CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226530

Assay name LCOLUMELLASB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3176.9 100.0 46.5 At3g27590 822381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
2480.0 100.0 153.3 At2g46130 819220 WRKY43 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
2364.4 100.0 133.9 At5g06650 830553 GIS2 (GLABROUS INFLORESCENCE STEMS 2) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:trichome differentiation, response to gibberellin stimulus, response to cytokinin stimulus, regulation of transcription;C:intracellular;POM O.I. C.G. H.G.
1435.3 100.0 15.8 At2g15190 3768611 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1424.2 100.0 42.9 At1g35143 840400 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1359.7 100.0 36.4 At3g45820 823725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1165.0 100.0 24.5 At3g31403 3769191 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1109.2 100.0 44.1 At1g62490 842546 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
1085.4 100.0 18.3 At1g26860 837037 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1083.8 100.0 29.5 At1g42610 3767264 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1065.9 100.0 20.7 At4g12270 826835 copper amine oxidase family protein F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBPOMA O.I. C.G. H.G.
1036.7 100.0 80.5 At3g15490 820788 unknown protein F:unknown;P:biological_process unknown;C:unknown;PFOM O.I. C.G. H.G.
983.2 100.0 23.0 At3g42400 823236 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
954.7 100.0 457.3 At3g14340 820654 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
945.2 100.0 32.6 At4g17930 827518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
829.0 100.0 28.9 At4g01340 828062 CHP-rich zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
826.8 100.0 26.6 At2g27570 817303 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPBOF O.I. C.G. H.G.
793.3 100.0 31.8 At5g61050 836226 histone deacetylase-related / HD-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
774.8 100.0 28.5 At5g28810 832997 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFA O.I. C.G. H.G.
764.3 100.0 74.6 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
738.9 100.0 23.0 At4g36370 829789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
724.5 100.0 113.6 At1g80740 844413 CMT1 (CHROMOMETHYLASE 1) ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. O.I. C.G. H.G.
721.3 100.0 36.8 At4g22370 828332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
717.3 100.0 29.2 At2g15360 816028 galactoside 2-alpha-L-fucosyltransferase F:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;P O.I. C.G. H.G.
702.4 100.0 30.8 At3g29800 822695 AAA-type ATPase family F:ATPase activity, ATP binding;P:biological_process unknown;C:endomembrane system;PFMOBAV O.I. C.G. H.G.
696.8 100.0 10.9 At4g03990 825711 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
674.1 100.0 25.0 At2g22710 816801 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
671.4 100.0 27.1 At2g04720 3767876 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
659.3 100.0 94.0 At4g24430 828545 lyase F:lyase activity;P:biological_process unknown;C:plasma membrane;PFB O.I. C.G. H.G.
654.7 100.0 62.8 At4g01190 828066 ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10) Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems. O.I. C.G. H.G.
654.3 100.0 32.2 At1g75360 843872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB O.I. C.G. H.G.
651.7 100.0 43.0 At1g41860 840797 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
651.1 100.0 43.5 At2g37800 818357 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF O.I. C.G. H.G.
629.5 100.0 32.0 At2g21000 3767874 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
614.2 100.0 31.0 At3g31540 822919 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
613.9 100.0 14.7 At2g12230 3768490 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
596.9 100.0 45.6 At3g12810 820463 PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). O.I. C.G. H.G.
592.3 100.0 23.6 At2g04380 814977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
590.9 100.0 31.8 At5g41860 834191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
588.7 100.0 39.9 At4g19910 2745716 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:membrane;PBMO O.I. C.G. H.G.
587.9 100.0 49.9 At3g45540 823695 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPF O.I. C.G. H.G.
583.7 100.0 149.2 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
579.6 100.0 33.5 At1g50870 841509 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
571.5 100.0 46.3 At3g13140 820502 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:cellular_component unknown;PFMBO O.I. C.G. H.G.
547.9 100.0 32.2 At2g23400 816872 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:unknown;OBAFMP O.I. C.G. H.G.
541.9 100.0 28.9 At2g11130 3768370 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
535.0 100.0 117.1 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV O.I. C.G. H.G.
510.2 100.0 22.2 At2g12170 815687 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
507.4 100.0 44.6 At4g04650 825798 - F:molecular_function unknown;P:response to cold;C:stromule;P O.I. C.G. H.G.
503.0 100.0 41.0 At3g03660 821196 WOX11 (WUSCHEL related homeobox 11) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. O.I. C.G. H.G.
503.0 100.0 16.0 At4g03760 3770477 transposable element gene pseudogene of unknown protein O.I. C.G. H.G.
500.8 100.0 32.6 At2g45350 819143 CRR4 (CHLORORESPIRATORY REDUCTION 4) Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast. O.I. C.G. H.G.
499.0 100.0 78.4 At4g17785 827500 MYB39 (myb domain protein 39) Encodes a putative transcription factor (MYB39). O.I. C.G. H.G.
498.9 100.0 15.1 At5g50500 835118 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
476.5 100.0 33.2 At1g64410 842750 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
472.6 100.0 27.3 At2g01920 814723 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
469.6 100.0 30.0 At4g30300 829153 ATNAP15 member of NAP subfamily O.I. C.G. H.G.
450.3 100.0 34.8 At1g02670 839532 DNA repair protein, putative F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:DNA repair;C:cellular_component unknown;BMFOPVA O.I. C.G. H.G.
449.2 100.0 17.3 At2g03320 814861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
444.3 100.0 46.7 At4g19940 827738 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
441.6 100.0 24.5 At2g26620 817203 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
433.3 100.0 24.6 At3g06895 819875 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
428.9 100.0 200.9 At1g13020 837859 eukaryotic translation initiation factor, putative (EIF4B5) F:translation initiation factor activity;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. C.G. H.G.
423.0 100.0 67.2 At3g02390 820514 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
421.6 100.0 16.4 At2g05080 815056 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
419.0 100.0 46.0 At4g15250 827191 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;PO O.I. C.G. H.G.
418.4 100.0 30.9 At2g27630 817309 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POBMF O.I. C.G. H.G.
406.5 100.0 26.2 At2g04840 815028 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
406.2 100.0 33.9 At4g19000 827636 IWS1 C-terminus family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
406.1 100.0 56.4 At2g17000 816203 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFPA O.I. C.G. H.G.
405.9 100.0 29.5 At1g53325 841767 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
405.8 100.0 40.9 At5g57570 835861 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO O.I. C.G. H.G.
404.5 100.0 23.1 At5g50470 835115 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
396.5 100.0 28.7 At1g50530 841475 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
391.2 100.0 37.2 At4g02660 828210 WD-40 repeat family protein / beige-related F:binding;P:signal transduction;C:chloroplast;MBOFPA O.I. C.G. H.G.
389.4 100.0 39.9 At4g36000 829756 - F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PMFBOV O.I. C.G. H.G.
381.0 100.0 34.9 At2g27240 817266 unknown protein F:unknown;P:biological_process unknown;C:unknown;PBOF O.I. C.G. H.G.
379.3 100.0 12.3 At3g32280 823000 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFO O.I. C.G. H.G.
376.9 100.0 49.6 At2g14060 815891 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
376.8 100.0 32.2 At5g44970 834528 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
373.9 100.0 28.3 At3g42240 823205 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
373.4 100.0 29.9 At1g15990 838169 ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7) member of Cyclic nucleotide gated channel family O.I. C.G. H.G.
371.3 100.0 19.8 At3g32300 3769265 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
369.2 100.0 45.6 At4g28410 828958 aminotransferase-related F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
368.4 100.0 63.4 At3g13965 3768858 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
368.0 100.0 46.1 At2g37810 818358 CHP-rich zinc finger protein, putative F:unknown;P:unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
364.1 100.0 29.0 At5g45200 834556 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
363.8 100.0 23.2 At3g52700 824436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
363.3 100.0 14.9 At2g10465 815506 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
362.8 100.0 37.3 At3g42590 823271 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
360.5 100.0 51.8 At5g39900 833987 GTP binding / GTPase/ translation elongation factor F:GTP binding, translation elongation factor activity, GTPase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
358.6 100.0 30.9 At2g37290 818306 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:chloroplast;MOBFPVA O.I. C.G. H.G.
358.1 100.0 33.9 At5g44900 834520 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, N-terminal protein myristoylation, defense response, innate immune response;C:intrinsic to membrane;PO O.I. C.G. H.G.
356.4 100.0 33.2 At1g11220 837663 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
355.7 100.0 37.3 At1g07460 837258 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:anchored to membrane;PBO O.I. C.G. H.G.
354.6 100.0 39.6 At4g25920 828698 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
353.4 100.0 63.9 At5g20370 832159 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
351.4 100.0 59.8 At3g53770 824544 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:response to stress;C:unknown;P O.I. C.G. H.G.
347.4 100.0 41.4 At1g01450 837060 protein kinase-related F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
347.2 100.0 41.8 At1g01690 839243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
3176.9	100.0	46.5	At3g27590	822381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
2480.0	100.0	153.3	At2g46130	819220	WRKY43	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
2364.4	100.0	133.9	At5g06650	830553	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:trichome differentiation, response to gibberellin stimulus, response to cytokinin stimulus, regulation of transcription;C:intracellular;POM	O.I.	C.G.	H.G.
1435.3	100.0	15.8	At2g15190	3768611	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1424.2	100.0	42.9	At1g35143	840400	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1359.7	100.0	36.4	At3g45820	823725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1165.0	100.0	24.5	At3g31403	3769191	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1109.2	100.0	44.1	At1g62490	842546	mitochondrial transcription termination factor-related / mTERF-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
1085.4	100.0	18.3	At1g26860	837037	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1083.8	100.0	29.5	At1g42610	3767264	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1065.9	100.0	20.7	At4g12270	826835	copper amine oxidase family protein	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBPOMA	O.I.	C.G.	H.G.
1036.7	100.0	80.5	At3g15490	820788	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PFOM	O.I.	C.G.	H.G.
983.2	100.0	23.0	At3g42400	823236	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
954.7	100.0	457.3	At3g14340	820654	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
945.2	100.0	32.6	At4g17930	827518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
829.0	100.0	28.9	At4g01340	828062	CHP-rich zinc finger protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
826.8	100.0	26.6	At2g27570	817303	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPBOF	O.I.	C.G.	H.G.
793.3	100.0	31.8	At5g61050	836226	histone deacetylase-related / HD-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
774.8	100.0	28.5	At5g28810	832997	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFA	O.I.	C.G.	H.G.
764.3	100.0	74.6	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
738.9	100.0	23.0	At4g36370	829789	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
724.5	100.0	113.6	At1g80740	844413	CMT1 (CHROMOMETHYLASE 1)	ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.	O.I.	C.G.	H.G.
721.3	100.0	36.8	At4g22370	828332	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
717.3	100.0	29.2	At2g15360	816028	galactoside 2-alpha-L-fucosyltransferase	F:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;P	O.I.	C.G.	H.G.
702.4	100.0	30.8	At3g29800	822695	AAA-type ATPase family	F:ATPase activity, ATP binding;P:biological_process unknown;C:endomembrane system;PFMOBAV	O.I.	C.G.	H.G.
696.8	100.0	10.9	At4g03990	825711	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
674.1	100.0	25.0	At2g22710	816801	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
671.4	100.0	27.1	At2g04720	3767876	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
659.3	100.0	94.0	At4g24430	828545	lyase	F:lyase activity;P:biological_process unknown;C:plasma membrane;PFB	O.I.	C.G.	H.G.
654.7	100.0	62.8	At4g01190	828066	ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10)	Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems.	O.I.	C.G.	H.G.
654.3	100.0	32.2	At1g75360	843872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB	O.I.	C.G.	H.G.
651.7	100.0	43.0	At1g41860	840797	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
651.1	100.0	43.5	At2g37800	818357	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
629.5	100.0	32.0	At2g21000	3767874	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
614.2	100.0	31.0	At3g31540	822919	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
613.9	100.0	14.7	At2g12230	3768490	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
596.9	100.0	45.6	At3g12810	820463	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1)	Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).	O.I.	C.G.	H.G.
592.3	100.0	23.6	At2g04380	814977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
590.9	100.0	31.8	At5g41860	834191	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
588.7	100.0	39.9	At4g19910	2745716	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:membrane;PBMO	O.I.	C.G.	H.G.
587.9	100.0	49.9	At3g45540	823695	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPF	O.I.	C.G.	H.G.
583.7	100.0	149.2	At4g28890	829010	protein binding / ubiquitin-protein ligase/ zinc ion binding	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
579.6	100.0	33.5	At1g50870	841509	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
571.5	100.0	46.3	At3g13140	820502	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:cellular_component unknown;PFMBO	O.I.	C.G.	H.G.
547.9	100.0	32.2	At2g23400	816872	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:unknown;OBAFMP	O.I.	C.G.	H.G.
541.9	100.0	28.9	At2g11130	3768370	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
535.0	100.0	117.1	At5g19410	832061	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV	O.I.	C.G.	H.G.
510.2	100.0	22.2	At2g12170	815687	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
507.4	100.0	44.6	At4g04650	825798	-	F:molecular_function unknown;P:response to cold;C:stromule;P	O.I.	C.G.	H.G.
503.0	100.0	41.0	At3g03660	821196	WOX11 (WUSCHEL related homeobox 11)	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	O.I.	C.G.	H.G.
503.0	100.0	16.0	At4g03760	3770477	transposable element gene	pseudogene of unknown protein	O.I.	C.G.	H.G.
500.8	100.0	32.6	At2g45350	819143	CRR4 (CHLORORESPIRATORY REDUCTION 4)	Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast.	O.I.	C.G.	H.G.
499.0	100.0	78.4	At4g17785	827500	MYB39 (myb domain protein 39)	Encodes a putative transcription factor (MYB39).	O.I.	C.G.	H.G.
498.9	100.0	15.1	At5g50500	835118	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
476.5	100.0	33.2	At1g64410	842750	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
472.6	100.0	27.3	At2g01920	814723	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
469.6	100.0	30.0	At4g30300	829153	ATNAP15	member of NAP subfamily	O.I.	C.G.	H.G.
450.3	100.0	34.8	At1g02670	839532	DNA repair protein, putative	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:DNA repair;C:cellular_component unknown;BMFOPVA	O.I.	C.G.	H.G.
449.2	100.0	17.3	At2g03320	814861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
444.3	100.0	46.7	At4g19940	827738	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
441.6	100.0	24.5	At2g26620	817203	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
433.3	100.0	24.6	At3g06895	819875	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
428.9	100.0	200.9	At1g13020	837859	eukaryotic translation initiation factor, putative (EIF4B5)	F:translation initiation factor activity;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	C.G.	H.G.
423.0	100.0	67.2	At3g02390	820514	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
421.6	100.0	16.4	At2g05080	815056	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
419.0	100.0	46.0	At4g15250	827191	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;PO	O.I.	C.G.	H.G.
418.4	100.0	30.9	At2g27630	817309	ubiquitin carboxyl-terminal hydrolase-related	F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POBMF	O.I.	C.G.	H.G.
406.5	100.0	26.2	At2g04840	815028	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
406.2	100.0	33.9	At4g19000	827636	IWS1 C-terminus family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
406.1	100.0	56.4	At2g17000	816203	mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFPA	O.I.	C.G.	H.G.
405.9	100.0	29.5	At1g53325	841767	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
405.8	100.0	40.9	At5g57570	835861	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
404.5	100.0	23.1	At5g50470	835115	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
396.5	100.0	28.7	At1g50530	841475	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
391.2	100.0	37.2	At4g02660	828210	WD-40 repeat family protein / beige-related	F:binding;P:signal transduction;C:chloroplast;MBOFPA	O.I.	C.G.	H.G.
389.4	100.0	39.9	At4g36000	829756	-	F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PMFBOV	O.I.	C.G.	H.G.
381.0	100.0	34.9	At2g27240	817266	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PBOF	O.I.	C.G.	H.G.
379.3	100.0	12.3	At3g32280	823000	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
376.9	100.0	49.6	At2g14060	815891	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
376.8	100.0	32.2	At5g44970	834528	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
373.9	100.0	28.3	At3g42240	823205	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
373.4	100.0	29.9	At1g15990	838169	ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7)	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.
371.3	100.0	19.8	At3g32300	3769265	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
369.2	100.0	45.6	At4g28410	828958	aminotransferase-related	F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
368.4	100.0	63.4	At3g13965	3768858	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
368.0	100.0	46.1	At2g37810	818358	CHP-rich zinc finger protein, putative	F:unknown;P:unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
364.1	100.0	29.0	At5g45200	834556	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
363.8	100.0	23.2	At3g52700	824436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
363.3	100.0	14.9	At2g10465	815506	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
362.8	100.0	37.3	At3g42590	823271	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
360.5	100.0	51.8	At5g39900	833987	GTP binding / GTPase/ translation elongation factor	F:GTP binding, translation elongation factor activity, GTPase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
358.6	100.0	30.9	At2g37290	818306	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.
358.1	100.0	33.9	At5g44900	834520	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, N-terminal protein myristoylation, defense response, innate immune response;C:intrinsic to membrane;PO	O.I.	C.G.	H.G.
356.4	100.0	33.2	At1g11220	837663	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
355.7	100.0	37.3	At1g07460	837258	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:anchored to membrane;PBO	O.I.	C.G.	H.G.
354.6	100.0	39.6	At4g25920	828698	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
353.4	100.0	63.9	At5g20370	832159	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
351.4	100.0	59.8	At3g53770	824544	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:response to stress;C:unknown;P	O.I.	C.G.	H.G.
347.4	100.0	41.4	At1g01450	837060	protein kinase-related	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
347.2	100.0	41.8	At1g01690	839243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.

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GSM ID	GSM226530
Assay name	LCOLUMELLASB
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226530 Assay name LCOLUMELLASB GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226530

Assay name LCOLUMELLASB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function