CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM218585

Assay name Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
407.4 100.0 776.4 At1g05575 837061 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
200.4 100.0 280.7 At3g10930 820264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
182.0 100.0 115.7 At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
166.5 100.0 196.2 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
165.9 100.0 230.7 At1g20823 838674 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV O.I. C.G. H.G.
136.0 99.9 75.8 At5g28610 832960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB O.I. C.G. H.G.
131.2 99.9 202.9 At1g19210 838504 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
117.6 99.9 175.5 At5g66650 836797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA O.I. C.G. H.G.
107.7 99.9 212.7 At3g02840 821225 immediate-early fungal elicitor family protein F:binding;P:response to other organism, response to ozone;C:unknown;PO O.I. C.G. H.G.
105.6 99.9 597.3 At5g05410 830424 DREB2A Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes. O.I. C.G. H.G.
101.6 99.9 542.7 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
90.8 99.9 31.3 At1g07150 837226 MAPKKK13 member of MEKK subfamily O.I. C.G. H.G.
88.6 99.9 634.6 At5g59820 836103 RHL41 (RESPONSIVE TO HIGH LIGHT 41) Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. O.I. C.G. H.G.
84.2 99.9 123.8 At1g16370 838207 OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA O.I. C.G. H.G.
81.3 99.9 285.9 At3g43800 823491 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
79.8 99.9 32.3 At1g59730 842266 ATH7 (thioredoxin H-type 7) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
79.3 99.9 149.4 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
78.0 99.9 486.2 At1g19020 838483 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
76.1 99.9 123.3 At1g72360 843568 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
74.6 99.9 210.1 At2g30040 817555 MAPKKK14 member of MEKK subfamily O.I. C.G. H.G.
74.0 99.9 531.9 At1g32920 840186 unknown protein F:molecular_function unknown;P:response to wounding;C:endomembrane system;P O.I. C.G. H.G.
72.2 99.9 48.3 At3g07600 819951 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV O.I. C.G. H.G.
69.7 99.9 261.0 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
68.7 99.9 47.7 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
67.4 99.8 89.6 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA O.I. C.G. H.G.
66.2 99.8 92.5 At2g47270 819340 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
64.8 99.8 47.6 At5g57510 835855 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
64.4 99.8 128.5 At5g64905 836614 PROPEP3 (Elicitor peptide 3 precursor) F:molecular_function unknown;P:defense response, response to salicylic acid stimulus;C:cellular_component unknown;PM O.I. C.G. H.G.
63.5 99.8 328.9 At4g24380 828540 unknown protein F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB O.I. C.G. H.G.
63.4 99.8 20.2 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
59.9 99.8 15.6 At5g49620 835024 AtMYB78 (myb domain protein 78) Member of the R2R3 factor gene family. O.I. C.G. H.G.
59.5 99.8 52.8 At1g56660 842121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
58.5 99.8 24.3 At2g44580 819066 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
58.3 99.8 382.0 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF O.I. C.G. H.G.
57.9 99.8 203.8 At3g19240 821458 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM O.I. C.G. H.G.
52.4 99.8 108.0 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. O.I. C.G. H.G.
51.1 99.8 351.8 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. C.G. H.G.
47.6 99.8 16.6 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
47.4 99.8 123.2 At5g27920 832858 F-box family protein F:ubiquitin-protein ligase activity;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
45.4 99.8 278.0 At5g08640 830765 FLS (FLAVONOL SYNTHASE) Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. O.I. C.G. H.G.
44.5 99.8 36.3 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
44.5 99.8 9.8 At1g66030 842916 CYP96A14P encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
44.1 99.8 7.4 At4g05240 825872 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PMO O.I. C.G. H.G.
43.6 99.8 123.7 At3g52450 824410 PUB22 (PLANT U-BOX 22) Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. O.I. C.G. H.G.
43.5 99.8 173.3 At1g77450 844081 anac032 (Arabidopsis NAC domain containing protein 32) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
43.1 99.8 354.7 At4g21830 828271 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
42.8 99.8 233.6 At4g24160 828516 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.
42.3 99.8 220.0 At5g11070 830974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.6 99.8 172.7 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
41.4 99.8 425.0 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
41.1 99.8 770.7 At2g23120 816844 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
40.7 99.8 78.0 At5g66440 836776 unknown protein F:molecular_function unknown;P:unknown;C:unknown;POM O.I. C.G. H.G.
39.7 99.8 814.6 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
39.2 99.8 63.6 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
39.0 99.8 110.1 At3g62260 825399 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA O.I. C.G. H.G.
39.0 99.8 3.4 At4g07620 3770532 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
38.9 99.8 102.6 At1g16170 838186 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.7 99.8 316.7 At2g40000 818588 HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
38.6 99.8 9.0 At1g43040 840903 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
37.7 99.7 20.6 At3g63050 825480 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.4 99.7 112.1 At2g19590 816478 ACO1 (ACC OXIDASE 1) encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase O.I. C.G. H.G.
36.4 99.7 27.9 At4g15690 827246 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
36.1 99.7 74.0 At2g25160 817054 CYP82F1 member of CYP82F O.I. C.G. H.G.
35.5 99.7 11.4 At1g35515 840446 HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10) Encodes a nuclear localized R2R3-type MYB transcription factor that is involved in responses to abiotic stress including cold acclimation,osmotic and salt stress.Mutants are sensitive to salt, freezing and osmotic stress. O.I. C.G. H.G.
35.3 99.7 155.1 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
35.2 99.7 93.1 At1g66500 842968 zinc finger (C2H2-type) family protein F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP O.I. C.G. H.G.
35.0 99.7 5.8 At3g45820 823725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.8 99.7 368.1 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
34.7 99.7 2.4 At2g05450 3768432 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
34.2 99.7 42.1 At5g09980 830859 PROPEP4 (Elicitor peptide 4 precursor) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;P O.I. C.G. H.G.
33.6 99.7 198.6 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
33.2 99.7 19.5 At2g31180 817674 MYB14 (MYB DOMAIN PROTEIN 14) Member of the R2R3 factor gene family. O.I. C.G. H.G.
32.9 99.7 60.0 At2g16720 816173 MYB7 (MYB DOMAIN PROTEIN 7) Encodes a member of MYB3R- and R2R3- type MYB- encoding genes O.I. C.G. H.G.
32.9 99.7 38.1 At1g12610 837817 DDF1 (DWARF AND DELAYED FLOWERING 1) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor. O.I. C.G. H.G.
32.7 99.7 222.2 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
32.6 99.7 11.1 At2g27270 817269 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.5 99.7 93.5 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
32.1 99.7 180.3 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P O.I. C.G. H.G.
31.9 99.7 48.5 At3g49860 824148 ATARLA1B (ADP-ribosylation factor-like A1B) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. O.I. C.G. H.G.
31.9 99.7 31.9 At4g14980 827157 - F:unknown;P:intracellular signaling cascade;C:unknown;POMF O.I. C.G. H.G.
31.7 99.7 59.4 At2g47520 819365 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
31.6 99.7 185.7 At5g51040 835177 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPM O.I. C.G. H.G.
31.2 99.7 97.1 At2g41230 818722 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
31.0 99.7 108.4 At4g23810 828481 WRKY53 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
30.5 99.7 75.7 At1g61820 842479 BGLU46 (BETA GLUCOSIDASE 46) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
30.5 99.7 26.8 At2g20625 816589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.3 99.7 311.5 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
30.1 99.7 22.4 At1g59940 842288 ARR3 (RESPONSE REGULATOR 3) Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. O.I. C.G. H.G.
30.0 99.7 32.2 At5g44350 834461 ethylene-responsive nuclear protein -related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
29.9 99.7 43.6 At4g33985 829545 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.8 99.7 73.9 At3g47510 823905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
29.6 99.7 42.2 At2g16980 816201 tetracycline transporter F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF O.I. C.G. H.G.
29.6 99.7 30.2 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
29.4 99.7 37.3 At2g30540 817603 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
29.2 99.7 103.9 At1g59590 842249 ZCF37 ZCF37 mRNA, complete cds O.I. C.G. H.G.
29.2 99.7 7.8 At1g63600 842665 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF O.I. C.G. H.G.
28.8 99.7 27.8 At4g25380 828641 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
28.4 99.7 735.4 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
28.4 99.7 282.6 At2g31490 817707 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P O.I. C.G. H.G.
28.4 99.7 132.4 At1g15010 838066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
407.4	100.0	776.4	At1g05575	837061	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
200.4	100.0	280.7	At3g10930	820264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
182.0	100.0	115.7	At5g24410	832512	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
166.5	100.0	196.2	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
165.9	100.0	230.7	At1g20823	838674	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV	O.I.	C.G.	H.G.
136.0	99.9	75.8	At5g28610	832960	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB	O.I.	C.G.	H.G.
131.2	99.9	202.9	At1g19210	838504	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
117.6	99.9	175.5	At5g66650	836797	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA	O.I.	C.G.	H.G.
107.7	99.9	212.7	At3g02840	821225	immediate-early fungal elicitor family protein	F:binding;P:response to other organism, response to ozone;C:unknown;PO	O.I.	C.G.	H.G.
105.6	99.9	597.3	At5g05410	830424	DREB2A	Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes.	O.I.	C.G.	H.G.
101.6	99.9	542.7	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
90.8	99.9	31.3	At1g07150	837226	MAPKKK13	member of MEKK subfamily	O.I.	C.G.	H.G.
88.6	99.9	634.6	At5g59820	836103	RHL41 (RESPONSIVE TO HIGH LIGHT 41)	Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.	O.I.	C.G.	H.G.
84.2	99.9	123.8	At1g16370	838207	OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA	O.I.	C.G.	H.G.
81.3	99.9	285.9	At3g43800	823491	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
79.8	99.9	32.3	At1g59730	842266	ATH7 (thioredoxin H-type 7)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
79.3	99.9	149.4	At5g22570	832320	WRKY38	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
78.0	99.9	486.2	At1g19020	838483	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
76.1	99.9	123.3	At1g72360	843568	ethylene-responsive element-binding protein, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
74.6	99.9	210.1	At2g30040	817555	MAPKKK14	member of MEKK subfamily	O.I.	C.G.	H.G.
74.0	99.9	531.9	At1g32920	840186	unknown protein	F:molecular_function unknown;P:response to wounding;C:endomembrane system;P	O.I.	C.G.	H.G.
72.2	99.9	48.3	At3g07600	819951	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV	O.I.	C.G.	H.G.
69.7	99.9	261.0	At2g47550	819368	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
68.7	99.9	47.7	At5g48175	834870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
67.4	99.8	89.6	At2g29870	817537	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:membrane;BPMOFA	O.I.	C.G.	H.G.
66.2	99.8	92.5	At2g47270	819340	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
64.8	99.8	47.6	At5g57510	835855	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
64.4	99.8	128.5	At5g64905	836614	PROPEP3 (Elicitor peptide 3 precursor)	F:molecular_function unknown;P:defense response, response to salicylic acid stimulus;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
63.5	99.8	328.9	At4g24380	828540	unknown protein	F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB	O.I.	C.G.	H.G.
63.4	99.8	20.2	At5g52690	835346	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.9	99.8	15.6	At5g49620	835024	AtMYB78 (myb domain protein 78)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
59.5	99.8	52.8	At1g56660	842121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
58.5	99.8	24.3	At2g44580	819066	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
58.3	99.8	382.0	At4g29780	829100	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MPF	O.I.	C.G.	H.G.
57.9	99.8	203.8	At3g19240	821458	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM	O.I.	C.G.	H.G.
52.4	99.8	108.0	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	O.I.	C.G.	H.G.
51.1	99.8	351.8	At1g80840	844423	WRKY40	Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	C.G.	H.G.
47.6	99.8	16.6	At4g24180	828519	-	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
47.4	99.8	123.2	At5g27920	832858	F-box family protein	F:ubiquitin-protein ligase activity;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
45.4	99.8	278.0	At5g08640	830765	FLS (FLAVONOL SYNTHASE)	Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.	O.I.	C.G.	H.G.
44.5	99.8	36.3	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
44.5	99.8	9.8	At1g66030	842916	CYP96A14P	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
44.1	99.8	7.4	At4g05240	825872	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
43.6	99.8	123.7	At3g52450	824410	PUB22 (PLANT U-BOX 22)	Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.	O.I.	C.G.	H.G.
43.5	99.8	173.3	At1g77450	844081	anac032 (Arabidopsis NAC domain containing protein 32)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.1	99.8	354.7	At4g21830	828271	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
42.8	99.8	233.6	At4g24160	828516	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
42.3	99.8	220.0	At5g11070	830974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.6	99.8	172.7	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
41.4	99.8	425.0	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
41.1	99.8	770.7	At2g23120	816844	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
40.7	99.8	78.0	At5g66440	836776	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;POM	O.I.	C.G.	H.G.
39.7	99.8	814.6	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
39.2	99.8	63.6	At4g22460	828341	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
39.0	99.8	110.1	At3g62260	825399	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA	O.I.	C.G.	H.G.
39.0	99.8	3.4	At4g07620	3770532	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
38.9	99.8	102.6	At1g16170	838186	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.7	99.8	316.7	At2g40000	818588	HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)	F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
38.6	99.8	9.0	At1g43040	840903	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
37.7	99.7	20.6	At3g63050	825480	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.4	99.7	112.1	At2g19590	816478	ACO1 (ACC OXIDASE 1)	encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase	O.I.	C.G.	H.G.
36.4	99.7	27.9	At4g15690	827246	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
36.1	99.7	74.0	At2g25160	817054	CYP82F1	member of CYP82F	O.I.	C.G.	H.G.
35.5	99.7	11.4	At1g35515	840446	HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10)	Encodes a nuclear localized R2R3-type MYB transcription factor that is involved in responses to abiotic stress including cold acclimation,osmotic and salt stress.Mutants are sensitive to salt, freezing and osmotic stress.	O.I.	C.G.	H.G.
35.3	99.7	155.1	At5g15120	831364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
35.2	99.7	93.1	At1g66500	842968	zinc finger (C2H2-type) family protein	F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP	O.I.	C.G.	H.G.
35.0	99.7	5.8	At3g45820	823725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.8	99.7	368.1	At4g30170	829140	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
34.7	99.7	2.4	At2g05450	3768432	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
34.2	99.7	42.1	At5g09980	830859	PROPEP4 (Elicitor peptide 4 precursor)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
33.6	99.7	198.6	At4g34410	829591	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
33.2	99.7	19.5	At2g31180	817674	MYB14 (MYB DOMAIN PROTEIN 14)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
32.9	99.7	60.0	At2g16720	816173	MYB7 (MYB DOMAIN PROTEIN 7)	Encodes a member of MYB3R- and R2R3- type MYB- encoding genes	O.I.	C.G.	H.G.
32.9	99.7	38.1	At1g12610	837817	DDF1 (DWARF AND DELAYED FLOWERING 1)	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.	O.I.	C.G.	H.G.
32.7	99.7	222.2	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
32.6	99.7	11.1	At2g27270	817269	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.5	99.7	93.5	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
32.1	99.7	180.3	At4g10270	826619	wound-responsive family protein	F:molecular_function unknown;P:response to wounding;C:unknown;P	O.I.	C.G.	H.G.
31.9	99.7	48.5	At3g49860	824148	ATARLA1B (ADP-ribosylation factor-like A1B)	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	O.I.	C.G.	H.G.
31.9	99.7	31.9	At4g14980	827157	-	F:unknown;P:intracellular signaling cascade;C:unknown;POMF	O.I.	C.G.	H.G.
31.7	99.7	59.4	At2g47520	819365	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
31.6	99.7	185.7	At5g51040	835177	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPM	O.I.	C.G.	H.G.
31.2	99.7	97.1	At2g41230	818722	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
31.0	99.7	108.4	At4g23810	828481	WRKY53	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
30.5	99.7	75.7	At1g61820	842479	BGLU46 (BETA GLUCOSIDASE 46)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
30.5	99.7	26.8	At2g20625	816589	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.3	99.7	311.5	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
30.1	99.7	22.4	At1g59940	842288	ARR3 (RESPONSE REGULATOR 3)	Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	O.I.	C.G.	H.G.
30.0	99.7	32.2	At5g44350	834461	ethylene-responsive nuclear protein -related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
29.9	99.7	43.6	At4g33985	829545	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.8	99.7	73.9	At3g47510	823905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
29.6	99.7	42.2	At2g16980	816201	tetracycline transporter	F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF	O.I.	C.G.	H.G.
29.6	99.7	30.2	At5g52670	835344	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.4	99.7	37.3	At2g30540	817603	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
29.2	99.7	103.9	At1g59590	842249	ZCF37	ZCF37 mRNA, complete cds	O.I.	C.G.	H.G.
29.2	99.7	7.8	At1g63600	842665	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF	O.I.	C.G.	H.G.
28.8	99.7	27.8	At4g25380	828641	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
28.4	99.7	735.4	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
28.4	99.7	282.6	At2g31490	817707	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P	O.I.	C.G.	H.G.
28.4	99.7	132.4	At1g15010	838066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.

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GSM ID	GSM218585
Assay name	Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM218585 Assay name Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM218585

Assay name Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root