Microarray experiments to specifically-expressed genes

GSM ID GSM184932
Assay name Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2
GSE experiment GSE7642: Time course expression analysis of the salt stress response in Arabidopsis roots

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
107.099.9154.4At2g27550817302ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.O.I.C.G.H.G.
102.599.962.4At1g26450839186beta-1,3-glucanase-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVAO.I.C.G.H.G.
94.899.9199.8At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.O.I.C.G.H.G.
84.999.9156.4At5g56080835707NAS2 (NICOTIANAMINE SYNTHASE 2)Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.O.I.C.G.H.G.
83.199.980.3At2g18360816351hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
70.499.970.5At3g48920824053AtMYB45 (myb domain protein 45)Member of the R2R3 factor gene family.O.I.C.G.H.G.
67.199.860.3At3g50400824204GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
66.799.877.1At3g19660821503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
50.299.8158.4At3g04010819556glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.C.G.H.G.
47.699.8156.1At2g37870818363protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
45.299.825.5At4g12330826842CYP706A7member of CYP706AO.I.C.G.H.G.
42.199.842.8At5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
42.099.887.6At1g69260843257AFP1 (ABI FIVE BINDING PROTEIN)F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMFO.I.C.G.H.G.
41.599.879.4At1g51420841567SPP1 (SUCROSE-PHOSPHATASE 1)F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPOO.I.C.G.H.G.
41.499.8164.8At5g13750831220ZIFL1 (ZINC INDUCED FACILITATOR-like 1)F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAPO.I.C.G.H.G.
40.599.816.6At4g10510826643subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFMO.I.C.G.H.G.
39.699.866.6At5g23220832386NIC3 (NICOTINAMIDASE 3)F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFPO.I.C.G.H.G.
37.499.753.8At5g56090835708COX15 (cytochrome c oxidase 15)Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.O.I.C.G.H.G.
37.299.764.5At2g39110818497protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
36.999.7116.8At2g41660818764MIZ1 (mizu-kussei 1)Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.O.I.C.G.H.G.
36.599.7214.8At5g04950830377NAS1 (NICOTIANAMINE SYNTHASE 1)Encodes a nicotianamide synthase.O.I.C.G.H.G.
35.699.725.6At2g29380817487protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVO.I.C.G.H.G.
30.399.787.4At1g68500843179unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.899.717.2At5g24080832473protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
29.599.750.6At1g63440842650HMA5 (HEAVY METAL ATPASE 5)The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed.O.I.C.G.H.G.
28.699.7153.2At3g58550825024protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
28.299.7144.6At2g02850814816ARPN (PLANTACYANIN)Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.O.I.C.G.H.G.
28.199.733.5At1g54540841896-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.699.776.6At5g54440835532unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
26.899.7207.3At1g78340844169ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
26.799.748.0At5g39040833896ATTAP2member of TAP subfamilyO.I.C.G.H.G.
25.799.7100.5At1g56320842085unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
25.699.790.2At5g65990836729amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPOFBAVO.I.C.G.H.G.
25.699.719.6At1g68795843211CLE12 (CLAVATA3/ESR-RELATED 12)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.O.I.C.G.H.G.
25.299.686.8At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.O.I.C.G.H.G.
25.199.6163.4At2g30140817566UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
24.999.6112.9At2g04350814974long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)F:long-chain-fatty-acid-CoA ligase activity, catalytic activity;P:fatty acid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMFPAVO.I.C.G.H.G.
24.999.624.9At5g26010832670catalytic/ protein serine/threonine phosphataseF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
24.999.618.6At1g48000841218MYB112 (myb domain protein 112)Encodes a putative transcription factor (MYB112).O.I.C.G.H.G.
24.799.6145.4At1g18980838479germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOO.I.C.G.H.G.
24.699.6100.9At3g54420824608ATEP3encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.O.I.C.G.H.G.
24.699.622.6At5g54020835485zinc ion bindingF:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.C.G.H.G.
24.299.6190.8At5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.O.I.C.G.H.G.
24.299.624.9At2g22590816790transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
23.299.647.8At1g18100838390E12A11E12A11 protein (E12A11)O.I.C.G.H.G.
22.999.6124.2At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
22.299.6101.2At3g57010824868strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOAO.I.C.G.H.G.
21.899.625.8At1g16310838200cation efflux family proteinF:cation transmembrane transporter activity;P:cation transport;C:membrane;BOFPAMO.I.C.G.H.G.
21.699.611.4At1g48690841291auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMO.I.C.G.H.G.
21.599.6277.1At4g12490826861protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFAO.I.C.G.H.G.
21.499.6104.3At4g33550829494lipid bindingF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
21.499.670.9At5g45070834538AtPP2-A8 (Phloem protein 2-A8)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
21.299.6209.0At1g74020843740SS2 (STRICTOSIDINE SYNTHASE 2)Encodes AtSS-2 strictosidine synthase.O.I.C.G.H.G.
20.799.646.4At1g12560837813ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.O.I.C.G.H.G.
20.699.6137.3At3g14690820697CYP72A15putative cytochrome P450O.I.C.G.H.G.
20.399.627.0At1g68880843221AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFOO.I.C.G.H.G.
20.399.623.7At5g493503771473unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
20.299.652.4At1g54830841922NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOO.I.C.G.H.G.
20.199.654.4At2g44300819038lipid transfer protein-relatedF:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;PO.I.C.G.H.G.
19.299.6133.2At5g06760830565late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFVO.I.C.G.H.G.
19.099.518.4At5g51160835190ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
18.799.540.9At3g14680820696CYP72A14putative cytochrome P450O.I.C.G.H.G.
18.599.520.2At2g34610818026unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
18.499.579.2At3g12700820452aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFOO.I.C.G.H.G.
18.399.524.1At1g68150843143WRKY9member of WRKY Transcription Factor; Group II-bO.I.C.G.H.G.
18.399.523.9At3g27270822346-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;POO.I.C.G.H.G.
18.299.594.7At1g30700839950FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAO.I.C.G.H.G.
18.099.542.9At1g31470840037NFD4 (NUCLEAR FUSION DEFECTIVE 4)F:unknown;P:response to salt stress;C:mitochondrion;PBFOAMO.I.C.G.H.G.
17.999.5112.1At4g05020825844NDB2 (NAD(P)H dehydrogenase B2)F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAMO.I.C.G.H.G.
17.999.550.9At5g50560835124unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.699.590.1At3g15020820731malate dehydrogenase (NAD), mitochondrial, putativeF:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFAO.I.C.G.H.G.
17.699.523.0At3g16330820880unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.299.527.2At2g308408176352-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
17.099.527.5At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
16.999.541.2At4g12580826871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBO.I.C.G.H.G.
16.999.529.4At4g25250828628invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
16.899.521.9At1g49160841339WNK7Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. ItsO.I.C.G.H.G.
16.799.516.6At5g51520835226invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.699.526.0At3g57540824921remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
16.599.578.7At2g19680816487mitochondrial ATP synthase g subunit family proteinF:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrial proton-transporting ATP synthase complex, coupling factor F(o);POO.I.C.G.H.G.
16.599.530.1At3g15300820761VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
16.499.5216.8At3g24170822003ATGR1 (glutathione-disulfide reductase)Encodes a cytosolic glutathione reductase.O.I.C.G.H.G.
16.399.5189.6At3g14940820723ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.O.I.C.G.H.G.
16.199.511.4At3g20960821646CYP705A33member of CYP705AO.I.C.G.H.G.
15.999.5400.1At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.O.I.C.G.H.G.
15.999.525.5At3g04570819613DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;BPMOFVAO.I.C.G.H.G.
15.899.557.5At5g07110830602PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOO.I.C.G.H.G.
15.799.593.3At5g62540836374UBC3 (ubiquitin-conjugating enzyme 3)Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process.O.I.C.G.H.G.
15.799.553.6At3g47510823905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.799.548.2At3g16560820905protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBVO.I.C.G.H.G.
15.799.532.2At4g24140828514hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAVO.I.C.G.H.G.
15.699.5111.7At2g18370816352protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
15.699.543.7At5g58700835984phosphoinositide-specific phospholipase C family proteinF:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MFOPO.I.C.G.H.G.
15.599.5113.5At1g74030843741enolase, putativeF:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAPO.I.C.G.H.G.
15.499.5130.6At1g17180838289ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
15.399.461.6At1g06780837189GAUT6 (Galacturonosyltransferase 6)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
15.399.450.9At4g23050828404protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVAO.I.C.G.H.G.
15.199.490.3At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.099.4115.0At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
14.999.475.9At5g01820831765ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)Encodes a CBL-interacting serine/threonine protein kinase.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage