Microarray experiments to specifically-expressed genes

GSM ID GSM184923
Assay name Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2
GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2838.4100.0192.0At5g17260831591anac086 (Arabidopsis NAC domain containing protein 86)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
1527.2100.0432.9At3g58350825004meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.C.G.H.G.
1420.2100.0111.3At1g618303767602-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
1344.6100.0168.4At1g65910842903anac028 (Arabidopsis NAC domain containing protein 28)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POMO.I.C.G.H.G.
1327.0100.0202.7At1g13920837952remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
1260.8100.0272.1At3g17690821036ATCNGC19member of Cyclic nucleotide gated channel familyO.I.C.G.H.G.
1105.1100.0289.6At5g25370832609PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.O.I.C.G.H.G.
1078.3100.0393.8At1g77700844106pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOVO.I.C.G.H.G.
1037.8100.0406.2At5g48060834858C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
1026.2100.099.0At3g25855822180unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
964.9100.0313.2At3g15800820823glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POO.I.C.G.H.G.
935.8100.0207.8At5g20870832210glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.C.G.H.G.
920.5100.0353.6At4g09950826585avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
916.1100.0213.5At1g76040843936CPK29member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
907.5100.0140.8At5g04310830310pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.C.G.H.G.
899.5100.0157.0At4g24250828526MLO13 (MILDEW RESISTANCE LOCUS O 13)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
897.4100.0237.9At1g06490837160ATGSL07 (glucan synthase-like 7)encodes a gene similar to callose synthaseO.I.C.G.H.G.
891.6100.0279.2At5g61280836249remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
885.3100.0222.6At3g10680820237heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAO.I.C.G.H.G.
855.3100.0307.0At5g37180833692SUS5Encodes a protein with sucrose synthase activity (SUS5).O.I.C.G.H.G.
843.3100.0332.5At2g14620815950xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
834.2100.074.3At3g21210821674protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POMO.I.C.G.H.G.
831.6100.0231.1At2g41300818729strictosidine synthaseF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOAO.I.C.G.H.G.
818.3100.0168.1At5g43870834409phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:plasma membrane;OPBMFVO.I.C.G.H.G.
797.9100.0195.9At2g15310816020ATARFB1A (ADP-ribosylation factor B1A)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.O.I.C.G.H.G.
791.7100.0214.0At1g61760842473harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
771.5100.0171.3At5g48690834927-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
761.7100.0149.7At3g03200821226anac045 (Arabidopsis NAC domain containing protein 45)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMBO.I.C.G.H.G.
757.7100.0148.4At5g50120835077transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
745.6100.0251.2At5g56720835773malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFAO.I.C.G.H.G.
727.4100.0103.7At2g34530818016unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
714.8100.089.9At3g63050825480unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
714.6100.0286.9At3g01670821096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
703.6100.0145.8At5g67050836840lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMVO.I.C.G.H.G.
701.2100.0189.6At5g38070833787zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.C.G.H.G.
701.0100.0318.8At1g29520839829AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;PO.I.C.G.H.G.
694.6100.0226.5At5g03510831818zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOO.I.C.G.H.G.
686.9100.0229.9At2g39830818570DAR2 (DA1-RELATED PROTEIN 2)F:zinc ion binding;P:unknown;C:chloroplast;MOPFBO.I.C.G.H.G.
683.5100.090.2At2g27300817273NTL8 (NTM1-LIKE 8)F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;PO.I.C.G.H.G.
678.1100.0315.6At4g33490829486aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMFO.I.C.G.H.G.
676.0100.0359.5At3g01680821097unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
664.5100.0258.6At4g12580826871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBO.I.C.G.H.G.
655.4100.0446.3At5g04890830370RTM2 (RESTRICTED TEV MOVEMENT 2)Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).O.I.C.G.H.G.
654.5100.095.3At1g31720840059unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
630.4100.0185.5At2g15680816061calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MFPOBO.I.C.G.H.G.
622.7100.0261.4At3g17380821002meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
615.7100.0197.8At5g03530831810RABC2A (RAB GTPASE HOMOLOG C2A)Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.O.I.C.G.H.G.
615.2100.0100.7At1g23530838962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
611.7100.0230.8At5g07710830664exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOPO.I.C.G.H.G.
599.4100.0139.9At4g18550827587lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMVO.I.C.G.H.G.
578.0100.0136.1At3g22400821808LOX5F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFOO.I.C.G.H.G.
573.4100.0208.8At3g20450821590-F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;PO.I.C.G.H.G.
568.0100.0405.6At2g27140817256heat shock family proteinF:molecular_function unknown;P:response to heat;C:membrane;PBOMO.I.C.G.H.G.
551.7100.0175.8At5g11100830978SYTDF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
533.5100.0333.0At1g05760837084RTM1 (restricted tev movement 1)Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistanceO.I.C.G.H.G.
533.5100.0157.7At1g68230843152reticulon family protein (RTNLB14)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.C.G.H.G.
532.7100.0342.5At1g73370843672SUS6 (SUCROSE SYNTHASE 6)Encodes a protein with sucrose synthase activity (SUS6).O.I.C.G.H.G.
524.0100.0242.3At1g13195837878zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFO.I.C.G.H.G.
515.5100.0308.3At5g18970832015AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;PO.I.C.G.H.G.
500.8100.0425.3At1g14730838038-F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFO.I.C.G.H.G.
500.1100.0396.5At3g20570821604plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMVO.I.C.G.H.G.
493.2100.081.1At5g26190832688DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;POMO.I.C.G.H.G.
484.3100.0172.8At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
473.0100.0195.1At5g62960836416unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
472.0100.076.9At3g14000820614ATBRXL2Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.O.I.C.G.H.G.
461.5100.0153.0At3g18260821354reticulon family protein (RTNLB9)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFO.I.C.G.H.G.
450.8100.0200.6At4g35970829751APX5 (ASCORBATE PEROXIDASE 5)Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.O.I.C.G.H.G.
448.9100.0105.1At3g18670821398ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPBFAVO.I.C.G.H.G.
432.5100.071.0At2g36470818221unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
417.0100.0270.0At4g37445829899-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
414.3100.0236.1At1g63310842637-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
413.7100.0193.5At5g49320834992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
410.7100.0302.8At4g16400827334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
407.7100.0172.1At3g13590820561DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POO.I.C.G.H.G.
407.1100.066.7At5g61260836247chromosome scaffold protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
398.5100.0407.1At3g07420819930NS2Encodes an asparaginyl-tRNA synthetase.O.I.C.G.H.G.
398.2100.084.3At5g38770833868AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
396.2100.078.2At4g16640827365matrix metalloproteinase, putativeF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFAO.I.C.G.H.G.
374.9100.0114.4At1g05610837066APS2 (ADP-glucose pyrophoshorylase small subunit 2)Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.O.I.C.G.H.G.
371.9100.0181.6At5g51260835200acid phosphatase, putativeF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOMO.I.C.G.H.G.
371.9100.0107.3At5g43380834356TOPP6encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.O.I.C.G.H.G.
367.5100.059.5At1g54330841874ANAC020 (Arabidopsis NAC domain containing protein 20)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
341.7100.071.6At5g57190835825PSD2 (phosphatidylserine decarboxylase 2)Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.O.I.C.G.H.G.
340.6100.0139.2At1g02950838240ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
337.4100.0196.1At1g05770837085jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
332.8100.0175.0At1g60030842297xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.C.G.H.G.
328.6100.063.0At3g05620819728pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
317.3100.0191.8At4g21310827879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
316.5100.052.8At3g28600822490ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
315.7100.051.9At1g11915837741unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
310.5100.049.8At1g34480840350DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOO.I.C.G.H.G.
304.0100.0164.6At2g41200818719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
292.9100.0235.7At2g466303768746unknown proteinF:unknown;P:unknown;C:chloroplastO.I.C.G.H.G.
292.6100.0217.8At5g65280836653GCL1 (GCR2-LIKE 1)Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.O.I.C.G.H.G.
287.7100.034.6At4g214203770205transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
284.5100.095.1At5g14510831302armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
276.1100.0101.0At2g31130817669unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFO.I.C.G.H.G.
275.3100.080.5At5g25490832624zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOFO.I.C.G.H.G.
266.1100.0174.8At5g02140831881thaumatin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOVO.I.C.G.H.G.
262.5100.0122.2At5g58690835983phosphoinositide-specific phospholipase C family proteinF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.H.G.



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