBVA O.I. C.G. H.G.
18.9 99.5 98.6 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA O.I. C.G. H.G.
18.9 99.5 37.9 At5g64160 836537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
18.8 99.5 59.3 At5g41560 834158 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MP O.I. C.G. H.G.
18.7 99.5 22.7 At3g44610 823587 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA O.I. C.G. H.G.
18.6 99.5 240.1 At4g29735 829095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
18.6 99.5 31.3 At5g13480 831191 FY Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal. O.I. C.G. H.G.
18.3 99.5 110.5 At5g43580 834378 serine-type endopeptidase inhibitor Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
18.3 99.5 15.7 At1g10810 837624 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
18.1 99.5 837.0 At3g49010 824062 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). O.I. C.G. H.G.
17.8 99.5 96.4 At1g53400 841776 unknown protein F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MPFO O.I. C.G. H.G.
17.8 99.5 76.7 At1g52910 841724 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.7 99.5 14.2 At5g57420 835848 IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33) Belongs to auxin inducible gene family. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1026.9	100.0	805.7	At1g22880	838893	CEL5 (CELLULASE 5)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
688.0	100.0	1444.4	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
415.3	100.0	91.4	At2g28870	817436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
407.5	100.0	88.9	At2g40470	818641	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
341.9	100.0	239.0	At2g04025	814929	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
312.2	100.0	478.4	At1g50060	841430	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
294.3	100.0	92.2	At1g23160	838924	auxin-responsive GH3 family protein	F:unknown;P:response to auxin stimulus;C:unknown;OPBMF	O.I.	C.G.	H.G.
292.8	100.0	39.9	At1g50720	841494	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM	O.I.	C.G.	H.G.
282.1	100.0	261.9	At3g23410	821922	alcohol oxidase-related	Encodes a fatty alcohol oxidase.	O.I.	C.G.	H.G.
171.7	100.0	2486.2	At1g20450	838633	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	O.I.	C.G.	H.G.
151.1	99.9	39.6	At5g39820	833978	anac094 (Arabidopsis NAC domain containing protein 94)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
147.5	99.9	44.0	At5g48130	834865	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;P	O.I.	C.G.	H.G.
145.6	99.9	167.1	At1g36770	3767031	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
121.6	99.9	307.8	At3g19430	821477	late embryogenesis abundant protein-related / LEA protein-related	F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA	O.I.	C.G.	H.G.
121.3	99.9	153.4	At4g38410	829998	dehydrin, putative	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
119.7	99.9	374.7	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
114.8	99.9	307.5	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
111.4	99.9	119.8	At1g23210	838930	AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
100.2	99.9	50.1	At5g51470	835221	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
96.7	99.9	70.8	At1g14080	837968	FUT6 (FUCOSYLTRANSFERASE 6)	member of Xyloglucan fucosyltransferase family	O.I.	C.G.	H.G.
90.9	99.9	159.0	At5g09960	830857	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
89.7	99.9	87.5	At4g26880	828795	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM	O.I.	C.G.	H.G.
86.6	99.9	191.4	At5g20660	832189	24 kDa vacuolar protein, putative	F:peptidase activity;P:proteolysis;C:unknown;MBFOPA	O.I.	C.G.	H.G.
84.0	99.9	52.8	At2g23360	816868	transport protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV	O.I.	C.G.	H.G.
79.3	99.9	123.4	At3g04320	819587	endopeptidase inhibitor	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
79.0	99.9	26.2	At2g03830	814909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
77.8	99.9	35.4	At2g43480	818949	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
76.0	99.9	17.3	At5g58580	835972	ATL63 (ARABIDOPSIS TÓ	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
72.8	99.9	196.3	At5g10130	830877	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P	O.I.	C.G.	H.G.
67.3	99.8	44.7	At1g07290	837240	nucleotide-sugar transmembrane transporter	F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
63.3	99.8	348.5	At3g57650	824934	LPAT2	Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity.	O.I.	C.G.	H.G.
55.7	99.8	29.1	At1g49390	841362	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
52.9	99.8	100.1	At4g37160	829870	sks15 (SKU5 Similar 15)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
51.6	99.8	60.3	At5g57500	835854	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF	O.I.	C.G.	H.G.
48.0	99.8	14.7	At1g77200	844056	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
47.1	99.8	30.6	At5g26230	832692	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPV	O.I.	C.G.	H.G.
45.6	99.8	336.9	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
43.3	99.8	20.0	At5g47440	834792	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
43.2	99.8	67.1	At3g57160	824883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
41.5	99.8	21.9	At1g53060	841740	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
39.5	99.8	208.2	At5g01040	831877	LAC8 (laccase 8)	putative laccase, knockout mutant showed early flowering	O.I.	C.G.	H.G.
37.1	99.7	40.7	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.0	99.7	141.5	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.8	99.7	9.8	At3g26120	822211	TEL1 (TERMINAL EAR1-LIKE 1)	Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins.	O.I.	C.G.	H.G.
36.3	99.7	84.6	At4g27400	828848	late embryogenesis abundant protein-related / LEA protein-related	F:unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.
35.4	99.7	91.3	At5g60520	836173	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
35.1	99.7	85.6	At1g73960	843733	TAF2 (TBP-ASSOCIATED FACTOR 2)	F:metallopeptidase activity, zinc ion binding;P:unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
33.2	99.7	40.7	At5g15160	831368	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;P	O.I.	C.G.	H.G.
33.2	99.7	9.4	At3g32190	822986	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV	O.I.	C.G.	H.G.
32.7	99.7	97.2	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
32.5	99.7	83.3	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.4	99.7	67.8	At2g23630	816895	sks16 (SKU5 Similar 16)	F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
32.0	99.7	90.8	At1g18700	838451	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:endoplasmic reticulum;MOPFB	O.I.	C.G.	H.G.
32.0	99.7	46.1	At3g62140	825387	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
31.5	99.7	26.2	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
30.8	99.7	61.8	At1g21700	838774	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C)	a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).	O.I.	C.G.	H.G.
30.7	99.7	62.1	At3g01860	820070	unknown protein	F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PM	O.I.	C.G.	H.G.
30.5	99.7	20.1	At3g55550	824720	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
30.2	99.7	107.2	At5g60950	836216	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
30.2	99.7	17.0	At5g55950	835693	transporter-related	F:unknown;P:N-terminal protein myristoylation;C:membrane;PMFOBA	O.I.	C.G.	H.G.
28.7	99.7	82.1	At3g07410	819929	AtRABA5b (Arabidopsis Rab GTPase homolog A5b)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
28.7	99.7	49.3	At5g35740	833551	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
28.6	99.7	39.9	At5g02420	831836	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.9	99.7	27.2	At3g10780	820247	emp24/gp25L/p24 family protein	F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO	O.I.	C.G.	H.G.
27.5	99.7	15.5	At5g22550	832317	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.3	99.7	18.0	At4g13690	827003	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
26.8	99.7	153.1	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.1	99.7	24.3	At1g26870	837796	FEZ (FEZ)	F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;P	O.I.	C.G.	H.G.
25.9	99.7	66.6	At3g62020	825375	GLP10 (GERMIN-LIKE PROTEIN 10)	germin-like protein (GLP10)	O.I.	C.G.	H.G.
25.2	99.6	57.7	At1g16610	838230	SR45	SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.	O.I.	C.G.	H.G.
24.7	99.6	133.0	At2g07699	3768015	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
24.6	99.6	25.6	At3g25790	822170	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
23.4	99.6	270.8	At1g09200	837440	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
23.4	99.6	27.1	At1g67500	843071	ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3)	Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).	O.I.	C.G.	H.G.
23.0	99.6	21.1	At4g37940	829950	AGL21	encodes a MADS box protein, highly expressed in the root.	O.I.	C.G.	H.G.
22.9	99.6	25.2	At4g01730	826911	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP	O.I.	C.G.	H.G.
22.5	99.6	22.6	At1g79200	844261	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
22.4	99.6	21.7	At1g79580	844296	SMB (SOMBRERO)	NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	O.I.	C.G.	H.G.
22.3	99.6	4.7	At3g32160	822980	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.2	99.6	148.8	At1g14610	838023	TWN2 (TWIN 2)	Required for proper proliferation of basal cells.	O.I.	C.G.	H.G.
21.8	99.6	20.2	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
21.5	99.6	180.8	At4g31840	829313	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
20.9	99.6	30.8	At2g36200	818192	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV	O.I.	C.G.	H.G.
20.8	99.6	43.3	At5g58450	835958	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
20.6	99.6	18.8	At2g23700	816901	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
20.4	99.6	54.7	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
20.0	99.6	40.8	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
19.4	99.6	56.9	At3g18230	821351	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	F:unknown;P:unknown;C:cytosol, nucleus;MOFPBVA	O.I.	C.G.	H.G.
18.9	99.5	98.6	At2g07751	815347	NADH-ubiquinone oxidoreductase chain 3, putative	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA	O.I.	C.G.	H.G.
18.9	99.5	37.9	At5g64160	836537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
18.8	99.5	59.3	At5g41560	834158	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MP	O.I.	C.G.	H.G.
18.7	99.5	22.7	At3g44610	823587	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA	O.I.	C.G.	H.G.
18.6	99.5	240.1	At4g29735	829095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
18.6	99.5	31.3	At5g13480	831191	FY	Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal.	O.I.	C.G.	H.G.
18.3	99.5	110.5	At5g43580	834378	serine-type endopeptidase inhibitor	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
18.3	99.5	15.7	At1g10810	837624	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
18.1	99.5	837.0	At3g49010	824062	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).	O.I.	C.G.	H.G.
17.8	99.5	96.4	At1g53400	841776	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
17.8	99.5	76.7	At1g52910	841724	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.7	99.5	14.2	At5g57420	835848	IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33)	Belongs to auxin inducible gene family.	O.I.	C.G.	H.G.

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GSM ID	GSM226531
Assay name	L1SB
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226531 Assay name L1SB GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226531

Assay name L1SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function