CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184923

Assay name Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2838.4 100.0 192.0 At5g17260 831591 anac086 (Arabidopsis NAC domain containing protein 86) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
1527.2 100.0 432.9 At3g58350 825004 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
1420.2 100.0 111.3 At1g61830 3767602 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1344.6 100.0 168.4 At1g65910 842903 anac028 (Arabidopsis NAC domain containing protein 28) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
1327.0 100.0 202.7 At1g13920 837952 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
1260.8 100.0 272.1 At3g17690 821036 ATCNGC19 member of Cyclic nucleotide gated channel family O.I. C.G. H.G.
1105.1 100.0 289.6 At5g25370 832609 PLDALPHA3 (PHOSPHLIPASE D ALPHA 3) member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response. O.I. C.G. H.G.
1078.3 100.0 393.8 At1g77700 844106 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOV O.I. C.G. H.G.
1037.8 100.0 406.2 At5g48060 834858 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
1026.2 100.0 99.0 At3g25855 822180 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
964.9 100.0 313.2 At3g15800 820823 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PO O.I. C.G. H.G.
935.8 100.0 207.8 At5g20870 832210 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB O.I. C.G. H.G.
920.5 100.0 353.6 At4g09950 826585 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
916.1 100.0 213.5 At1g76040 843936 CPK29 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
907.5 100.0 140.8 At5g04310 830310 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
899.5 100.0 157.0 At4g24250 828526 MLO13 (MILDEW RESISTANCE LOCUS O 13) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
897.4 100.0 237.9 At1g06490 837160 ATGSL07 (glucan synthase-like 7) encodes a gene similar to callose synthase O.I. C.G. H.G.
891.6 100.0 279.2 At5g61280 836249 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
885.3 100.0 222.6 At3g10680 820237 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA O.I. C.G. H.G.
855.3 100.0 307.0 At5g37180 833692 SUS5 Encodes a protein with sucrose synthase activity (SUS5). O.I. C.G. H.G.
843.3 100.0 332.5 At2g14620 815950 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
834.2 100.0 74.3 At3g21210 821674 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POM O.I. C.G. H.G.
831.6 100.0 231.1 At2g41300 818729 strictosidine synthase F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA O.I. C.G. H.G.
818.3 100.0 168.1 At5g43870 834409 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:plasma membrane;OPBMFV O.I. C.G. H.G.
797.9 100.0 195.9 At2g15310 816020 ATARFB1A (ADP-ribosylation factor B1A) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. O.I. C.G. H.G.
791.7 100.0 214.0 At1g61760 842473 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
771.5 100.0 171.3 At5g48690 834927 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
761.7 100.0 149.7 At3g03200 821226 anac045 (Arabidopsis NAC domain containing protein 45) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB O.I. C.G. H.G.
757.7 100.0 148.4 At5g50120 835077 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA O.I. C.G. H.G.
745.6 100.0 251.2 At5g56720 835773 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA O.I. C.G. H.G.
727.4 100.0 103.7 At2g34530 818016 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
714.8 100.0 89.9 At3g63050 825480 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
714.6 100.0 286.9 At3g01670 821096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
703.6 100.0 145.8 At5g67050 836840 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV O.I. C.G. H.G.
701.2 100.0 189.6 At5g38070 833787 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
701.0 100.0 318.8 At1g29520 839829 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
694.6 100.0 226.5 At5g03510 831818 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO O.I. C.G. H.G.
686.9 100.0 229.9 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB O.I. C.G. H.G.
683.5 100.0 90.2 At2g27300 817273 NTL8 (NTM1-LIKE 8) F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P O.I. C.G. H.G.
678.1 100.0 315.6 At4g33490 829486 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMF O.I. C.G. H.G.
676.0 100.0 359.5 At3g01680 821097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
664.5 100.0 258.6 At4g12580 826871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
655.4 100.0 446.3 At5g04890 830370 RTM2 (RESTRICTED TEV MOVEMENT 2) Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs). O.I. C.G. H.G.
654.5 100.0 95.3 At1g31720 840059 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
630.4 100.0 185.5 At2g15680 816061 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
622.7 100.0 261.4 At3g17380 821002 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
615.7 100.0 197.8 At5g03530 831810 RABC2A (RAB GTPASE HOMOLOG C2A) Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes. O.I. C.G. H.G.
615.2 100.0 100.7 At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
611.7 100.0 230.8 At5g07710 830664 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP O.I. C.G. H.G.
599.4 100.0 139.9 At4g18550 827587 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMV O.I. C.G. H.G.
578.0 100.0 136.1 At3g22400 821808 LOX5 F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO O.I. C.G. H.G.
573.4 100.0 208.8 At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P O.I. C.G. H.G.
568.0 100.0 405.6 At2g27140 817256 heat shock family protein F:molecular_function unknown;P:response to heat;C:membrane;PBOM O.I. C.G. H.G.
551.7 100.0 175.8 At5g11100 830978 SYTD F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
533.5 100.0 333.0 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance O.I. C.G. H.G.
533.5 100.0 157.7 At1g68230 843152 reticulon family protein (RTNLB14) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
532.7 100.0 342.5 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). O.I. C.G. H.G.
524.0 100.0 242.3 At1g13195 837878 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF O.I. C.G. H.G.
515.5 100.0 308.3 At5g18970 832015 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
500.8 100.0 425.3 At1g14730 838038 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF O.I. C.G. H.G.
500.1 100.0 396.5 At3g20570 821604 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV O.I. C.G. H.G.
493.2 100.0 81.1 At5g26190 832688 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM O.I. C.G. H.G.
484.3 100.0 172.8 At2g36650 818237 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
473.0 100.0 195.1 At5g62960 836416 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
472.0 100.0 76.9 At3g14000 820614 ATBRXL2 Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. O.I. C.G. H.G.
461.5 100.0 153.0 At3g18260 821354 reticulon family protein (RTNLB9) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF O.I. C.G. H.G.
450.8 100.0 200.6 At4g35970 829751 APX5 (ASCORBATE PEROXIDASE 5) Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. O.I. C.G. H.G.
448.9 100.0 105.1 At3g18670 821398 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFAV O.I. C.G. H.G.
432.5 100.0 71.0 At2g36470 818221 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
417.0 100.0 270.0 At4g37445 829899 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
414.3 100.0 236.1 At1g63310 842637 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
413.7 100.0 193.5 At5g49320 834992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
410.7 100.0 302.8 At4g16400 827334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
407.7 100.0 172.1 At3g13590 820561 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO O.I. C.G. H.G.
407.1 100.0 66.7 At5g61260 836247 chromosome scaffold protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
398.5 100.0 407.1 At3g07420 819930 NS2 Encodes an asparaginyl-tRNA synthetase. O.I. C.G. H.G.
398.2 100.0 84.3 At5g38770 833868 AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
396.2 100.0 78.2 At4g16640 827365 matrix metalloproteinase, putative F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA O.I. C.G. H.G.
374.9 100.0 114.4 At1g05610 837066 APS2 (ADP-glucose pyrophoshorylase small subunit 2) Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested. O.I. C.G. H.G.
371.9 100.0 181.6 At5g51260 835200 acid phosphatase, putative F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOM O.I. C.G. H.G.
371.9 100.0 107.3 At5g43380 834356 TOPP6 encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers. O.I. C.G. H.G.
367.5 100.0 59.5 At1g54330 841874 ANAC020 (Arabidopsis NAC domain containing protein 20) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
341.7 100.0 71.6 At5g57190 835825 PSD2 (phosphatidylserine decarboxylase 2) Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast. O.I. C.G. H.G.
340.6 100.0 139.2 At1g02950 838240 ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
337.4 100.0 196.1 At1g05770 837085 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
332.8 100.0 175.0 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
328.6 100.0 63.0 At3g05620 819728 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
317.3 100.0 191.8 At4g21310 827879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
316.5 100.0 52.8 At3g28600 822490 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
315.7 100.0 51.9 At1g11915 837741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
310.5 100.0 49.8 At1g34480 840350 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO O.I. C.G. H.G.
304.0 100.0 164.6 At2g41200 818719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
292.9 100.0 235.7 At2g46630 3768746 unknown protein F:unknown;P:unknown;C:chloroplast O.I. C.G. H.G.
292.6 100.0 217.8 At5g65280 836653 GCL1 (GCR2-LIKE 1) Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. O.I. C.G. H.G.
287.7 100.0 34.6 At4g21420 3770205 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
284.5 100.0 95.1 At5g14510 831302 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
276.1 100.0 101.0 At2g31130 817669 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBF O.I. C.G. H.G.
275.3 100.0 80.5 At5g25490 832624 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOF O.I. C.G. H.G.
266.1 100.0 174.8 At5g02140 831881 thaumatin-like protein, putative F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV O.I. C.G. H.G.
262.5 100.0 122.2 At5g58690 835983 phosphoinositide-specific phospholipase C family protein F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2838.4	100.0	192.0	At5g17260	831591	anac086 (Arabidopsis NAC domain containing protein 86)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
1527.2	100.0	432.9	At3g58350	825004	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
1420.2	100.0	111.3	At1g61830	3767602	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1344.6	100.0	168.4	At1g65910	842903	anac028 (Arabidopsis NAC domain containing protein 28)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
1327.0	100.0	202.7	At1g13920	837952	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
1260.8	100.0	272.1	At3g17690	821036	ATCNGC19	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.
1105.1	100.0	289.6	At5g25370	832609	PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)	member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	O.I.	C.G.	H.G.
1078.3	100.0	393.8	At1g77700	844106	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOV	O.I.	C.G.	H.G.
1037.8	100.0	406.2	At5g48060	834858	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
1026.2	100.0	99.0	At3g25855	822180	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
964.9	100.0	313.2	At3g15800	820823	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PO	O.I.	C.G.	H.G.
935.8	100.0	207.8	At5g20870	832210	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB	O.I.	C.G.	H.G.
920.5	100.0	353.6	At4g09950	826585	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
916.1	100.0	213.5	At1g76040	843936	CPK29	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
907.5	100.0	140.8	At5g04310	830310	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
899.5	100.0	157.0	At4g24250	828526	MLO13 (MILDEW RESISTANCE LOCUS O 13)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
897.4	100.0	237.9	At1g06490	837160	ATGSL07 (glucan synthase-like 7)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
891.6	100.0	279.2	At5g61280	836249	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
885.3	100.0	222.6	At3g10680	820237	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA	O.I.	C.G.	H.G.
855.3	100.0	307.0	At5g37180	833692	SUS5	Encodes a protein with sucrose synthase activity (SUS5).	O.I.	C.G.	H.G.
843.3	100.0	332.5	At2g14620	815950	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
834.2	100.0	74.3	At3g21210	821674	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:intracellular signaling cascade, response to stress;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
831.6	100.0	231.1	At2g41300	818729	strictosidine synthase	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA	O.I.	C.G.	H.G.
818.3	100.0	168.1	At5g43870	834409	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:plasma membrane;OPBMFV	O.I.	C.G.	H.G.
797.9	100.0	195.9	At2g15310	816020	ATARFB1A (ADP-ribosylation factor B1A)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
791.7	100.0	214.0	At1g61760	842473	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
771.5	100.0	171.3	At5g48690	834927	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
761.7	100.0	149.7	At3g03200	821226	anac045 (Arabidopsis NAC domain containing protein 45)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB	O.I.	C.G.	H.G.
757.7	100.0	148.4	At5g50120	835077	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA	O.I.	C.G.	H.G.
745.6	100.0	251.2	At5g56720	835773	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA	O.I.	C.G.	H.G.
727.4	100.0	103.7	At2g34530	818016	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
714.8	100.0	89.9	At3g63050	825480	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
714.6	100.0	286.9	At3g01670	821096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
703.6	100.0	145.8	At5g67050	836840	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV	O.I.	C.G.	H.G.
701.2	100.0	189.6	At5g38070	833787	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
701.0	100.0	318.8	At1g29520	839829	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
694.6	100.0	226.5	At5g03510	831818	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO	O.I.	C.G.	H.G.
686.9	100.0	229.9	At2g39830	818570	DAR2 (DA1-RELATED PROTEIN 2)	F:zinc ion binding;P:unknown;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
683.5	100.0	90.2	At2g27300	817273	NTL8 (NTM1-LIKE 8)	F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P	O.I.	C.G.	H.G.
678.1	100.0	315.6	At4g33490	829486	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMF	O.I.	C.G.	H.G.
676.0	100.0	359.5	At3g01680	821097	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
664.5	100.0	258.6	At4g12580	826871	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
655.4	100.0	446.3	At5g04890	830370	RTM2 (RESTRICTED TEV MOVEMENT 2)	Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).	O.I.	C.G.	H.G.
654.5	100.0	95.3	At1g31720	840059	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
630.4	100.0	185.5	At2g15680	816061	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
622.7	100.0	261.4	At3g17380	821002	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
615.7	100.0	197.8	At5g03530	831810	RABC2A (RAB GTPASE HOMOLOG C2A)	Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.	O.I.	C.G.	H.G.
615.2	100.0	100.7	At1g23530	838962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
611.7	100.0	230.8	At5g07710	830664	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP	O.I.	C.G.	H.G.
599.4	100.0	139.9	At4g18550	827587	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMV	O.I.	C.G.	H.G.
578.0	100.0	136.1	At3g22400	821808	LOX5	F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO	O.I.	C.G.	H.G.
573.4	100.0	208.8	At3g20450	821590	-	F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P	O.I.	C.G.	H.G.
568.0	100.0	405.6	At2g27140	817256	heat shock family protein	F:molecular_function unknown;P:response to heat;C:membrane;PBOM	O.I.	C.G.	H.G.
551.7	100.0	175.8	At5g11100	830978	SYTD	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
533.5	100.0	333.0	At1g05760	837084	RTM1 (restricted tev movement 1)	Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance	O.I.	C.G.	H.G.
533.5	100.0	157.7	At1g68230	843152	reticulon family protein (RTNLB14)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
532.7	100.0	342.5	At1g73370	843672	SUS6 (SUCROSE SYNTHASE 6)	Encodes a protein with sucrose synthase activity (SUS6).	O.I.	C.G.	H.G.
524.0	100.0	242.3	At1g13195	837878	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF	O.I.	C.G.	H.G.
515.5	100.0	308.3	At5g18970	832015	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
500.8	100.0	425.3	At1g14730	838038	-	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF	O.I.	C.G.	H.G.
500.1	100.0	396.5	At3g20570	821604	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV	O.I.	C.G.	H.G.
493.2	100.0	81.1	At5g26190	832688	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM	O.I.	C.G.	H.G.
484.3	100.0	172.8	At2g36650	818237	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
473.0	100.0	195.1	At5g62960	836416	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
472.0	100.0	76.9	At3g14000	820614	ATBRXL2	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	O.I.	C.G.	H.G.
461.5	100.0	153.0	At3g18260	821354	reticulon family protein (RTNLB9)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF	O.I.	C.G.	H.G.
450.8	100.0	200.6	At4g35970	829751	APX5 (ASCORBATE PEROXIDASE 5)	Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	O.I.	C.G.	H.G.
448.9	100.0	105.1	At3g18670	821398	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOPBFAV	O.I.	C.G.	H.G.
432.5	100.0	71.0	At2g36470	818221	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
417.0	100.0	270.0	At4g37445	829899	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
414.3	100.0	236.1	At1g63310	842637	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
413.7	100.0	193.5	At5g49320	834992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
410.7	100.0	302.8	At4g16400	827334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
407.7	100.0	172.1	At3g13590	820561	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO	O.I.	C.G.	H.G.
407.1	100.0	66.7	At5g61260	836247	chromosome scaffold protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
398.5	100.0	407.1	At3g07420	819930	NS2	Encodes an asparaginyl-tRNA synthetase.	O.I.	C.G.	H.G.
398.2	100.0	84.3	At5g38770	833868	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
396.2	100.0	78.2	At4g16640	827365	matrix metalloproteinase, putative	F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA	O.I.	C.G.	H.G.
374.9	100.0	114.4	At1g05610	837066	APS2 (ADP-glucose pyrophoshorylase small subunit 2)	Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.	O.I.	C.G.	H.G.
371.9	100.0	181.6	At5g51260	835200	acid phosphatase, putative	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOM	O.I.	C.G.	H.G.
371.9	100.0	107.3	At5g43380	834356	TOPP6	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	O.I.	C.G.	H.G.
367.5	100.0	59.5	At1g54330	841874	ANAC020 (Arabidopsis NAC domain containing protein 20)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
341.7	100.0	71.6	At5g57190	835825	PSD2 (phosphatidylserine decarboxylase 2)	Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.	O.I.	C.G.	H.G.
340.6	100.0	139.2	At1g02950	838240	ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
337.4	100.0	196.1	At1g05770	837085	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
332.8	100.0	175.0	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
328.6	100.0	63.0	At3g05620	819728	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
317.3	100.0	191.8	At4g21310	827879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
316.5	100.0	52.8	At3g28600	822490	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
315.7	100.0	51.9	At1g11915	837741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
310.5	100.0	49.8	At1g34480	840350	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO	O.I.	C.G.	H.G.
304.0	100.0	164.6	At2g41200	818719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
292.9	100.0	235.7	At2g46630	3768746	unknown protein	F:unknown;P:unknown;C:chloroplast	O.I.	C.G.	H.G.
292.6	100.0	217.8	At5g65280	836653	GCL1 (GCR2-LIKE 1)	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	O.I.	C.G.	H.G.
287.7	100.0	34.6	At4g21420	3770205	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
284.5	100.0	95.1	At5g14510	831302	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
276.1	100.0	101.0	At2g31130	817669	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBF	O.I.	C.G.	H.G.
275.3	100.0	80.5	At5g25490	832624	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOF	O.I.	C.G.	H.G.
266.1	100.0	174.8	At5g02140	831881	thaumatin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV	O.I.	C.G.	H.G.
262.5	100.0	122.2	At5g58690	835983	phosphoinositide-specific phospholipase C family protein	F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.

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GSM ID	GSM184923
Assay name	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2
GSE experiment	GSE7641: Expression analysis of root cell-types after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184923 Assay name Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

GSM ID GSM184923

Assay name Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt