CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM189112

Assay name HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1

GSE experiment GSE7796: Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1799.4 100.0 14.6 At3g19780 821515 - F:unknown;P:unknown;C:endomembrane system;OMBPF O.I. C.G. H.G.
648.8 100.0 11.2 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
638.7 100.0 15.0 At2g12230 3768490 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
538.3 100.0 14.9 At3g45380 823676 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
381.1 100.0 22.0 At5g61050 836226 histone deacetylase-related / HD-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
352.7 100.0 7.7 At2g05450 3768432 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
342.5 100.0 10.3 At1g26860 837037 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
341.5 100.0 8.1 At1g32670 840161 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
314.9 100.0 33.5 At2g12910 3768701 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
295.1 100.0 19.6 At1g39750 3767127 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
275.8 100.0 17.0 At3g32300 3769265 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
269.4 100.0 13.5 At5g59580 836077 UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
268.2 100.0 11.9 At1g63400 842646 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
267.8 100.0 10.4 At4g12270 826835 copper amine oxidase family protein F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBPOMA O.I. C.G. H.G.
232.9 100.0 20.4 At1g77780 844115 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO O.I. C.G. H.G.
219.7 100.0 16.9 At4g14640 827114 CAM8 (CALMODULIN 8) encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. O.I. C.G. H.G.
207.7 100.0 7.7 At4g07620 3770532 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
204.0 100.0 17.8 At3g49520 824114 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
196.6 100.0 10.4 At1g39430 840698 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
194.2 100.0 13.0 At2g06640 3767766 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
191.7 100.0 12.3 At3g42540 823263 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
185.0 100.0 14.1 At2g06110 3768364 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
178.0 100.0 7.1 At4g07550 3770366 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
172.2 100.0 11.3 At3g19890 821526 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
171.6 100.0 9.6 At3g42400 823236 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
169.8 100.0 21.7 At1g01660 839461 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV O.I. C.G. H.G.
165.6 100.0 17.5 At3g20760 821624 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOB O.I. C.G. H.G.
164.3 99.9 18.4 At3g22090 821771 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
163.0 99.9 11.8 At1g43950 840994 ARF23 (AUXIN RESPONSE FACTOR 23) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
158.3 99.9 25.0 At3g43660 823468 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
155.9 99.9 17.8 At4g19850 827729 ATPP2-A2 encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family. O.I. C.G. H.G.
154.8 99.9 12.7 At4g07780 3769957 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
153.4 99.9 16.7 At1g67000 843018 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
153.2 99.9 23.6 At5g13130 831152 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPVBFA O.I. C.G. H.G.
153.1 99.9 20.4 At5g37620 833740 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
152.2 99.9 19.6 At4g07515 826202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
151.2 99.9 19.3 At2g01240 814651 reticulon family protein (RTNLB15) F:unknown;P:biological_process unknown;C:endoplasmic reticulum;PMF O.I. C.G. H.G.
150.2 99.9 16.6 At5g30420 3770955 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
149.6 99.9 15.1 At4g03680 825668 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
147.8 99.9 10.9 At1g42610 3767264 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
146.8 99.9 17.4 At1g11610 837705 CYP71A18 putative cytochrome P450 O.I. C.G. H.G.
146.4 99.9 13.8 At1g35143 840400 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
145.3 99.9 12.1 At1g66610 842979 seven in absentia (SINA) protein, putative F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF O.I. C.G. H.G.
144.9 99.9 15.7 At5g41860 834191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
143.0 99.9 15.4 At3g53910 824558 malate dehydrogenase-related F:L-malate dehydrogenase activity, catalytic activity;P:malate metabolic process, carbohydrate metabolic process;C:endomembrane system;PMBOF O.I. C.G. H.G.
138.7 99.9 17.2 At2g45350 819143 CRR4 (CHLORORESPIRATORY REDUCTION 4) Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast. O.I. C.G. H.G.
136.4 99.9 10.6 At4g03690 825669 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
133.1 99.9 12.9 At4g07700 3770342 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
132.1 99.9 17.2 At2g36700 818242 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
130.5 99.9 14.8 At2g01700 814699 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
128.8 99.9 11.9 At4g00160 828180 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
127.3 99.9 11.7 At5g48200 834873 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
126.8 99.9 25.7 At5g47170 834763 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
125.4 99.9 10.3 At1g31620 840049 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
125.0 99.9 19.6 At1g33090 840205 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
121.9 99.9 25.2 At2g31770 817734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
120.6 99.9 8.6 At2g10465 815506 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
118.3 99.9 18.5 At1g68420 843171 asparaginyl-tRNA synthetase-related F:nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP O.I. C.G. H.G.
111.0 99.9 17.3 At3g50730 824237 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
109.7 99.9 14.1 At1g34575 840361 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
106.8 99.9 7.7 At1g63320 842638 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA O.I. C.G. H.G.
105.3 99.9 15.3 At3g23010 821875 AtRLP36 (Receptor Like Protein 36) F:protein binding;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
104.9 99.9 23.5 At3g13280 820528 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
103.6 99.9 14.6 At3g02940 821178 MYB107 (myb domain protein 107) Encodes a putative transcription factor (MYB107). O.I. C.G. H.G.
102.1 99.9 15.8 At1g37010 840611 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
100.4 99.9 18.2 At2g18970 816414 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
99.9 99.9 4.4 At3g29732 3769027 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
99.7 99.9 18.8 At1g48150 841234 MADS-box protein (AGL74 ) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFMO O.I. C.G. H.G.
97.7 99.9 22.0 At1g48510 841272 cytochrome c oxidase assembly protein surfeit-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB O.I. C.G. H.G.
97.5 99.9 10.6 At2g20805 816610 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
96.1 99.9 16.6 At3g16160 820861 transcription factor F:transcription factor activity;P:unknown;C:cellular_component unknown;OMP O.I. C.G. H.G.
95.6 99.9 14.1 At2g19300 816447 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
95.2 99.9 18.2 At1g06150 837124 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;POMBF O.I. C.G. H.G.
94.1 99.9 9.9 At2g17210 816226 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB O.I. C.G. H.G.
94.1 99.9 7.0 At3g31403 3769191 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
93.4 99.9 13.6 At2g28030 817347 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO O.I. C.G. H.G.
91.8 99.9 20.5 At5g41310 834132 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA O.I. C.G. H.G.
91.5 99.9 22.4 At1g33910 840288 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:unknown;MPOBAFV O.I. C.G. H.G.
91.2 99.9 15.5 At5g11290 831000 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
90.7 99.9 23.0 At2g25360 817075 zinc finger protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
89.8 99.9 11.6 At2g19230 816440 kinase F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
89.0 99.9 14.9 At5g39070 3771369 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
88.8 99.9 13.8 At5g42120 834217 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
88.5 99.9 11.0 At3g18180 821345 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
86.3 99.9 21.3 At3g57130 824880 BOP1 (BLADE ON PETIOLE 1) ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves.Along with bop2, bop1 is required for nectary development and formation of normal abscission zones. O.I. C.G. H.G.
86.3 99.9 12.6 At4g13190 826933 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
86.1 99.9 12.5 At1g47920 841210 syntaxin-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
85.6 99.9 17.6 At1g42580 840863 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
85.0 99.9 12.4 At2g05930 3767925 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
84.9 99.9 27.9 At3g22810 821852 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;OPMBAF O.I. C.G. H.G.
84.9 99.9 14.1 At2g18620 816377 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFAMV O.I. C.G. H.G.
83.6 99.9 9.0 At3g29600 822625 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
83.5 99.9 24.5 At1g16490 838219 MYB58 (MYB DOMAIN PROTEIN 58) Member of the R2R3 factor gene family. O.I. C.G. H.G.
83.0 99.9 18.0 At4g19095 827648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
82.8 99.9 15.2 At5g17150 831579 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
80.4 99.9 10.0 At1g80320 844372 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
80.1 99.9 13.9 At3g09790 820137 UBQ8 encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. O.I. C.G. H.G.
79.6 99.9 18.2 At4g26770 828784 phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groups F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFP O.I. C.G. H.G.
79.3 99.9 9.1 At1g05577 837062 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
79.0 99.9 17.4 At5g12910 831131 histone H3, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1799.4	100.0	14.6	At3g19780	821515	-	F:unknown;P:unknown;C:endomembrane system;OMBPF	O.I.	C.G.	H.G.
648.8	100.0	11.2	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
638.7	100.0	15.0	At2g12230	3768490	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
538.3	100.0	14.9	At3g45380	823676	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
381.1	100.0	22.0	At5g61050	836226	histone deacetylase-related / HD-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
352.7	100.0	7.7	At2g05450	3768432	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
342.5	100.0	10.3	At1g26860	837037	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
341.5	100.0	8.1	At1g32670	840161	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
314.9	100.0	33.5	At2g12910	3768701	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
295.1	100.0	19.6	At1g39750	3767127	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
275.8	100.0	17.0	At3g32300	3769265	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
269.4	100.0	13.5	At5g59580	836077	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
268.2	100.0	11.9	At1g63400	842646	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
267.8	100.0	10.4	At4g12270	826835	copper amine oxidase family protein	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBPOMA	O.I.	C.G.	H.G.
232.9	100.0	20.4	At1g77780	844115	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
219.7	100.0	16.9	At4g14640	827114	CAM8 (CALMODULIN 8)	encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms.	O.I.	C.G.	H.G.
207.7	100.0	7.7	At4g07620	3770532	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
204.0	100.0	17.8	At3g49520	824114	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
196.6	100.0	10.4	At1g39430	840698	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
194.2	100.0	13.0	At2g06640	3767766	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
191.7	100.0	12.3	At3g42540	823263	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
185.0	100.0	14.1	At2g06110	3768364	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
178.0	100.0	7.1	At4g07550	3770366	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
172.2	100.0	11.3	At3g19890	821526	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
171.6	100.0	9.6	At3g42400	823236	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
169.8	100.0	21.7	At1g01660	839461	U-box domain-containing protein	F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV	O.I.	C.G.	H.G.
165.6	100.0	17.5	At3g20760	821624	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOB	O.I.	C.G.	H.G.
164.3	99.9	18.4	At3g22090	821771	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
163.0	99.9	11.8	At1g43950	840994	ARF23 (AUXIN RESPONSE FACTOR 23)	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
158.3	99.9	25.0	At3g43660	823468	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
155.9	99.9	17.8	At4g19850	827729	ATPP2-A2	encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.	O.I.	C.G.	H.G.
154.8	99.9	12.7	At4g07780	3769957	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
153.4	99.9	16.7	At1g67000	843018	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
153.2	99.9	23.6	At5g13130	831152	ATP binding	F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPVBFA	O.I.	C.G.	H.G.
153.1	99.9	20.4	At5g37620	833740	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
152.2	99.9	19.6	At4g07515	826202	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
151.2	99.9	19.3	At2g01240	814651	reticulon family protein (RTNLB15)	F:unknown;P:biological_process unknown;C:endoplasmic reticulum;PMF	O.I.	C.G.	H.G.
150.2	99.9	16.6	At5g30420	3770955	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
149.6	99.9	15.1	At4g03680	825668	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
147.8	99.9	10.9	At1g42610	3767264	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
146.8	99.9	17.4	At1g11610	837705	CYP71A18	putative cytochrome P450	O.I.	C.G.	H.G.
146.4	99.9	13.8	At1g35143	840400	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
145.3	99.9	12.1	At1g66610	842979	seven in absentia (SINA) protein, putative	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF	O.I.	C.G.	H.G.
144.9	99.9	15.7	At5g41860	834191	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
143.0	99.9	15.4	At3g53910	824558	malate dehydrogenase-related	F:L-malate dehydrogenase activity, catalytic activity;P:malate metabolic process, carbohydrate metabolic process;C:endomembrane system;PMBOF	O.I.	C.G.	H.G.
138.7	99.9	17.2	At2g45350	819143	CRR4 (CHLORORESPIRATORY REDUCTION 4)	Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast.	O.I.	C.G.	H.G.
136.4	99.9	10.6	At4g03690	825669	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
133.1	99.9	12.9	At4g07700	3770342	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
132.1	99.9	17.2	At2g36700	818242	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
130.5	99.9	14.8	At2g01700	814699	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
128.8	99.9	11.9	At4g00160	828180	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
127.3	99.9	11.7	At5g48200	834873	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
126.8	99.9	25.7	At5g47170	834763	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
125.4	99.9	10.3	At1g31620	840049	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
125.0	99.9	19.6	At1g33090	840205	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
121.9	99.9	25.2	At2g31770	817734	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
120.6	99.9	8.6	At2g10465	815506	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
118.3	99.9	18.5	At1g68420	843171	asparaginyl-tRNA synthetase-related	F:nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP	O.I.	C.G.	H.G.
111.0	99.9	17.3	At3g50730	824237	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
109.7	99.9	14.1	At1g34575	840361	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
106.8	99.9	7.7	At1g63320	842638	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA	O.I.	C.G.	H.G.
105.3	99.9	15.3	At3g23010	821875	AtRLP36 (Receptor Like Protein 36)	F:protein binding;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
104.9	99.9	23.5	At3g13280	820528	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
103.6	99.9	14.6	At3g02940	821178	MYB107 (myb domain protein 107)	Encodes a putative transcription factor (MYB107).	O.I.	C.G.	H.G.
102.1	99.9	15.8	At1g37010	840611	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
100.4	99.9	18.2	At2g18970	816414	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
99.9	99.9	4.4	At3g29732	3769027	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
99.7	99.9	18.8	At1g48150	841234	MADS-box protein (AGL74 )	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PFMO	O.I.	C.G.	H.G.
97.7	99.9	22.0	At1g48510	841272	cytochrome c oxidase assembly protein surfeit-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB	O.I.	C.G.	H.G.
97.5	99.9	10.6	At2g20805	816610	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
96.1	99.9	16.6	At3g16160	820861	transcription factor	F:transcription factor activity;P:unknown;C:cellular_component unknown;OMP	O.I.	C.G.	H.G.
95.6	99.9	14.1	At2g19300	816447	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
95.2	99.9	18.2	At1g06150	837124	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;POMBF	O.I.	C.G.	H.G.
94.1	99.9	9.9	At2g17210	816226	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB	O.I.	C.G.	H.G.
94.1	99.9	7.0	At3g31403	3769191	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
93.4	99.9	13.6	At2g28030	817347	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFO	O.I.	C.G.	H.G.
91.8	99.9	20.5	At5g41310	834132	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA	O.I.	C.G.	H.G.
91.5	99.9	22.4	At1g33910	840288	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:unknown;MPOBAFV	O.I.	C.G.	H.G.
91.2	99.9	15.5	At5g11290	831000	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
90.7	99.9	23.0	At2g25360	817075	zinc finger protein-related	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
89.8	99.9	11.6	At2g19230	816440	kinase	F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
89.0	99.9	14.9	At5g39070	3771369	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
88.8	99.9	13.8	At5g42120	834217	lectin protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
88.5	99.9	11.0	At3g18180	821345	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
86.3	99.9	21.3	At3g57130	824880	BOP1 (BLADE ON PETIOLE 1)	ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves.Along with bop2, bop1 is required for nectary development and formation of normal abscission zones.	O.I.	C.G.	H.G.
86.3	99.9	12.6	At4g13190	826933	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
86.1	99.9	12.5	At1g47920	841210	syntaxin-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
85.6	99.9	17.6	At1g42580	840863	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
85.0	99.9	12.4	At2g05930	3767925	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
84.9	99.9	27.9	At3g22810	821852	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;OPMBAF	O.I.	C.G.	H.G.
84.9	99.9	14.1	At2g18620	816377	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFAMV	O.I.	C.G.	H.G.
83.6	99.9	9.0	At3g29600	822625	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
83.5	99.9	24.5	At1g16490	838219	MYB58 (MYB DOMAIN PROTEIN 58)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
83.0	99.9	18.0	At4g19095	827648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
82.8	99.9	15.2	At5g17150	831579	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
80.4	99.9	10.0	At1g80320	844372	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
80.1	99.9	13.9	At3g09790	820137	UBQ8	encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.	O.I.	C.G.	H.G.
79.6	99.9	18.2	At4g26770	828784	phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groups	F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFP	O.I.	C.G.	H.G.
79.3	99.9	9.1	At1g05577	837062	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
79.0	99.9	17.4	At5g12910	831131	histone H3, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	O.I.	C.G.	H.G.

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GSM ID	GSM189112
Assay name	HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1
GSE experiment	GSE7796: Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels

Microarray experiments to specifically-expressed genes

GSM ID GSM189112 Assay name HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE experiment GSE7796: Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels

GSM ID GSM189112

Assay name HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1

GSE experiment GSE7796: Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels