CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184927

Assay name Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1

GSE experiment GSE7642: Time course expression analysis of the salt stress response in Arabidopsis roots

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
174.3 100.0 135.0 At3g12900 820473 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
98.4 99.9 52.6 At4g31940 829324 CYP82C4 member of CYP82C O.I. C.G. H.G.
75.7 99.9 133.4 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
74.7 99.9 146.7 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. O.I. C.G. H.G.
73.1 99.9 127.6 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. O.I. C.G. H.G.
39.8 99.8 180.7 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
34.6 99.7 186.0 At3g07720 819963 kelch repeat-containing protein F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA O.I. C.G. H.G.
34.2 99.7 72.1 At1g51420 841567 SPP1 (SUCROSE-PHOSPHATASE 1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO O.I. C.G. H.G.
31.3 99.7 107.5 At2g41660 818764 MIZ1 (mizu-kussei 1) Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. O.I. C.G. H.G.
31.0 99.7 185.5 At1g17180 838289 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
30.2 99.7 70.5 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA O.I. C.G. H.G.
28.9 99.7 22.3 At1g05700 837077 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
26.9 99.7 89.6 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
26.3 99.7 45.2 At5g56090 835708 COX15 (cytochrome c oxidase 15) Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor. O.I. C.G. H.G.
26.1 99.7 305.6 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA O.I. C.G. H.G.
25.6 99.7 237.1 At3g14940 820723 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. O.I. C.G. H.G.
25.3 99.6 28.2 At3g02240 820386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.9 99.6 60.1 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.1 99.6 12.8 At4g10510 826643 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM O.I. C.G. H.G.
23.7 99.6 21.2 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
22.8 99.6 78.9 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
22.4 99.6 67.8 At4g26060 828712 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.7 99.6 29.2 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. C.G. H.G.
20.9 99.6 133.9 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
20.6 99.6 42.8 At3g14680 820696 CYP72A14 putative cytochrome P450 O.I. C.G. H.G.
20.4 99.6 45.3 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. O.I. C.G. H.G.
19.7 99.6 81.4 At2g01150 814644 RHA2B (RING-H2 FINGER PROTEIN 2B) Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils. O.I. C.G. H.G.
19.5 99.6 37.0 At3g48920 824053 AtMYB45 (myb domain protein 45) Member of the R2R3 factor gene family. O.I. C.G. H.G.
19.4 99.6 98.4 At3g04010 819556 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB O.I. C.G. H.G.
19.4 99.6 38.8 At2g18360 816351 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
19.3 99.6 36.6 At2g47460 819359 MYB12 (MYB DOMAIN PROTEIN 12) "MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots. O.I. C.G. H.G.
19.1 99.6 129.0 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
18.4 99.5 84.1 At1g23020 838910 FRO3 Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. O.I. C.G. H.G.
18.0 99.5 169.9 At1g78340 844169 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
17.5 99.5 39.5 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.5 99.5 28.8 At5g38820 833873 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
17.4 99.5 148.2 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. O.I. C.G. H.G.
17.4 99.5 21.9 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
17.3 99.5 103.6 At4g33360 829473 terpene cyclase/mutase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, terpenoid metabolic process, metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPFMAV O.I. C.G. H.G.
17.2 99.5 214.8 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM O.I. C.G. H.G.
16.8 99.5 45.7 At1g74760 - - O.I. C.G. H.G.
16.5 99.5 192.7 At5g41670 834169 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV O.I. C.G. H.G.
16.3 99.5 40.2 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. O.I. C.G. H.G.
16.0 99.5 29.6 At3g15300 820761 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
15.7 99.5 108.0 At2g02850 814816 ARPN (PLANTACYANIN) Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. O.I. C.G. H.G.
15.5 99.5 131.2 At3g53480 824516 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
15.5 99.5 115.7 At1g16210 838189 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
15.5 99.5 24.3 At1g26450 839186 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA O.I. C.G. H.G.
15.4 99.5 56.7 At1g49470 841370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
15.4 99.5 11.1 At3g20960 821646 CYP705A33 member of CYP705A O.I. C.G. H.G.
15.0 99.4 90.2 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.0 99.4 47.4 At2g45430 819151 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMFBO O.I. C.G. H.G.
14.6 99.4 91.6 At3g50740 824238 UGT72E1 (UDP-glucosyl transferase 72E1) UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism. O.I. C.G. H.G.
14.6 99.4 46.3 At2g44300 819038 lipid transfer protein-related F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
14.6 99.4 36.4 At4g32650 829400 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1) A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1. O.I. C.G. H.G.
14.4 99.4 51.7 At3g62810 825456 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
14.2 99.4 27.8 At3g50400 824204 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
13.9 99.4 57.8 At1g20070 838596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
13.9 99.4 26.3 At5g48070 834859 XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. O.I. C.G. H.G.
13.8 99.4 136.5 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
13.7 99.4 294.4 At4g26970 828805 aconitate hydratase/ copper ion binding F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP O.I. C.G. H.G.
13.7 99.4 115.0 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
13.7 99.4 79.2 At2g41220 818721 GLU2 (GLUTAMATE SYNTHASE 2) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. O.I. C.G. H.G.
13.6 99.4 105.4 At4g34630 829615 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
13.5 99.4 68.0 At3g12700 820452 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO O.I. C.G. H.G.
13.4 99.4 16.5 At5g37550 833733 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.3 99.4 103.2 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
13.2 99.4 119.9 At5g51040 835177 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPM O.I. C.G. H.G.
13.1 99.4 34.3 At5g63000 836420 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
13.1 99.4 27.9 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.0 99.4 187.7 At2g35120 818078 glycine cleavage system H protein, mitochondrial, putative F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex;BOPMFA O.I. C.G. H.G.
13.0 99.4 105.7 At5g57785 835887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.7 99.3 38.8 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
12.6 99.3 49.7 At3g50260 824188 CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
12.6 99.3 21.2 At3g18170 821344 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
12.5 99.3 104.8 At3g22850 821857 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;BPOM O.I. C.G. H.G.
12.2 99.3 201.0 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. O.I. C.G. H.G.
12.2 99.3 32.5 At4g13235 826940 EDA21 (embryo sac development arrest 21) Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
12.0 99.3 100.0 At1g74030 843741 enolase, putative F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP O.I. C.G. H.G.
11.9 99.3 35.4 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
11.9 99.3 35.3 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. O.I. C.G. H.G.
11.8 99.3 27.9 At4g24140 828514 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV O.I. C.G. H.G.
11.7 99.3 57.1 At3g26690 822281 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates. O.I. C.G. H.G.
11.6 99.3 111.4 At2g30140 817566 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
11.5 99.3 104.5 At5g45110 834545 NPR3 (NPR1-LIKE PROTEIN 3) Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays. O.I. C.G. H.G.
11.5 99.3 72.9 At3g15020 820731 malate dehydrogenase (NAD), mitochondrial, putative F:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFA O.I. C.G. H.G.
11.5 99.3 71.6 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
11.5 99.3 41.1 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
11.5 99.3 30.7 At3g06890 819874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.5 99.3 16.9 At5g26010 832670 catalytic/ protein serine/threonine phosphatase F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
11.4 99.3 143.3 At5g04750 830353 F1F0-ATPase inhibitor protein, putative F:ATPase inhibitor activity;P:unknown;C:unknown;P O.I. C.G. H.G.
11.4 99.3 129.7 At1g17170 838288 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
11.4 99.3 126.0 At5g64250 836546 2-nitropropane dioxygenase family / NPD family F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
11.4 99.3 16.8 At1g51860 841613 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.4 99.3 7.4 At5g01060 831916 protein kinase family protein F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
11.3 99.3 77.1 At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
11.3 99.3 68.4 At3g54420 824608 ATEP3 encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. O.I. C.G. H.G.
11.2 99.2 49.9 At4g40090 830172 AGP3 (arabinogalactan-protein 3) F:unknown;P:multicellular organismal development;C:endomembrane system;P O.I. C.G. H.G.
11.2 99.2 35.5 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
11.1 99.2 206.1 At5g13420 831183 transaldolase, putative F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
174.3	100.0	135.0	At3g12900	820473	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
98.4	99.9	52.6	At4g31940	829324	CYP82C4	member of CYP82C	O.I.	C.G.	H.G.
75.7	99.9	133.4	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
74.7	99.9	146.7	At5g56080	835707	NAS2 (NICOTIANAMINE SYNTHASE 2)	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	O.I.	C.G.	H.G.
73.1	99.9	127.6	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	O.I.	C.G.	H.G.
39.8	99.8	180.7	At3g58550	825024	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
34.6	99.7	186.0	At3g07720	819963	kelch repeat-containing protein	F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA	O.I.	C.G.	H.G.
34.2	99.7	72.1	At1g51420	841567	SPP1 (SUCROSE-PHOSPHATASE 1)	F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO	O.I.	C.G.	H.G.
31.3	99.7	107.5	At2g41660	818764	MIZ1 (mizu-kussei 1)	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	O.I.	C.G.	H.G.
31.0	99.7	185.5	At1g17180	838289	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
30.2	99.7	70.5	At5g02780	831800	In2-1 protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA	O.I.	C.G.	H.G.
28.9	99.7	22.3	At1g05700	837077	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
26.9	99.7	89.6	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
26.3	99.7	45.2	At5g56090	835708	COX15 (cytochrome c oxidase 15)	Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.	O.I.	C.G.	H.G.
26.1	99.7	305.6	At4g12490	826861	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA	O.I.	C.G.	H.G.
25.6	99.7	237.1	At3g14940	820723	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.	O.I.	C.G.	H.G.
25.3	99.6	28.2	At3g02240	820386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.9	99.6	60.1	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.1	99.6	12.8	At4g10510	826643	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM	O.I.	C.G.	H.G.
23.7	99.6	21.2	At3g46270	823772	receptor protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
22.8	99.6	78.9	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
22.4	99.6	67.8	At4g26060	828712	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.7	99.6	29.2	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	C.G.	H.G.
20.9	99.6	133.9	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
20.6	99.6	42.8	At3g14680	820696	CYP72A14	putative cytochrome P450	O.I.	C.G.	H.G.
20.4	99.6	45.3	At3g58810	825050	MTPA2 (METAL TOLERANCE PROTEIN A2)	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.	O.I.	C.G.	H.G.
19.7	99.6	81.4	At2g01150	814644	RHA2B (RING-H2 FINGER PROTEIN 2B)	Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.	O.I.	C.G.	H.G.
19.5	99.6	37.0	At3g48920	824053	AtMYB45 (myb domain protein 45)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
19.4	99.6	98.4	At3g04010	819556	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB	O.I.	C.G.	H.G.
19.4	99.6	38.8	At2g18360	816351	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
19.3	99.6	36.6	At2g47460	819359	MYB12 (MYB DOMAIN PROTEIN 12)	"MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots.	O.I.	C.G.	H.G.
19.1	99.6	129.0	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
18.4	99.5	84.1	At1g23020	838910	FRO3	Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.	O.I.	C.G.	H.G.
18.0	99.5	169.9	At1g78340	844169	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
17.5	99.5	39.5	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.5	99.5	28.8	At5g38820	833873	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
17.4	99.5	148.2	At5g04950	830377	NAS1 (NICOTIANAMINE SYNTHASE 1)	Encodes a nicotianamide synthase.	O.I.	C.G.	H.G.
17.4	99.5	21.9	At5g49350	3771473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
17.3	99.5	103.6	At4g33360	829473	terpene cyclase/mutase-related	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, terpenoid metabolic process, metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPFMAV	O.I.	C.G.	H.G.
17.2	99.5	214.8	At2g21045	816639	-	F:unknown;P:aging;C:unknown;BOPAFM	O.I.	C.G.	H.G.
16.8	99.5	45.7	At1g74760		-	-	O.I.	C.G.	H.G.
16.5	99.5	192.7	At5g41670	834169	6-phosphogluconate dehydrogenase family protein	F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV	O.I.	C.G.	H.G.
16.3	99.5	40.2	At2g26650	817206	AKT1 (ARABIDOPSIS K TRANSPORTER 1)	Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis.	O.I.	C.G.	H.G.
16.0	99.5	29.6	At3g15300	820761	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
15.7	99.5	108.0	At2g02850	814816	ARPN (PLANTACYANIN)	Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.	O.I.	C.G.	H.G.
15.5	99.5	131.2	At3g53480	824516	PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
15.5	99.5	115.7	At1g16210	838189	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
15.5	99.5	24.3	At1g26450	839186	beta-1,3-glucanase-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA	O.I.	C.G.	H.G.
15.4	99.5	56.7	At1g49470	841370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
15.4	99.5	11.1	At3g20960	821646	CYP705A33	member of CYP705A	O.I.	C.G.	H.G.
15.0	99.4	90.2	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.0	99.4	47.4	At2g45430	819151	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;PMFBO	O.I.	C.G.	H.G.
14.6	99.4	91.6	At3g50740	824238	UGT72E1 (UDP-glucosyl transferase 72E1)	UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.	O.I.	C.G.	H.G.
14.6	99.4	46.3	At2g44300	819038	lipid transfer protein-related	F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
14.6	99.4	36.4	At4g32650	829400	ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)	A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.	O.I.	C.G.	H.G.
14.4	99.4	51.7	At3g62810	825456	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
14.2	99.4	27.8	At3g50400	824204	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
13.9	99.4	57.8	At1g20070	838596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
13.9	99.4	26.3	At5g48070	834859	XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)	putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.	O.I.	C.G.	H.G.
13.8	99.4	136.5	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
13.7	99.4	294.4	At4g26970	828805	aconitate hydratase/ copper ion binding	F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP	O.I.	C.G.	H.G.
13.7	99.4	115.0	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
13.7	99.4	79.2	At2g41220	818721	GLU2 (GLUTAMATE SYNTHASE 2)	Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root.	O.I.	C.G.	H.G.
13.6	99.4	105.4	At4g34630	829615	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
13.5	99.4	68.0	At3g12700	820452	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
13.4	99.4	16.5	At5g37550	833733	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.3	99.4	103.2	At2g18370	816352	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
13.2	99.4	119.9	At5g51040	835177	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPM	O.I.	C.G.	H.G.
13.1	99.4	34.3	At5g63000	836420	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
13.1	99.4	27.9	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.0	99.4	187.7	At2g35120	818078	glycine cleavage system H protein, mitochondrial, putative	F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex;BOPMFA	O.I.	C.G.	H.G.
13.0	99.4	105.7	At5g57785	835887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.7	99.3	38.8	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
12.6	99.3	49.7	At3g50260	824188	CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
12.6	99.3	21.2	At3g18170	821344	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
12.5	99.3	104.8	At3g22850	821857	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;BPOM	O.I.	C.G.	H.G.
12.2	99.3	201.0	At1g32450	840139	NRT1.5 (NITRATE TRANSPORTER 1.5)	Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.	O.I.	C.G.	H.G.
12.2	99.3	32.5	At4g13235	826940	EDA21 (embryo sac development arrest 21)	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
12.0	99.3	100.0	At1g74030	843741	enolase, putative	F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP	O.I.	C.G.	H.G.
11.9	99.3	35.4	At4g22530	828348	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
11.9	99.3	35.3	At1g12560	837813	ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.	O.I.	C.G.	H.G.
11.8	99.3	27.9	At4g24140	828514	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV	O.I.	C.G.	H.G.
11.7	99.3	57.1	At3g26690	822281	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	O.I.	C.G.	H.G.
11.6	99.3	111.4	At2g30140	817566	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
11.5	99.3	104.5	At5g45110	834545	NPR3 (NPR1-LIKE PROTEIN 3)	Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays.	O.I.	C.G.	H.G.
11.5	99.3	72.9	At3g15020	820731	malate dehydrogenase (NAD), mitochondrial, putative	F:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFA	O.I.	C.G.	H.G.
11.5	99.3	71.6	At1g02360	837724	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
11.5	99.3	41.1	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
11.5	99.3	30.7	At3g06890	819874	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.5	99.3	16.9	At5g26010	832670	catalytic/ protein serine/threonine phosphatase	F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
11.4	99.3	143.3	At5g04750	830353	F1F0-ATPase inhibitor protein, putative	F:ATPase inhibitor activity;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
11.4	99.3	129.7	At1g17170	838288	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
11.4	99.3	126.0	At5g64250	836546	2-nitropropane dioxygenase family / NPD family	F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
11.4	99.3	16.8	At1g51860	841613	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.4	99.3	7.4	At5g01060	831916	protein kinase family protein	F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
11.3	99.3	77.1	At5g09480	830807	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
11.3	99.3	68.4	At3g54420	824608	ATEP3	encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.	O.I.	C.G.	H.G.
11.2	99.2	49.9	At4g40090	830172	AGP3 (arabinogalactan-protein 3)	F:unknown;P:multicellular organismal development;C:endomembrane system;P	O.I.	C.G.	H.G.
11.2	99.2	35.5	At4g00680	828037	ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
11.1	99.2	206.1	At5g13420	831183	transaldolase, putative	F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF	O.I.	C.G.	H.G.

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GSM ID	GSM184927
Assay name	Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1
GSE experiment	GSE7642: Time course expression analysis of the salt stress response in Arabidopsis roots

Microarray experiments to specifically-expressed genes

GSM ID GSM184927 Assay name Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1 GSE experiment GSE7642: Time course expression analysis of the salt stress response in Arabidopsis roots

GSM ID GSM184927

Assay name Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1

GSE experiment GSE7642: Time course expression analysis of the salt stress response in Arabidopsis roots