CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM218594

Assay name Whole roots 3.5hr KNO3 treated then frozen, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
249.4 100.0 105.4 At5g63450 836464 CYP94B1 member of CYP94B O.I. C.G. H.G.
249.3 100.0 70.7 At2g30660 817616 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
236.7 100.0 55.1 At5g52020 835277 AP2 domain-containing protein encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
228.3 100.0 163.9 At4g19750 827719 glycosyl hydrolase family 18 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA O.I. C.G. H.G.
222.8 100.0 337.8 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
211.8 100.0 290.2 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
190.0 100.0 349.1 At2g19970 816516 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO O.I. C.G. H.G.
168.5 100.0 136.7 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
166.0 100.0 127.7 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
143.8 99.9 201.1 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
126.0 99.9 215.1 At2g19990 816518 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive. O.I. C.G. H.G.
123.9 99.9 32.2 At2g02580 814788 CYP71B9 member of CYP71B O.I. C.G. H.G.
123.7 99.9 31.9 At1g09950 837529 transcription factor-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
118.6 99.9 72.3 At1g12610 837817 DDF1 (DWARF AND DELAYED FLOWERING 1) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor. O.I. C.G. H.G.
115.7 99.9 412.4 At1g74950 843834 TIFY10B F:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;P O.I. C.G. H.G.
113.2 99.9 74.5 At5g14650 831317 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
101.1 99.9 133.4 At5g65300 836655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
95.4 99.9 227.7 At3g13650 820569 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
89.0 99.9 143.4 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
86.1 99.9 43.9 At1g65680 842879 ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
85.7 99.9 43.8 At2g31940 817752 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
83.4 99.9 154.1 At5g62520 836372 SRO5 (SIMILAR TO RCD ONE 5) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. O.I. C.G. H.G.
82.0 99.9 142.1 At1g66500 842968 zinc finger (C2H2-type) family protein F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP O.I. C.G. H.G.
80.6 99.9 38.3 At3g61400 825312 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein O.I. C.G. H.G.
76.8 99.9 162.7 At5g12340 831109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
75.2 99.9 94.6 At3g53600 824528 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF O.I. C.G. H.G.
74.0 99.9 55.3 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins O.I. C.G. H.G.
73.2 99.9 20.8 At2g46940 819308 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
70.8 99.9 142.9 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF O.I. C.G. H.G.
68.4 99.9 31.3 At3g47980 823953 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP O.I. C.G. H.G.
67.0 99.8 46.7 At5g65140 836638 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:response to cadmium ion, trehalose biosynthetic process;C:unknown;BPMOFA O.I. C.G. H.G.
66.6 99.8 378.9 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
66.5 99.8 149.6 At2g01150 814644 RHA2B (RING-H2 FINGER PROTEIN 2B) Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils. O.I. C.G. H.G.
64.7 99.8 23.3 At4g22620 828358 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
64.3 99.8 141.0 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
64.0 99.8 143.3 At1g20823 838674 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV O.I. C.G. H.G.
62.9 99.8 192.2 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
61.3 99.8 151.9 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
61.3 99.8 137.9 At3g62260 825399 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA O.I. C.G. H.G.
59.9 99.8 141.1 At2g18210 816336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
59.1 99.8 102.8 At5g10300 830894 MES5 (METHYL ESTERASE 5) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
58.9 99.8 205.3 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
58.7 99.8 42.5 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
56.9 99.8 165.9 At3g23190 821897 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
55.4 99.8 51.7 At2g47950 819407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
55.2 99.8 73.5 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
53.0 99.8 362.5 At4g30140 829137 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
52.8 99.8 84.4 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. O.I. C.G. H.G.
52.5 99.8 137.0 At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
52.2 99.8 15.5 At1g78360 844172 ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
51.5 99.8 39.3 At3g16330 820880 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.9 99.8 99.0 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family O.I. C.G. H.G.
50.4 99.8 86.6 At1g67920 843120 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.0 99.8 329.8 At1g44800 841044 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BOPAM O.I. C.G. H.G.
49.2 99.8 86.5 At1g78070 844142 - F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFO O.I. C.G. H.G.
49.1 99.8 56.6 At4g35150 829667 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO O.I. C.G. H.G.
48.1 99.8 106.3 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
48.1 99.8 22.4 At2g02250 814756 AtPP2-B2 (Phloem protein 2-B2) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
47.3 99.8 54.5 At1g66400 842958 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV O.I. C.G. H.G.
46.4 99.8 91.2 At5g59490 836068 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
46.1 99.8 93.9 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
46.1 99.8 47.8 At5g48070 834859 XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. O.I. C.G. H.G.
46.0 99.8 63.7 At2g46510 819262 ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR) Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive. O.I. C.G. H.G.
45.8 99.8 232.0 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
45.8 99.8 30.2 At2g22850 816816 AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF O.I. C.G. H.G.
45.5 99.8 57.5 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
45.3 99.8 49.2 At3g04530 819609 PPCK2 Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light. O.I. C.G. H.G.
44.5 99.8 40.0 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
44.1 99.8 384.4 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
44.1 99.8 29.4 At2g21900 816726 WRKY59 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
42.8 99.8 42.8 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
42.5 99.8 84.9 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
42.3 99.8 80.1 At4g37430 829897 CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2) Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily. O.I. C.G. H.G.
42.2 99.8 19.2 At5g22550 832317 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.7 99.8 389.8 At1g19180 838501 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
39.6 99.8 17.1 At2g01430 814671 ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOV O.I. C.G. H.G.
38.6 99.8 384.7 At5g13420 831183 transaldolase, putative F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF O.I. C.G. H.G.
38.5 99.8 133.9 At5g19110 832031 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
37.7 99.7 70.4 At5g45440 834580 disease resistance protein-related F:ATP binding;P:apoptosis;C:cellular_component unknown;PFB O.I. C.G. H.G.
37.6 99.7 44.4 At2g34140 817975 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
37.2 99.7 187.9 At5g45110 834545 NPR3 (NPR1-LIKE PROTEIN 3) Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. O.I. C.G. H.G.
36.6 99.7 31.8 At1g70130 843349 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
36.0 99.7 281.3 At3g14940 820723 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. O.I. C.G. H.G.
35.8 99.7 139.0 At1g67750 843100 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
35.7 99.7 599.5 At3g50970 824261 LTI30 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. O.I. C.G. H.G.
35.7 99.7 266.1 At1g01720 839265 ATAF1 Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA. O.I. C.G. H.G.
35.7 99.7 148.6 At3g25780 822169 AOC3 (ALLENE OXIDE CYCLASE 3) Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. O.I. C.G. H.G.
34.6 99.7 41.5 At3g53150 824481 UGT73D1 (UDP-glucosyl transferase 73D1) F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
34.3 99.7 82.4 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. O.I. C.G. H.G.
34.2 99.7 136.0 At1g11670 837711 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:N-terminal protein myristoylation, multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
34.1 99.7 51.4 At1g78050 844140 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
33.6 99.7 98.4 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. O.I. C.G. H.G.
33.6 99.7 31.2 At4g32950 829432 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
32.9 99.7 91.2 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB O.I. C.G. H.G.
32.9 99.7 27.8 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
31.8 99.7 190.8 At5g11070 830974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.3 99.7 43.7 At1g14780 838043 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
31.1 99.7 38.6 At3g06490 819827 MYB108 (myb domain protein 108) putative transcription factor MYB108 (MYB108) mRNA, O.I. C.G. H.G.
29.6 99.7 31.3 At3g13090 820497 ATMRP8 member of MRP subfamily O.I. C.G. H.G.
29.3 99.7 67.2 At5g14760 831328 AO (L-ASPARTATE OXIDASE) At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2 O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
249.4	100.0	105.4	At5g63450	836464	CYP94B1	member of CYP94B	O.I.	C.G.	H.G.
249.3	100.0	70.7	At2g30660	817616	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	F:catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
236.7	100.0	55.1	At5g52020	835277	AP2 domain-containing protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
228.3	100.0	163.9	At4g19750	827719	glycosyl hydrolase family 18 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA	O.I.	C.G.	H.G.
222.8	100.0	337.8	At4g22610	828357	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
211.8	100.0	290.2	At2g30670	817617	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
190.0	100.0	349.1	At2g19970	816516	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO	O.I.	C.G.	H.G.
168.5	100.0	136.7	At5g22555	832318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
166.0	100.0	127.7	At5g41280	834129	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
143.8	99.9	201.1	At5g22570	832320	WRKY38	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
126.0	99.9	215.1	At2g19990	816518	PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)	Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.	O.I.	C.G.	H.G.
123.9	99.9	32.2	At2g02580	814788	CYP71B9	member of CYP71B	O.I.	C.G.	H.G.
123.7	99.9	31.9	At1g09950	837529	transcription factor-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
118.6	99.9	72.3	At1g12610	837817	DDF1 (DWARF AND DELAYED FLOWERING 1)	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.	O.I.	C.G.	H.G.
115.7	99.9	412.4	At1g74950	843834	TIFY10B	F:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;P	O.I.	C.G.	H.G.
113.2	99.9	74.5	At5g14650	831317	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
101.1	99.9	133.4	At5g65300	836655	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
95.4	99.9	227.7	At3g13650	820569	disease resistance response	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
89.0	99.9	143.4	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
86.1	99.9	43.9	At1g65680	842879	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
85.7	99.9	43.8	At2g31940	817752	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
83.4	99.9	154.1	At5g62520	836372	SRO5 (SIMILAR TO RCD ONE 5)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	O.I.	C.G.	H.G.
82.0	99.9	142.1	At1g66500	842968	zinc finger (C2H2-type) family protein	F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP	O.I.	C.G.	H.G.
80.6	99.9	38.3	At3g61400	825312	2-oxoglutarate-dependent dioxygenase, putative	1-aminocyclopropane-1-carboxylate oxidase-like protein	O.I.	C.G.	H.G.
76.8	99.9	162.7	At5g12340	831109	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
75.2	99.9	94.6	At3g53600	824528	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF	O.I.	C.G.	H.G.
74.0	99.9	55.3	At3g27070	822325	TOM20-1 (translocase outer membrane 20-1)	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	O.I.	C.G.	H.G.
73.2	99.9	20.8	At2g46940	819308	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
70.8	99.9	142.9	At1g29020	839776	calcium-binding EF hand family protein	F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF	O.I.	C.G.	H.G.
68.4	99.9	31.3	At3g47980	823953	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP	O.I.	C.G.	H.G.
67.0	99.8	46.7	At5g65140	836638	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:response to cadmium ion, trehalose biosynthetic process;C:unknown;BPMOFA	O.I.	C.G.	H.G.
66.6	99.8	378.9	At1g30510	839930	ATRFNR2 (ROOT FNR 2)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
66.5	99.8	149.6	At2g01150	814644	RHA2B (RING-H2 FINGER PROTEIN 2B)	Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.	O.I.	C.G.	H.G.
64.7	99.8	23.3	At4g22620	828358	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
64.3	99.8	141.0	At1g24280	839044	G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
64.0	99.8	143.3	At1g20823	838674	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV	O.I.	C.G.	H.G.
62.9	99.8	192.2	At2g22860	816817	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
61.3	99.8	151.9	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
61.3	99.8	137.9	At3g62260	825399	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA	O.I.	C.G.	H.G.
59.9	99.8	141.1	At2g18210	816336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
59.1	99.8	102.8	At5g10300	830894	MES5 (METHYL ESTERASE 5)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
58.9	99.8	205.3	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
58.7	99.8	42.5	At5g52670	835344	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.9	99.8	165.9	At3g23190	821897	lesion inducing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
55.4	99.8	51.7	At2g47950	819407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
55.2	99.8	73.5	At3g12230	820403	scpl14 (serine carboxypeptidase-like 14)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
53.0	99.8	362.5	At4g30140	829137	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
52.8	99.8	84.4	At1g55120	841955	ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)	Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
52.5	99.8	137.0	At2g44840	819093	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
52.2	99.8	15.5	At1g78360	844172	ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
51.5	99.8	39.3	At3g16330	820880	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.9	99.8	99.0	At3g27170	822336	CLC-B (CHLORIDE CHANNEL B)	member of Anion channel protein family	O.I.	C.G.	H.G.
50.4	99.8	86.6	At1g67920	843120	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.0	99.8	329.8	At1g44800	841044	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
49.2	99.8	86.5	At1g78070	844142	-	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFO	O.I.	C.G.	H.G.
49.1	99.8	56.6	At4g35150	829667	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO	O.I.	C.G.	H.G.
48.1	99.8	106.3	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
48.1	99.8	22.4	At2g02250	814756	AtPP2-B2 (Phloem protein 2-B2)	F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.3	99.8	54.5	At1g66400	842958	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV	O.I.	C.G.	H.G.
46.4	99.8	91.2	At5g59490	836068	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
46.1	99.8	93.9	At5g56980	835800	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
46.1	99.8	47.8	At5g48070	834859	XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)	putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.	O.I.	C.G.	H.G.
46.0	99.8	63.7	At2g46510	819262	ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)	Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.	O.I.	C.G.	H.G.
45.8	99.8	232.0	At4g34410	829591	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
45.8	99.8	30.2	At2g22850	816816	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF	O.I.	C.G.	H.G.
45.5	99.8	57.5	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
45.3	99.8	49.2	At3g04530	819609	PPCK2	Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light.	O.I.	C.G.	H.G.
44.5	99.8	40.0	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
44.1	99.8	384.4	At1g49860	841409	ATGSTF14	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
44.1	99.8	29.4	At2g21900	816726	WRKY59	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
42.8	99.8	42.8	At5g52710	835348	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
42.5	99.8	84.9	At4g18340	827561	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
42.3	99.8	80.1	At4g37430	829897	CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)	Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.	O.I.	C.G.	H.G.
42.2	99.8	19.2	At5g22550	832317	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.7	99.8	389.8	At1g19180	838501	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
39.6	99.8	17.1	At2g01430	814671	ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOV	O.I.	C.G.	H.G.
38.6	99.8	384.7	At5g13420	831183	transaldolase, putative	F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF	O.I.	C.G.	H.G.
38.5	99.8	133.9	At5g19110	832031	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
37.7	99.7	70.4	At5g45440	834580	disease resistance protein-related	F:ATP binding;P:apoptosis;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
37.6	99.7	44.4	At2g34140	817975	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
37.2	99.7	187.9	At5g45110	834545	NPR3 (NPR1-LIKE PROTEIN 3)	Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays.	O.I.	C.G.	H.G.
36.6	99.7	31.8	At1g70130	843349	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
36.0	99.7	281.3	At3g14940	820723	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.	O.I.	C.G.	H.G.
35.8	99.7	139.0	At1g67750	843100	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
35.7	99.7	599.5	At3g50970	824261	LTI30 (LOW TEMPERATURE-INDUCED 30)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.	O.I.	C.G.	H.G.
35.7	99.7	266.1	At1g01720	839265	ATAF1	Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.	O.I.	C.G.	H.G.
35.7	99.7	148.6	At3g25780	822169	AOC3 (ALLENE OXIDE CYCLASE 3)	Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.	O.I.	C.G.	H.G.
34.6	99.7	41.5	At3g53150	824481	UGT73D1 (UDP-glucosyl transferase 73D1)	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
34.3	99.7	82.4	At5g11920	831065	AtcwINV6 (6-&1-fructan exohydrolase)	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
34.2	99.7	136.0	At1g11670	837711	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:N-terminal protein myristoylation, multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
34.1	99.7	51.4	At1g78050	844140	PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)	F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
33.6	99.7	98.4	At5g56080	835707	NAS2 (NICOTIANAMINE SYNTHASE 2)	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	O.I.	C.G.	H.G.
33.6	99.7	31.2	At4g32950	829432	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
32.9	99.7	91.2	At3g03670	821193	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB	O.I.	C.G.	H.G.
32.9	99.7	27.8	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
31.8	99.7	190.8	At5g11070	830974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.3	99.7	43.7	At1g14780	838043	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
31.1	99.7	38.6	At3g06490	819827	MYB108 (myb domain protein 108)	putative transcription factor MYB108 (MYB108) mRNA,	O.I.	C.G.	H.G.
29.6	99.7	31.3	At3g13090	820497	ATMRP8	member of MRP subfamily	O.I.	C.G.	H.G.
29.3	99.7	67.2	At5g14760	831328	AO (L-ASPARTATE OXIDASE)	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	O.I.	C.G.	H.G.

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GSM ID	GSM218594
Assay name	Whole roots 3.5hr KNO3 treated then frozen, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM218594 Assay name Whole roots 3.5hr KNO3 treated then frozen, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM218594

Assay name Whole roots 3.5hr KNO3 treated then frozen, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root