Microarray experiments to specifically-expressed genes

GSM ID GSM218586
Assay name Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2
GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
452.9100.0138.3At5g28610832960-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBO.I.C.G.H.G.
253.8100.0282.2At1g19210838504AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
245.9100.0246.1At1g66500842968zinc finger (C2H2-type) family proteinF:zinc ion binding;P:biological_process unknown;C:intracellular;MFOPO.I.C.G.H.G.
232.4100.0104.3At1g56660842121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
209.1100.0286.7At3g10930820264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
184.5100.0207.5At5g28630832966glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
183.4100.044.4At1g07150837226MAPKKK13member of MEKK subfamilyO.I.C.G.H.G.
173.5100.087.4At1g12610837817DDF1 (DWARF AND DELAYED FLOWERING 1)Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.O.I.C.G.H.G.
169.1100.0266.5At3g02840821225immediate-early fungal elicitor family proteinF:binding;P:response to other organism, response to ozone;C:unknown;POO.I.C.G.H.G.
160.499.9487.2At1g05575837061unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
148.799.9218.4At1g20823838674zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVO.I.C.G.H.G.
132.199.9186.0At5g66650836797unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOAO.I.C.G.H.G.
130.099.9768.7At5g59820836103RHL41 (RESPONSIVE TO HIGH LIGHT 41)Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.O.I.C.G.H.G.
118.799.9165.7At4g27654828878unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
118.299.9308.1At5g59730836094ATEXO70H7 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
112.199.989.5At1g31050839991transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
109.999.9167.8At5g64905836614PROPEP3 (Elicitor peptide 3 precursor)F:molecular_function unknown;P:defense response, response to salicylic acid stimulus;C:cellular_component unknown;PMO.I.C.G.H.G.
102.799.947.0At5g22530832314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
101.399.973.4At3g25730822164AP2 domain-containing transcription factor, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;POO.I.C.G.H.G.
99.299.9242.3At2g30040817555MAPKKK14member of MEKK subfamilyO.I.C.G.H.G.
94.499.941.5At3g614008253122-oxoglutarate-dependent dioxygenase, putative1-aminocyclopropane-1-carboxylate oxidase-like proteinO.I.C.G.H.G.
90.499.9196.0At2g42760818876unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
89.899.964.2At3g28580822488AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to abscisic acid stimulus;C:endoplasmic reticulum;OMBFPAVO.I.C.G.H.G.
87.399.9250.2At3g19240821458-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPMO.I.C.G.H.G.
85.299.929.6At1g61550842449S-locus protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
81.499.9241.4At1g76650843998calcium-binding EF hand family proteinF:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOBO.I.C.G.H.G.
80.599.9449.0At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFO.I.C.G.H.G.
73.699.946.3At5g50120835077transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
72.099.9493.4At5g05410830424DREB2AEncodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress–inducible genes.O.I.C.G.H.G.
71.499.947.7At4g14980827157-F:unknown;P:intracellular signaling cascade;C:unknown;POMFO.I.C.G.H.G.
70.099.946.5At5g52670835344heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
68.299.9217.4At3g61190825291BAP1 (BON ASSOCIATION PROTEIN 1)Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.O.I.C.G.H.G.
67.499.830.8At5g58680835982armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
66.399.8258.2At3g43800823491ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
65.599.829.9At2g24130816947leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
64.999.8139.3At4g35985829753senescence/dehydration-associated protein-relatedF:unknown;P:unknown;C:chloroplast;MPFOO.I.C.G.H.G.
64.499.840.0At1g19025838484DNA cross-link repair protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFBOPAO.I.C.G.H.G.
64.099.854.2At4g33440829481glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
63.999.8271.3At4g11280826730ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6)encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene familyO.I.C.G.H.G.
62.499.8401.9At2g40000818588HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
59.599.870.8At1g11330837675S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
59.099.8144.0At3g52450824410PUB22 (PLANT U-BOX 22)Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.O.I.C.G.H.G.
59.099.8107.1At5g20110832133dynein light chain, putativeF:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPFO.I.C.G.H.G.
57.099.874.4At2g30080817559ZIP6member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.O.I.C.G.H.G.
56.799.8132.5At1g24280839044G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.O.I.C.G.H.G.
54.399.8455.5At1g32920840186unknown proteinF:molecular_function unknown;P:response to wounding;C:endomembrane system;PO.I.C.G.H.G.
53.999.8204.8At4g17500827464ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
53.999.863.1At3g49860824148ATARLA1B (ADP-ribosylation factor-like A1B)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.C.G.H.G.
53.299.8367.6At3g44190823541pyridine nucleotide-disulphide oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMPO.I.C.G.H.G.
52.599.847.1At2g17660816273nitrate-responsive NOI protein, putativeF:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;POO.I.C.G.H.G.
52.299.8342.8At5g416708341696-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAVO.I.C.G.H.G.
52.099.8247.3At4g34410829591RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
51.899.828.5At2g04500814991DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POMO.I.C.G.H.G.
51.499.823.4At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOO.I.C.G.H.G.
50.399.874.9At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
49.399.832.5At4g15690827246glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
49.299.8123.6At3g62260825399protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVAO.I.C.G.H.G.
48.999.898.8At1g61360842430S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
47.899.843.0At5g38700833860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
47.799.8358.6At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
47.599.845.4At5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
45.599.8103.6At3g28340822462GATL10 (Galacturonosyltransferase-like 10)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
45.599.838.8At3g13090820497ATMRP8member of MRP subfamilyO.I.C.G.H.G.
44.199.852.2At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
43.999.885.3At2g39510818536nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
43.899.849.9At5g58690835983phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.H.G.
43.799.853.2At3g18710821402PUB29 (PLANT U-BOX 29)Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.
43.699.846.9At4g27657828879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
43.399.86.0At1g63030842606ddf2 (DWARF AND DELAYED FLOWERING 2)encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.O.I.C.G.H.G.
40.499.889.8At1g72360843568ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
40.399.8124.0At2g050503767735catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
40.299.8311.7At1g80840844423WRKY40Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.O.I.C.G.H.G.
39.599.8293.2At1g44800841044nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:membrane;BOPAMO.I.C.G.H.G.
38.999.8155.0At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
38.999.842.1At4g36710829824transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOO.I.C.G.H.G.
38.499.883.9At3g47510823905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.399.824.0At5g28650832971WRKY74member of WRKY Transcription Factor; Group II-dO.I.C.G.H.G.
38.199.871.7At1g55120841955ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.O.I.C.G.H.G.
38.099.833.6At1g72240843556unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
37.699.794.8At4g01430826685nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMFO.I.C.G.H.G.
37.599.7261.5At3g46620823815zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVBO.I.C.G.H.G.
37.599.7147.9At2g46400819248WRKY46member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
37.399.782.4At1g16370838207OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOAO.I.C.G.H.G.
37.199.729.6At2g20625816589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.699.771.6At2g18560816371UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
35.999.722.6At3g49690824131MYB84 (MYB DOMAIN PROTEIN 84)"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. "O.I.C.G.H.G.
35.699.721.0At1g64920842800glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
35.499.7110.8At5g42380834244CML37 (CALMODULIN LIKE 37)F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBVO.I.C.G.H.G.
35.499.793.6At5g62630836384HIPL2 (HIPL2 PROTEIN PRECURSOR)F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;BOPMAFO.I.C.G.H.G.
35.399.740.5At3g11020820273DREB2B (DRE/CRT-BINDING PROTEIN 2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A.O.I.C.G.H.G.
34.899.730.6At4g25380828641zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
34.699.7426.5At1g641908427246-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAVO.I.C.G.H.G.
34.599.734.9At3g25400822124-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAFO.I.C.G.H.G.
34.499.7114.1At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
34.499.732.0At3g25570822144adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
34.299.7140.3At1g74930843832ORA47encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
34.299.761.2At2g16720816173MYB7 (MYB DOMAIN PROTEIN 7)Encodes a member of MYB3R- and R2R3- type MYB- encoding genesO.I.C.G.H.G.
34.199.717.7At5g39785833974structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBVO.I.C.G.H.G.
33.999.767.7At5g23760832441heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMPFABVO.I.C.G.H.G.
33.999.741.9At5g09980830859PROPEP4 (Elicitor peptide 4 precursor)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;PO.I.C.G.H.G.



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