Microarray experiments to specifically-expressed genes

GSM ID GSM184931
Assay name Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 1
GSE experiment GSE7642: Time course expression analysis of the salt stress response in Arabidopsis roots

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
255.8100.0117.7At3g50400824204GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
98.799.9213.6At3g57010824868strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOAO.I.C.G.H.G.
70.099.9165.7At1g56320842085unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
65.099.825.5At2g43890818993polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
59.699.8158.4At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.O.I.C.G.H.G.
53.599.877.4At2g39110818497protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
50.099.887.2At1g51420841567SPP1 (SUCROSE-PHOSPHATASE 1)F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPOO.I.C.G.H.G.
49.099.851.5At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
45.099.835.3At2g43880818992polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
44.999.8115.9At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.O.I.C.G.H.G.
43.299.841.5At1g54540841896-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.199.8140.4At2g41220818721GLU2 (GLUTAMATE SYNTHASE 2)Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root.O.I.C.G.H.G.
41.099.865.4At1g12560837813ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.O.I.C.G.H.G.
37.899.8118.1At2g41660818764MIZ1 (mizu-kussei 1)Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.O.I.C.G.H.G.
36.399.756.2At1g63440842650HMA5 (HEAVY METAL ATPASE 5)The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed.O.I.C.G.H.G.
34.499.749.3At3g48920824053AtMYB45 (myb domain protein 45)Member of the R2R3 factor gene family.O.I.C.G.H.G.
33.699.772.0At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
33.299.728.8At5g26010832670catalytic/ protein serine/threonine phosphataseF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
32.399.7128.7At2g04350814974long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)F:long-chain-fatty-acid-CoA ligase activity, catalytic activity;P:fatty acid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMFPAVO.I.C.G.H.G.
32.099.725.8At5g54020835485zinc ion bindingF:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.C.G.H.G.
31.899.7267.4At5g416708341696-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAVO.I.C.G.H.G.
31.299.7223.6At1g78340844169ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
31.099.793.0At4g24130828513unknown proteinF:unknown;P:biological_process unknown;C:nucleus;PO.I.C.G.H.G.
29.899.781.4At2g27550817302ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.O.I.C.G.H.G.
29.899.762.7At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
29.299.767.7At1g62980842601ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
28.299.781.5At5g45070834538AtPP2-A8 (Phloem protein 2-A8)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
27.699.7251.8At3g57020824869strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFAO.I.C.G.H.G.
26.399.7273.9At5g55180835611glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
26.299.718.4At1g03700839428-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
25.899.752.9At3g08630820010-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOFVO.I.C.G.H.G.
25.699.7235.6At5g66760836809SDH1-1One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.O.I.C.G.H.G.
25.699.726.6At5g493503771473unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
25.599.7307.5At3g51240824287F3H (FLAVANONE 3-HYDROXYLASE)Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.O.I.C.G.H.G.
25.599.7195.9At5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.O.I.C.G.H.G.
25.299.667.9At1g69260843257AFP1 (ABI FIVE BINDING PROTEIN)F:unknown;P:abscisic acid mediated signaling;C:nucleus;POMFO.I.C.G.H.G.
24.999.6207.9At5g02270831709ATNAP9member of NAP subfamilyO.I.C.G.H.G.
24.999.659.5At2g45750819183dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
24.899.625.2At5g19410832061ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPVO.I.C.G.H.G.
24.699.679.3At1g23440838952pyrrolidone-carboxylate peptidase family proteinF:peptidase activity;P:proteolysis;C:cellular_component unknown;BAOPMFO.I.C.G.H.G.
24.699.655.3At5g13900831237protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
24.599.666.7At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVO.I.C.G.H.G.
24.199.639.9At4g24140828514hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAVO.I.C.G.H.G.
23.899.658.1At4g01630827983ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
23.799.615.9At2g37360818312ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.C.G.H.G.
23.499.6260.4At5g44110834434POP1Encodes a member of the NAP subfamily of ABC transporters.O.I.C.G.H.G.
23.499.6180.8At3g17810821049dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family proteinF:oxidoreductase activity, acting on the CH-CH group of donors, catalytic activity, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity;P:'de novo' pyrimidine base biosynthetic process, UMP biosynthetic process, metabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
23.199.630.8At5g23190832383CYP86B1cytochrome P450 CYP86B1, nuclear gene for chloroplast productO.I.C.G.H.G.
22.999.614.4At1g52660841698ATP bindingF:ATP binding;P:defense response, apoptosis;C:unknown;PBOAMO.I.C.G.H.G.
22.899.685.1At5g65990836729amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPOFBAVO.I.C.G.H.G.
22.699.641.9At2g18360816351hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
22.399.663.2At2g47540819367pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
21.699.657.3At1g79470844285inosine-5'-monophosphate dehydrogenaseF:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPVO.I.C.G.H.G.
21.199.684.9At3g12700820452aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFOO.I.C.G.H.G.
21.099.640.4At1g78050844140PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPAO.I.C.G.H.G.
20.899.6253.7At5g48180834871NSP5 (NITRILE SPECIFIER PROTEIN 5)Encodes a nitrile-specifier protein NSP5. NSP5 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.O.I.C.G.H.G.
20.899.6176.4At1g24180839031IAR4Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900O.I.C.G.H.G.
20.899.6125.5At5g40650834065SDH2-2One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.O.I.C.G.H.G.
20.799.6187.6At5g08640830765FLS (FLAVONOL SYNTHASE)Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.O.I.C.G.H.G.
20.799.6101.7At3g04010819556glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.C.G.H.G.
20.699.6148.2At2g30140817566UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
20.699.6134.9At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
20.599.6133.3At1g16210838189unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVAO.I.C.G.H.G.
20.199.639.5At5g56090835708COX15 (cytochrome c oxidase 15)Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.O.I.C.G.H.G.
19.999.632.4At5g18070831926DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).O.I.C.G.H.G.
19.799.6137.7At3g17940820642aldose 1-epimerase family proteinF:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
19.499.6140.4At1g06000837109UDP-glucoronosyl/UDP-glucosyl transferase family proteinencodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonolsO.I.C.G.H.G.
19.299.628.9At5g54040835487DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
19.199.626.3At1g49960841419xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
18.999.523.5At4g15500827222UGT84A4Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.O.I.C.G.H.G.
18.899.566.1At2g03200814849aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMOO.I.C.G.H.G.
18.899.525.8At2g25620817102protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVAO.I.C.G.H.G.
18.899.517.0At4g29800829102PLP8 (PATATIN-LIKE PROTEIN 8)F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFMO.I.C.G.H.G.
18.499.5160.3At5g642508365462-nitropropane dioxygenase family / NPD familyF:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMAO.I.C.G.H.G.
18.399.5218.1At3g27380822359SDH2-1One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.O.I.C.G.H.G.
17.999.586.2At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
17.899.5123.3At1g18980838479germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOO.I.C.G.H.G.
17.899.512.7At1g61930842488unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.799.5323.3At5g50850835157MAB1 (MACCI-BOU)F:pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity;P:defense response to bacterium;C:mitochondrion, nucleolus, plasma membrane;BOMPFAO.I.C.G.H.G.
17.799.565.7At1g57590842135carboxylesteraseF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
17.699.545.6At1g68850843218peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
17.499.5189.1At1g74020843740SS2 (STRICTOSIDINE SYNTHASE 2)Encodes AtSS-2 strictosidine synthase.O.I.C.G.H.G.
17.399.565.0At1g04220839578KCS2 (3-KETOACYL-COA SYNTHASE 2)Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
17.299.510.8At1g53270841761ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
17.099.5354.8At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
17.099.575.1At1g47250841128PAF2Encodes 20S proteasome subunit PAF2 (PAF2).O.I.C.G.H.G.
16.999.5139.0At2g47770819389benzodiazepine receptor-relatedF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BMOPAFO.I.C.G.H.G.
16.799.5113.6At1g72680843600cinnamyl-alcohol dehydrogenase, putativeF:in 6 functions;P:lignin biosynthetic process;C:unknown;BOPFMAVO.I.C.G.H.G.
16.499.575.9At2g25810817123TIP4F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAO.I.C.G.H.G.
16.399.541.3At4g31750829303WIN2 (HOPW1-1-INTERACTING 2)Encodes HopW1-1-Interacting protein 2 (WIN2). Interacts with the P. syringae effector HopW1-1. WIN2 has protein phosphatase activity. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).O.I.C.G.H.G.
16.399.531.2At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
16.299.591.2At2g37870818363protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
16.199.514.7At5g08250830721cytochrome P450 family proteinF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:cellular_component unknown;MPFBOAVO.I.C.G.H.G.
15.899.524.5At1g26450839186beta-1,3-glucanase-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVAO.I.C.G.H.G.
15.799.585.6At3g27570822379-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
15.799.582.1At2g37250818302ADK (ADENOSINE KINASE)encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growthO.I.C.G.H.G.
15.699.587.6At1g30700839950FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAO.I.C.G.H.G.
15.399.488.1At4g33550829494lipid bindingF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
15.399.418.1At3g05170819681phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMAO.I.C.G.H.G.
15.299.4282.8At1g641908427246-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAVO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage