CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184922

Assay name Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1445.1 100.0 291.3 At3g17690 821036 ATCNGC19 member of Cyclic nucleotide gated channel family O.I. C.G. H.G.
1008.3 100.0 94.2 At3g28600 822490 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
873.0 100.0 164.3 At5g43380 834356 TOPP6 encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers. O.I. C.G. H.G.
796.6 100.0 190.3 At4g36710 829824 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO O.I. C.G. H.G.
560.9 100.0 186.0 At2g36650 818237 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
534.3 100.0 79.8 At2g27300 817273 NTL8 (NTM1-LIKE 8) F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P O.I. C.G. H.G.
514.1 100.0 395.2 At5g04890 830370 RTM2 (RESTRICTED TEV MOVEMENT 2) Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs). O.I. C.G. H.G.
508.9 100.0 460.0 At3g07420 819930 NS2 Encodes an asparaginyl-tRNA synthetase. O.I. C.G. H.G.
483.9 100.0 243.7 At3g58350 825004 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
481.3 100.0 63.0 At3g51680 824331 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
476.1 100.0 301.7 At3g01680 821097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
469.8 100.0 81.0 At2g30400 817591 OFP2 (OVATE FAMILY PROTEIN 2) F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB O.I. C.G. H.G.
440.3 100.0 123.3 At5g43870 834409 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:plasma membrane;OPBMFV O.I. C.G. H.G.
429.8 100.0 56.6 At3g59740 825143 receptor lectin kinase 3 (lecRK3) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
425.7 100.0 165.3 At2g41300 818729 strictosidine synthase F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA O.I. C.G. H.G.
416.2 100.0 75.8 At1g64700 842778 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
410.2 100.0 68.1 At3g63050 825480 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
410.0 100.0 212.6 At5g37180 833692 SUS5 Encodes a protein with sucrose synthase activity (SUS5). O.I. C.G. H.G.
329.9 100.0 174.2 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
324.5 100.0 168.4 At5g61280 836249 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
322.5 100.0 150.2 At5g64870 836610 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA O.I. C.G. H.G.
316.1 100.0 178.4 At4g12580 826871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
315.0 100.0 132.9 At5g11100 830978 SYTD F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
303.8 100.0 107.4 At1g26450 839186 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA O.I. C.G. H.G.
293.9 100.0 50.0 At4g36740 829827 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
288.1 100.0 117.7 At2g15310 816020 ATARFB1A (ADP-ribosylation factor B1A) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. O.I. C.G. H.G.
284.0 100.0 126.1 At3g10680 820237 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA O.I. C.G. H.G.
282.2 100.0 202.3 At1g29520 839829 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
273.8 100.0 93.7 At3g22400 821808 LOX5 F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO O.I. C.G. H.G.
272.8 100.0 71.8 At5g01380 831895 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA O.I. C.G. H.G.
270.2 100.0 95.1 At4g12410 826850 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
270.0 100.0 48.5 At1g61830 3767602 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
267.0 100.0 208.1 At5g65280 836653 GCL1 (GCR2-LIKE 1) Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. O.I. C.G. H.G.
261.2 100.0 74.8 At4g17220 827434 ATMAP70-5 (microtubule-associated proteins 70-5) Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues. O.I. C.G. H.G.
255.1 100.0 120.5 At5g58690 835983 phosphoinositide-specific phospholipase C family protein F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
248.8 100.0 82.6 At1g62840 842584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
246.3 100.0 60.8 At5g57190 835825 PSD2 (phosphatidylserine decarboxylase 2) Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast. O.I. C.G. H.G.
244.0 100.0 110.2 At1g76040 843936 CPK29 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
243.3 100.0 167.4 At3g01670 821096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
242.1 100.0 140.1 At1g58340 842203 ZF14 F:drug transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
241.3 100.0 230.5 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). O.I. C.G. H.G.
236.5 100.0 136.7 At5g67460 836882 glycosyl hydrolase family protein 17 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM O.I. C.G. H.G.
225.7 100.0 38.8 At5g55090 835600 MAPKKK15 member of MEKK subfamily O.I. C.G. H.G.
221.5 100.0 101.6 At1g68230 843152 reticulon family protein (RTNLB14) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
213.4 100.0 67.1 At1g65910 842903 anac028 (Arabidopsis NAC domain containing protein 28) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
212.6 100.0 195.3 At5g59490 836068 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
211.8 100.0 154.0 At1g13195 837878 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF O.I. C.G. H.G.
211.7 100.0 30.8 At1g75290 843866 oxidoreductase, acting on NADH or NADPH encodes a protein whose sequence is similar to an isoflavone reductase O.I. C.G. H.G.
209.1 100.0 75.9 At1g70130 843349 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
205.9 100.0 82.3 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
204.4 100.0 194.1 At5g18970 832015 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
202.3 100.0 77.1 At3g03200 821226 anac045 (Arabidopsis NAC domain containing protein 45) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB O.I. C.G. H.G.
192.6 100.0 75.1 At1g70750 843412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFPBVA O.I. C.G. H.G.
190.9 100.0 120.4 At5g25370 832609 PLDALPHA3 (PHOSPHLIPASE D ALPHA 3) member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response. O.I. C.G. H.G.
187.7 100.0 55.6 At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
185.0 100.0 42.0 At3g25855 822180 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
183.2 100.0 72.8 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
182.3 100.0 170.3 At5g48060 834858 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
180.9 100.0 52.2 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
180.6 100.0 109.2 At5g61890 836310 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
180.0 100.0 140.5 At3g17380 821002 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
180.0 100.0 106.5 At1g06490 837160 ATGSL07 (glucan synthase-like 7) encodes a gene similar to callose synthase O.I. C.G. H.G.
178.4 100.0 253.8 At1g14730 838038 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF O.I. C.G. H.G.
173.5 100.0 50.7 At2g34530 818016 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
168.5 100.0 70.0 At5g50120 835077 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA O.I. C.G. H.G.
166.6 100.0 186.0 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance O.I. C.G. H.G.
163.6 99.9 70.3 At5g67050 836840 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV O.I. C.G. H.G.
161.4 99.9 219.7 At4g35985 829753 senescence/dehydration-associated protein-related F:unknown;P:unknown;C:chloroplast;MPFO O.I. C.G. H.G.
160.6 99.9 116.6 At5g56720 835773 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA O.I. C.G. H.G.
158.2 99.9 53.5 At5g06850 830576 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF O.I. C.G. H.G.
155.6 99.9 64.6 At4g25380 828641 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
154.0 99.9 65.0 At4g24250 828526 MLO13 (MILDEW RESISTANCE LOCUS O 13) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
152.3 99.9 106.1 At5g03510 831818 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO O.I. C.G. H.G.
152.0 99.9 117.2 At5g49320 834992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
150.6 99.9 87.4 At3g18260 821354 reticulon family protein (RTNLB9) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF O.I. C.G. H.G.
146.4 99.9 67.3 At1g13920 837952 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
141.7 99.9 91.9 At1g05100 839324 MAPKKK18 member of MEKK subfamily O.I. C.G. H.G.
140.9 99.9 138.4 At4g09950 826585 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
140.6 99.9 80.1 At2g27740 817320 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAV O.I. C.G. H.G.
138.5 99.9 43.8 At1g31720 840059 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
138.4 99.9 42.4 At5g17260 831591 anac086 (Arabidopsis NAC domain containing protein 86) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
135.9 99.9 94.5 At3g15650 820808 phospholipase/carboxylesterase family protein F:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.
132.8 99.9 76.7 At1g79430 844281 APL (ALTERED PHLOEM DEVELOPMENT) Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches. O.I. C.G. H.G.
131.8 99.9 247.8 At5g19110 832031 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
128.6 99.9 147.9 At3g03610 821208 phagocytosis and cell motility protein ELMO1-related F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF O.I. C.G. H.G.
127.2 99.9 105.2 At5g07710 830664 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP O.I. C.G. H.G.
126.3 99.9 98.0 At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P O.I. C.G. H.G.
125.3 99.9 69.0 At5g48690 834927 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
125.0 99.9 100.0 At5g04080 830287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
123.5 99.9 23.6 At1g75720 843906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
123.4 99.9 85.5 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA O.I. C.G. H.G.
123.1 99.9 55.0 At3g18670 821398 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFAV O.I. C.G. H.G.
122.7 99.9 83.6 At1g02950 838240 ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
122.5 99.9 116.3 At3g55950 824761 CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
122.4 99.9 97.1 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB O.I. C.G. H.G.
122.0 99.9 84.0 At1g74510 843792 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
121.5 99.9 31.3 At1g32970 840191 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFM O.I. C.G. H.G.
121.1 99.9 197.1 At1g20823 838674 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV O.I. C.G. H.G.
121.1 99.9 134.9 At5g50720 835144 ATHVA22E Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. O.I. C.G. H.G.
119.4 99.9 124.2 At5g17850 831653 cation exchanger, putative (CAX8) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1445.1	100.0	291.3	At3g17690	821036	ATCNGC19	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.
1008.3	100.0	94.2	At3g28600	822490	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
873.0	100.0	164.3	At5g43380	834356	TOPP6	encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.	O.I.	C.G.	H.G.
796.6	100.0	190.3	At4g36710	829824	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
560.9	100.0	186.0	At2g36650	818237	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
534.3	100.0	79.8	At2g27300	817273	NTL8 (NTM1-LIKE 8)	F:transcription factor activity;P:multicellular organismal development, response to salt stress, seed germination;C:plasma membrane;P	O.I.	C.G.	H.G.
514.1	100.0	395.2	At5g04890	830370	RTM2 (RESTRICTED TEV MOVEMENT 2)	Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).	O.I.	C.G.	H.G.
508.9	100.0	460.0	At3g07420	819930	NS2	Encodes an asparaginyl-tRNA synthetase.	O.I.	C.G.	H.G.
483.9	100.0	243.7	At3g58350	825004	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
481.3	100.0	63.0	At3g51680	824331	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
476.1	100.0	301.7	At3g01680	821097	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
469.8	100.0	81.0	At2g30400	817591	OFP2 (OVATE FAMILY PROTEIN 2)	F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB	O.I.	C.G.	H.G.
440.3	100.0	123.3	At5g43870	834409	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:plasma membrane;OPBMFV	O.I.	C.G.	H.G.
429.8	100.0	56.6	At3g59740	825143	receptor lectin kinase 3 (lecRK3)	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
425.7	100.0	165.3	At2g41300	818729	strictosidine synthase	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA	O.I.	C.G.	H.G.
416.2	100.0	75.8	At1g64700	842778	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
410.2	100.0	68.1	At3g63050	825480	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
410.0	100.0	212.6	At5g37180	833692	SUS5	Encodes a protein with sucrose synthase activity (SUS5).	O.I.	C.G.	H.G.
329.9	100.0	174.2	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
324.5	100.0	168.4	At5g61280	836249	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
322.5	100.0	150.2	At5g64870	836610	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA	O.I.	C.G.	H.G.
316.1	100.0	178.4	At4g12580	826871	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
315.0	100.0	132.9	At5g11100	830978	SYTD	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
303.8	100.0	107.4	At1g26450	839186	beta-1,3-glucanase-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA	O.I.	C.G.	H.G.
293.9	100.0	50.0	At4g36740	829827	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
288.1	100.0	117.7	At2g15310	816020	ATARFB1A (ADP-ribosylation factor B1A)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
284.0	100.0	126.1	At3g10680	820237	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA	O.I.	C.G.	H.G.
282.2	100.0	202.3	At1g29520	839829	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
273.8	100.0	93.7	At3g22400	821808	LOX5	F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO	O.I.	C.G.	H.G.
272.8	100.0	71.8	At5g01380	831895	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
270.2	100.0	95.1	At4g12410	826850	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
270.0	100.0	48.5	At1g61830	3767602	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
267.0	100.0	208.1	At5g65280	836653	GCL1 (GCR2-LIKE 1)	Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.	O.I.	C.G.	H.G.
261.2	100.0	74.8	At4g17220	827434	ATMAP70-5 (microtubule-associated proteins 70-5)	Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues.	O.I.	C.G.	H.G.
255.1	100.0	120.5	At5g58690	835983	phosphoinositide-specific phospholipase C family protein	F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
248.8	100.0	82.6	At1g62840	842584	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
246.3	100.0	60.8	At5g57190	835825	PSD2 (phosphatidylserine decarboxylase 2)	Encodes the minor form of the two non-mitochondrail phosphatidylserine decarboxylase. The gene expression level is very low. Located at the tonoplast.	O.I.	C.G.	H.G.
244.0	100.0	110.2	At1g76040	843936	CPK29	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
243.3	100.0	167.4	At3g01670	821096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
242.1	100.0	140.1	At1g58340	842203	ZF14	F:drug transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
241.3	100.0	230.5	At1g73370	843672	SUS6 (SUCROSE SYNTHASE 6)	Encodes a protein with sucrose synthase activity (SUS6).	O.I.	C.G.	H.G.
236.5	100.0	136.7	At5g67460	836882	glycosyl hydrolase family protein 17	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM	O.I.	C.G.	H.G.
225.7	100.0	38.8	At5g55090	835600	MAPKKK15	member of MEKK subfamily	O.I.	C.G.	H.G.
221.5	100.0	101.6	At1g68230	843152	reticulon family protein (RTNLB14)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
213.4	100.0	67.1	At1g65910	842903	anac028 (Arabidopsis NAC domain containing protein 28)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
212.6	100.0	195.3	At5g59490	836068	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
211.8	100.0	154.0	At1g13195	837878	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF	O.I.	C.G.	H.G.
211.7	100.0	30.8	At1g75290	843866	oxidoreductase, acting on NADH or NADPH	encodes a protein whose sequence is similar to an isoflavone reductase	O.I.	C.G.	H.G.
209.1	100.0	75.9	At1g70130	843349	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
205.9	100.0	82.3	At2g26380	817178	disease resistance protein-related / LRR protein-related	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
204.4	100.0	194.1	At5g18970	832015	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
202.3	100.0	77.1	At3g03200	821226	anac045 (Arabidopsis NAC domain containing protein 45)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB	O.I.	C.G.	H.G.
192.6	100.0	75.1	At1g70750	843412	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFPBVA	O.I.	C.G.	H.G.
190.9	100.0	120.4	At5g25370	832609	PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)	member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	O.I.	C.G.	H.G.
187.7	100.0	55.6	At1g23530	838962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
185.0	100.0	42.0	At3g25855	822180	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
183.2	100.0	72.8	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
182.3	100.0	170.3	At5g48060	834858	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
180.9	100.0	52.2	At5g46590	834702	anac096 (Arabidopsis NAC domain containing protein 96)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
180.6	100.0	109.2	At5g61890	836310	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
180.0	100.0	140.5	At3g17380	821002	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
180.0	100.0	106.5	At1g06490	837160	ATGSL07 (glucan synthase-like 7)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
178.4	100.0	253.8	At1g14730	838038	-	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF	O.I.	C.G.	H.G.
173.5	100.0	50.7	At2g34530	818016	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
168.5	100.0	70.0	At5g50120	835077	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPA	O.I.	C.G.	H.G.
166.6	100.0	186.0	At1g05760	837084	RTM1 (restricted tev movement 1)	Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance	O.I.	C.G.	H.G.
163.6	99.9	70.3	At5g67050	836840	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV	O.I.	C.G.	H.G.
161.4	99.9	219.7	At4g35985	829753	senescence/dehydration-associated protein-related	F:unknown;P:unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
160.6	99.9	116.6	At5g56720	835773	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA	O.I.	C.G.	H.G.
158.2	99.9	53.5	At5g06850	830576	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
155.6	99.9	64.6	At4g25380	828641	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
154.0	99.9	65.0	At4g24250	828526	MLO13 (MILDEW RESISTANCE LOCUS O 13)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
152.3	99.9	106.1	At5g03510	831818	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO	O.I.	C.G.	H.G.
152.0	99.9	117.2	At5g49320	834992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
150.6	99.9	87.4	At3g18260	821354	reticulon family protein (RTNLB9)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF	O.I.	C.G.	H.G.
146.4	99.9	67.3	At1g13920	837952	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
141.7	99.9	91.9	At1g05100	839324	MAPKKK18	member of MEKK subfamily	O.I.	C.G.	H.G.
140.9	99.9	138.4	At4g09950	826585	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
140.6	99.9	80.1	At2g27740	817320	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAV	O.I.	C.G.	H.G.
138.5	99.9	43.8	At1g31720	840059	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
138.4	99.9	42.4	At5g17260	831591	anac086 (Arabidopsis NAC domain containing protein 86)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
135.9	99.9	94.5	At3g15650	820808	phospholipase/carboxylesterase family protein	F:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
132.8	99.9	76.7	At1g79430	844281	APL (ALTERED PHLOEM DEVELOPMENT)	Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.	O.I.	C.G.	H.G.
131.8	99.9	247.8	At5g19110	832031	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
128.6	99.9	147.9	At3g03610	821208	phagocytosis and cell motility protein ELMO1-related	F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF	O.I.	C.G.	H.G.
127.2	99.9	105.2	At5g07710	830664	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP	O.I.	C.G.	H.G.
126.3	99.9	98.0	At3g20450	821590	-	F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P	O.I.	C.G.	H.G.
125.3	99.9	69.0	At5g48690	834927	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
125.0	99.9	100.0	At5g04080	830287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
123.5	99.9	23.6	At1g75720	843906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
123.4	99.9	85.5	At5g17980	831665	C2 domain-containing protein	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA	O.I.	C.G.	H.G.
123.1	99.9	55.0	At3g18670	821398	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOPBFAV	O.I.	C.G.	H.G.
122.7	99.9	83.6	At1g02950	838240	ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
122.5	99.9	116.3	At3g55950	824761	CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3)	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
122.4	99.9	97.1	At2g39830	818570	DAR2 (DA1-RELATED PROTEIN 2)	F:zinc ion binding;P:unknown;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
122.0	99.9	84.0	At1g74510	843792	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
121.5	99.9	31.3	At1g32970	840191	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFM	O.I.	C.G.	H.G.
121.1	99.9	197.1	At1g20823	838674	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV	O.I.	C.G.	H.G.
121.1	99.9	134.9	At5g50720	835144	ATHVA22E	Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	O.I.	C.G.	H.G.
119.4	99.9	124.2	At5g17850	831653	cation exchanger, putative (CAX8)	F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA	O.I.	C.G.	H.G.

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GSM ID	GSM184922
Assay name	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1
GSE experiment	GSE7641: Expression analysis of root cell-types after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184922 Assay name Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

GSM ID GSM184922

Assay name Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt