CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM195225

Assay name Shoot

GSE experiment GSE7951: Genome-wide gene expression profiling of rice stigma

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
155.1 100.0 7.9 Os01g0952800 AK073385.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e-1 At1g48770 unknown protein O.I. C.G. H.G.
61.5 99.9 0.2 Os12g0236100 9640.m01291 - Conserved hypothetical protein 6e+0 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. C.G. H.G.
60.3 99.9 0.6 Os06g0295000 9634.m01843 - Hypothetical protein 1e+0 At5g37560 zinc ion binding O.I. C.G. H.G.
60.0 99.9 1.3 Os04g0578600 AK068159.1 - Ferric reductase-like transmembrane componentfamily protein 3e-1 At2g31150 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism O.I. C.G. H.G.
59.4 99.9 2.6 Os05g0519300 AK110584.1 - Uncharacterized plant-specific protein DUF506domain containing protein 3e+0 At5g44450 methyltransferase O.I. C.G. H.G.
53.7 99.9 31.6 Os12g0282000 AK103636.1 - Hypothetical protein 8e+0 At5g63634 unknown protein O.I. C.G. H.G.
48.3 99.9 25.8 Os03g0431800 AK062942.1 - Hypothetical protein 1e+1 At5g62165 AGL42 (AGAMOUS LIKE 42) O.I. C.G. H.G.
44.7 99.9 7.8 Os01g0959200 AU100845 - Abscisic stress ripening protein 1 1e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) O.I. C.G. H.G.
44.2 99.9 0.5 Os12g0236200 AK108399.1 - Hypothetical protein 5e-1 At1g32520 unknown protein O.I. C.G. H.G.
42.0 99.9 26.4 Os03g0725200 AK106493.1 - Hypothetical protein 3e-1 At4g08230 glycine-rich protein O.I. C.G. H.G.
35.1 99.8 76.6 Os07g0258400 AK103557.1 - Metal transporter Nramp6 (AtNramp6) 2e-8 At1g80830 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) O.I. C.G. H.G.
33.2 99.8 1.5 Os03g0751100 BU673383 - - 5e-28 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) O.I. C.G. H.G.
32.6 99.8 20.2 Os10g0330400 AK099421.1 - Protein of unknown function DUF179 family protein 6e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. C.G. H.G.
28.0 99.6 16.9 Os03g0379300 AK068704.1 - - 1e-1 At4g26940 galactosyltransferase family protein O.I. C.G. H.G.
26.7 99.6 22.3 Os11g0262600 AB053296.1 - Hypothetical protein 2e+0 At3g49120 PRXCB (PEROXIDASE CB) O.I. C.G. H.G.
26.7 99.6 5.2 Os01g0382000 AK107926.1 - Pathogenesis-related protein 1 precursor (PR-1) 2e+0 At1g01310 allergen V5/Tpx-1-related family protein O.I. C.G. H.G.
25.5 99.5 17.4 Os01g0689300 CF316434 - Protein of unknown function HHE domain containingprotein 4e-26 At3g18290 EMB2454 (embryo defective 2454) O.I. C.G. H.G.
25.3 99.5 11.1 Os05g0551000 AK068028.1 - Protein of unknown function HHE domain containingprotein 4e-16 At3g18290 EMB2454 (embryo defective 2454) O.I. C.G. H.G.
23.3 99.4 0.4 Os03g0293700 9631.m01795 - - 3e-1 At5g66800 unknown protein O.I. C.G. H.G.
22.1 99.3 20.7 Os01g0655500 AK120660.1 - Protein kinase domain containing protein 1e-10 At5g53450 ORG1 (OBP3-responsive gene 1) O.I. C.G. H.G.
21.2 99.2 1.0 Os01g0602400 AK107349.1 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 6e-2 At3g14650 CYP72A11 O.I. C.G. H.G.
19.6 99.1 10.0 Os10g0491000 AK100816.1 - Plant Basic Secretory Protein family protein 2e+0 At2g15220 secretory protein, putative O.I. C.G. H.G.
19.0 99.0 1.0 Os02g0579000 AB028180.1 - No apical meristem (NAM) protein domain containingprotein 5e-14 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
155.1	100.0	7.9	Os01g0952800	AK073385.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	3e-1	At1g48770	unknown protein	O.I.	C.G.	H.G.
61.5	99.9	0.2	Os12g0236100	9640.m01291	-	Conserved hypothetical protein	6e+0	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	C.G.	H.G.
60.3	99.9	0.6	Os06g0295000	9634.m01843	-	Hypothetical protein	1e+0	At5g37560	zinc ion binding	O.I.	C.G.	H.G.
60.0	99.9	1.3	Os04g0578600	AK068159.1	-	Ferric reductase-like transmembrane componentfamily protein	3e-1	At2g31150	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	C.G.	H.G.
59.4	99.9	2.6	Os05g0519300	AK110584.1	-	Uncharacterized plant-specific protein DUF506domain containing protein	3e+0	At5g44450	methyltransferase	O.I.	C.G.	H.G.
53.7	99.9	31.6	Os12g0282000	AK103636.1	-	Hypothetical protein	8e+0	At5g63634	unknown protein	O.I.	C.G.	H.G.
48.3	99.9	25.8	Os03g0431800	AK062942.1	-	Hypothetical protein	1e+1	At5g62165	AGL42 (AGAMOUS LIKE 42)	O.I.	C.G.	H.G.
44.7	99.9	7.8	Os01g0959200	AU100845	-	Abscisic stress ripening protein 1	1e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	C.G.	H.G.
44.2	99.9	0.5	Os12g0236200	AK108399.1	-	Hypothetical protein	5e-1	At1g32520	unknown protein	O.I.	C.G.	H.G.
42.0	99.9	26.4	Os03g0725200	AK106493.1	-	Hypothetical protein	3e-1	At4g08230	glycine-rich protein	O.I.	C.G.	H.G.
35.1	99.8	76.6	Os07g0258400	AK103557.1	-	Metal transporter Nramp6 (AtNramp6)	2e-8	At1g80830	NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)	O.I.	C.G.	H.G.
33.2	99.8	1.5	Os03g0751100	BU673383	-	-	5e-28	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	O.I.	C.G.	H.G.
32.6	99.8	20.2	Os10g0330400	AK099421.1	-	Protein of unknown function DUF179 family protein	6e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	C.G.	H.G.
28.0	99.6	16.9	Os03g0379300	AK068704.1	-	-	1e-1	At4g26940	galactosyltransferase family protein	O.I.	C.G.	H.G.
26.7	99.6	22.3	Os11g0262600	AB053296.1	-	Hypothetical protein	2e+0	At3g49120	PRXCB (PEROXIDASE CB)	O.I.	C.G.	H.G.
26.7	99.6	5.2	Os01g0382000	AK107926.1	-	Pathogenesis-related protein 1 precursor (PR-1)	2e+0	At1g01310	allergen V5/Tpx-1-related family protein	O.I.	C.G.	H.G.
25.5	99.5	17.4	Os01g0689300	CF316434	-	Protein of unknown function HHE domain containingprotein	4e-26	At3g18290	EMB2454 (embryo defective 2454)	O.I.	C.G.	H.G.
25.3	99.5	11.1	Os05g0551000	AK068028.1	-	Protein of unknown function HHE domain containingprotein	4e-16	At3g18290	EMB2454 (embryo defective 2454)	O.I.	C.G.	H.G.
23.3	99.4	0.4	Os03g0293700	9631.m01795	-	-	3e-1	At5g66800	unknown protein	O.I.	C.G.	H.G.
22.1	99.3	20.7	Os01g0655500	AK120660.1	-	Protein kinase domain containing protein	1e-10	At5g53450	ORG1 (OBP3-responsive gene 1)	O.I.	C.G.	H.G.
21.2	99.2	1.0	Os01g0602400	AK107349.1	-	Cytochrome P450 monooxygenase CYP72A5 (Fragment)	6e-2	At3g14650	CYP72A11	O.I.	C.G.	H.G.
19.6	99.1	10.0	Os10g0491000	AK100816.1	-	Plant Basic Secretory Protein family protein	2e+0	At2g15220	secretory protein, putative	O.I.	C.G.	H.G.
19.0	99.0	1.0	Os02g0579000	AB028180.1	-	No apical meristem (NAM) protein domain containingprotein	5e-14	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM195225
Assay name	Shoot
GSE experiment	GSE7951: Genome-wide gene expression profiling of rice stigma

Microarray experiments to specifically-expressed genes

GSM ID GSM195225 Assay name Shoot GSE experiment GSE7951: Genome-wide gene expression profiling of rice stigma

GSM ID GSM195225

Assay name Shoot

GSE experiment GSE7951: Genome-wide gene expression profiling of rice stigma