CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184917

Assay name Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
787.1 100.0 386.2 At4g02090 827380 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
767.5 100.0 300.2 At5g06200 830507 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
705.2 100.0 596.4 At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
684.2 100.0 222.6 At4g26140 828720 BGAL12 (beta-galactosidase 12) putative beta-galactosidase O.I. C.G. H.G.
663.6 100.0 401.1 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
596.3 100.0 364.0 At4g17215 827433 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
545.6 100.0 160.3 At4g05170 825865 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM O.I. C.G. H.G.
533.2 100.0 83.2 At2g44480 819055 BGLU17 (BETA GLUCOSIDASE 17) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
482.4 100.0 319.0 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
479.8 100.0 58.8 At4g21340 827884 B70 F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, intracellular;P O.I. C.G. H.G.
405.1 100.0 286.5 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. O.I. C.G. H.G.
375.8 100.0 259.6 At5g59490 836068 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
369.3 100.0 241.6 At4g20140 827760 GSO1 (GASSHO1) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. O.I. C.G. H.G.
366.1 100.0 286.8 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
363.2 100.0 567.0 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
353.0 100.0 264.1 At2g47630 819376 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:plasma membrane;BPOMFVA O.I. C.G. H.G.
346.4 100.0 310.4 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO O.I. C.G. H.G.
325.2 100.0 387.9 At5g15290 831381 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
321.1 100.0 196.5 At1g80820 844421 CCR2 (CINNAMOYL COA REDUCTASE) Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis. O.I. C.G. H.G.
316.1 100.0 328.7 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
287.3 100.0 611.4 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB O.I. C.G. H.G.
287.3 100.0 468.1 At5g65530 836679 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
285.0 100.0 92.7 At1g14550 838017 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
283.8 100.0 82.6 At5g51680 835242 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;MPOBFVA O.I. C.G. H.G.
277.8 100.0 142.4 At2g22620 816793 lyase F:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBO O.I. C.G. H.G.
274.8 100.0 596.5 At5g42180 834223 peroxidase 64 (PER64) (P64) (PRXR4) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM O.I. C.G. H.G.
258.9 100.0 99.0 At1g43020 840901 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
249.8 100.0 448.2 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV O.I. C.G. H.G.
242.3 100.0 803.9 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
213.0 100.0 90.5 At5g57620 835866 MYB36 (myb domain protein 36) Encodes a putative transcription factor (MYB36). O.I. C.G. H.G.
190.2 100.0 22.6 At3g50190 824181 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
172.8 100.0 93.3 At3g55390 824705 integral membrane family protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
171.7 100.0 69.3 At1g61240 842417 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
165.4 100.0 504.3 At2g28670 817416 disease resistance-responsive family protein / fibroin-related F:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
157.2 99.9 192.8 At2g21100 816645 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
146.7 99.9 72.4 At5g10520 830917 RBK1 (Rop Binding protein Kinases 1) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:defense response, incompatible interaction;C:cytosol, endomembrane system;MPOBFVA O.I. C.G. H.G.
136.6 99.9 138.4 At4g25680 828673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
126.4 99.9 156.7 At4g38410 829998 dehydrin, putative F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
126.3 99.9 100.4 At3g03700 821183 unknown protein F:unknown;P:biological_process unknown;C:unknown;PFOM O.I. C.G. H.G.
124.5 99.9 132.8 At1g03920 839369 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA O.I. C.G. H.G.
114.8 99.9 156.5 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
113.5 99.9 72.9 At2g37950 818372 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
111.6 99.9 61.9 At1g09090 837430 ATRBOHB (respiratory burst oxidase homolog B) F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA O.I. C.G. H.G.
105.7 99.9 97.0 At1g73640 843698 AtRABA6a (Arabidopsis Rab GTPase homolog A6a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. C.G. H.G.
102.9 99.9 266.4 At1g77450 844081 anac032 (Arabidopsis NAC domain containing protein 32) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
97.7 99.9 179.6 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
96.8 99.9 34.6 At4g17785 827500 MYB39 (myb domain protein 39) Encodes a putative transcription factor (MYB39). O.I. C.G. H.G.
95.0 99.9 40.0 At4g15330 827199 CYP705A1 a member of the cytochrome P450 family O.I. C.G. H.G.
93.0 99.9 38.1 At3g55090 824675 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV O.I. C.G. H.G.
91.4 99.9 33.2 At2g18420 816357 - Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein O.I. C.G. H.G.
90.7 99.9 77.8 At1g14040 837965 - F:unknown;P:unknown;C:integral to membrane;FMPO O.I. C.G. H.G.
90.3 99.9 38.1 At2g15300 816019 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
85.9 99.9 123.4 At5g61340 836255 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
85.0 99.9 28.8 At5g16770 831540 AtMYB9 (myb domain protein 9) Member of the R2R3 factor gene family. O.I. C.G. H.G.
84.9 99.9 201.9 At1g32100 840102 PRR1 (PINORESINOL REDUCTASE 1) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol. O.I. C.G. H.G.
80.7 99.9 20.9 At1g76250 843958 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;POM O.I. C.G. H.G.
80.5 99.9 151.4 At5g62520 836372 SRO5 (SIMILAR TO RCD ONE 5) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. O.I. C.G. H.G.
78.7 99.9 104.2 At5g37540 833732 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM O.I. C.G. H.G.
77.4 99.9 106.0 At4g25390 828642 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
73.4 99.9 174.1 At3g06420 819816 ATG8H (autophagy 8h) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. C.G. H.G.
72.7 99.9 63.2 At3g15300 820761 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
70.0 99.9 244.8 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
69.6 99.9 75.8 At5g05790 830464 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
68.7 99.9 166.2 At2g36310 818204 URH1 (URIDINE-RIBOHYDROLASE 1) F:hydrolase activity, inosine nucleosidase activity, adenosine nucleosidase activity, uridine nucleosidase activity;P:uridine catabolic process;C:cytosol;BOMFPA O.I. C.G. H.G.
68.4 99.9 63.5 At5g35580 833523 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
67.1 99.8 51.1 At2g28650 817414 ATEXO70H8 (exocyst subunit EXO70 family protein H8) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
66.6 99.8 62.2 At5g47530 834803 auxin-responsive protein, putative F:unknown;P:multicellular organismal development;C:membrane;PMFOB O.I. C.G. H.G.
66.5 99.8 56.8 At3g23160 821892 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POB O.I. C.G. H.G.
66.3 99.8 66.9 At5g67340 836869 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFB O.I. C.G. H.G.
65.6 99.8 316.0 At4g25810 828686 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) xyloglucan endotransglycosylase-related protein (XTR6) O.I. C.G. H.G.
64.7 99.8 28.6 At1g60750 3767587 oxidoreductase F:oxidoreductase activity;P:oxidation reduction;C:unknown O.I. C.G. H.G.
63.3 99.8 81.3 At4g22120 828301 early-responsive to dehydration protein-related / ERD protein-related F:unknown;P:unknown;C:plasma membrane;FPMO O.I. C.G. H.G.
63.0 99.8 73.7 At5g63590 836478 FLS3 (FLAVONOL SYNTHASE 3) F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
62.8 99.8 59.1 At2g07695 815371 cytochrome c oxidase subunit II, putative F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP O.I. C.G. H.G.
62.7 99.8 27.6 At1g72850 843616 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMFO O.I. C.G. H.G.
62.1 99.8 193.6 At4g13660 827000 PRR2 (PINORESINOL REDUCTASE 2) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. O.I. C.G. H.G.
60.9 99.8 92.5 At3g22830 821854 AT-HSFA6B member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
60.2 99.8 316.8 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. O.I. C.G. H.G.
58.6 99.8 87.0 At5g17850 831653 cation exchanger, putative (CAX8) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA O.I. C.G. H.G.
56.4 99.8 51.9 At4g05100 825855 AtMYB74 (myb domain protein 74) Member of the R2R3 factor gene family. O.I. C.G. H.G.
55.6 99.8 32.4 At5g01380 831895 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA O.I. C.G. H.G.
55.0 99.8 19.6 At1g08670 837389 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
54.7 99.8 65.8 At1g70140 843350 ATFH8 (formin 8) Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton. O.I. C.G. H.G.
53.7 99.8 34.6 At2g47810 819393 NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
53.4 99.8 413.3 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
52.6 99.8 213.8 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
51.5 99.8 98.3 At1g61820 842479 BGLU46 (BETA GLUCOSIDASE 46) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
51.4 99.8 477.5 At4g19880 827734 - F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA O.I. C.G. H.G.
51.3 99.8 162.3 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA O.I. C.G. H.G.
50.8 99.8 293.0 At4g23690 828469 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
50.5 99.8 32.1 At5g56230 835722 PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOB O.I. C.G. H.G.
50.4 99.8 593.7 At3g22600 821832 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;POM O.I. C.G. H.G.
49.6 99.8 70.1 At4g21390 827891 B120 F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
48.7 99.8 329.5 At3g22620 821833 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV O.I. C.G. H.G.
48.4 99.8 181.3 At1g43160 840915 RAP2.6 (related to AP2 6) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
47.6 99.8 298.2 At3g20510 821597 unknown protein F:unknown;P:biological_process unknown;C:nucleus, cytoplasm;MPBFO O.I. C.G. H.G.
47.5 99.8 34.7 At3g59710 825140 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
47.3 99.8 35.6 At4g25380 828641 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
47.1 99.8 15.7 At5g53990 835482 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFV O.I. C.G. H.G.
46.9 99.8 70.5 At4g38620 830018 MYB4 Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
787.1	100.0	386.2	At4g02090	827380	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
767.5	100.0	300.2	At5g06200	830507	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
705.2	100.0	596.4	At3g11550	820328	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
684.2	100.0	222.6	At4g26140	828720	BGAL12 (beta-galactosidase 12)	putative beta-galactosidase	O.I.	C.G.	H.G.
663.6	100.0	401.1	At1g71740	843504	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
596.3	100.0	364.0	At4g17215	827433	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
545.6	100.0	160.3	At4g05170	825865	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM	O.I.	C.G.	H.G.
533.2	100.0	83.2	At2g44480	819055	BGLU17 (BETA GLUCOSIDASE 17)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
482.4	100.0	319.0	At1g61590	842455	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
479.8	100.0	58.8	At4g21340	827884	B70	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, intracellular;P	O.I.	C.G.	H.G.
405.1	100.0	286.5	At2g32300	817791	UCC1 (UCLACYANIN 1)	Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	O.I.	C.G.	H.G.
375.8	100.0	259.6	At5g59490	836068	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
369.3	100.0	241.6	At4g20140	827760	GSO1 (GASSHO1)	Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.	O.I.	C.G.	H.G.
366.1	100.0	286.8	At2g27370	817280	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
363.2	100.0	567.0	At5g66390	836771	peroxidase 72 (PER72) (P72) (PRXR8)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
353.0	100.0	264.1	At2g47630	819376	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:plasma membrane;BPOMFVA	O.I.	C.G.	H.G.
346.4	100.0	310.4	At2g39430	818528	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO	O.I.	C.G.	H.G.
325.2	100.0	387.9	At5g15290	831381	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
321.1	100.0	196.5	At1g80820	844421	CCR2 (CINNAMOYL COA REDUCTASE)	Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.	O.I.	C.G.	H.G.
316.1	100.0	328.7	At2g30210	817571	LAC3 (laccase 3)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
287.3	100.0	611.4	At4g13580	826991	disease resistance-responsive family protein	F:molecular_function unknown;P:unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
287.3	100.0	468.1	At5g65530	836679	protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
285.0	100.0	92.7	At1g14550	838017	anionic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
283.8	100.0	82.6	At5g51680	835242	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cell wall;MPOBFVA	O.I.	C.G.	H.G.
277.8	100.0	142.4	At2g22620	816793	lyase	F:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBO	O.I.	C.G.	H.G.
274.8	100.0	596.5	At5g42180	834223	peroxidase 64 (PER64) (P64) (PRXR4)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM	O.I.	C.G.	H.G.
258.9	100.0	99.0	At1g43020	840901	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
249.8	100.0	448.2	At1g30750	839955	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV	O.I.	C.G.	H.G.
242.3	100.0	803.9	At2g36100	818183	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
213.0	100.0	90.5	At5g57620	835866	MYB36 (myb domain protein 36)	Encodes a putative transcription factor (MYB36).	O.I.	C.G.	H.G.
190.2	100.0	22.6	At3g50190	824181	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
172.8	100.0	93.3	At3g55390	824705	integral membrane family protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
171.7	100.0	69.3	At1g61240	842417	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
165.4	100.0	504.3	At2g28670	817416	disease resistance-responsive family protein / fibroin-related	F:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
157.2	99.9	192.8	At2g21100	816645	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
146.7	99.9	72.4	At5g10520	830917	RBK1 (Rop Binding protein Kinases 1)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:defense response, incompatible interaction;C:cytosol, endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
136.6	99.9	138.4	At4g25680	828673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
126.4	99.9	156.7	At4g38410	829998	dehydrin, putative	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
126.3	99.9	100.4	At3g03700	821183	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PFOM	O.I.	C.G.	H.G.
124.5	99.9	132.8	At1g03920	839369	protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA	O.I.	C.G.	H.G.
114.8	99.9	156.5	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
113.5	99.9	72.9	At2g37950	818372	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
111.6	99.9	61.9	At1g09090	837430	ATRBOHB (respiratory burst oxidase homolog B)	F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA	O.I.	C.G.	H.G.
105.7	99.9	97.0	At1g73640	843698	AtRABA6a (Arabidopsis Rab GTPase homolog A6a)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
102.9	99.9	266.4	At1g77450	844081	anac032 (Arabidopsis NAC domain containing protein 32)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
97.7	99.9	179.6	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
96.8	99.9	34.6	At4g17785	827500	MYB39 (myb domain protein 39)	Encodes a putative transcription factor (MYB39).	O.I.	C.G.	H.G.
95.0	99.9	40.0	At4g15330	827199	CYP705A1	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
93.0	99.9	38.1	At3g55090	824675	ATPase, coupled to transmembrane movement of substances	F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
91.4	99.9	33.2	At2g18420	816357	-	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	O.I.	C.G.	H.G.
90.7	99.9	77.8	At1g14040	837965	-	F:unknown;P:unknown;C:integral to membrane;FMPO	O.I.	C.G.	H.G.
90.3	99.9	38.1	At2g15300	816019	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
85.9	99.9	123.4	At5g61340	836255	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
85.0	99.9	28.8	At5g16770	831540	AtMYB9 (myb domain protein 9)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
84.9	99.9	201.9	At1g32100	840102	PRR1 (PINORESINOL REDUCTASE 1)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
80.7	99.9	20.9	At1g76250	843958	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;POM	O.I.	C.G.	H.G.
80.5	99.9	151.4	At5g62520	836372	SRO5 (SIMILAR TO RCD ONE 5)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	O.I.	C.G.	H.G.
78.7	99.9	104.2	At5g37540	833732	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
77.4	99.9	106.0	At4g25390	828642	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
73.4	99.9	174.1	At3g06420	819816	ATG8H (autophagy 8h)	F:microtubule binding;P:autophagy;C:unknown;MOPFV	O.I.	C.G.	H.G.
72.7	99.9	63.2	At3g15300	820761	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
70.0	99.9	244.8	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
69.6	99.9	75.8	At5g05790	830464	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
68.7	99.9	166.2	At2g36310	818204	URH1 (URIDINE-RIBOHYDROLASE 1)	F:hydrolase activity, inosine nucleosidase activity, adenosine nucleosidase activity, uridine nucleosidase activity;P:uridine catabolic process;C:cytosol;BOMFPA	O.I.	C.G.	H.G.
68.4	99.9	63.5	At5g35580	833523	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
67.1	99.8	51.1	At2g28650	817414	ATEXO70H8 (exocyst subunit EXO70 family protein H8)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
66.6	99.8	62.2	At5g47530	834803	auxin-responsive protein, putative	F:unknown;P:multicellular organismal development;C:membrane;PMFOB	O.I.	C.G.	H.G.
66.5	99.8	56.8	At3g23160	821892	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POB	O.I.	C.G.	H.G.
66.3	99.8	66.9	At5g67340	836869	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFB	O.I.	C.G.	H.G.
65.6	99.8	316.0	At4g25810	828686	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	xyloglucan endotransglycosylase-related protein (XTR6)	O.I.	C.G.	H.G.
64.7	99.8	28.6	At1g60750	3767587	oxidoreductase	F:oxidoreductase activity;P:oxidation reduction;C:unknown	O.I.	C.G.	H.G.
63.3	99.8	81.3	At4g22120	828301	early-responsive to dehydration protein-related / ERD protein-related	F:unknown;P:unknown;C:plasma membrane;FPMO	O.I.	C.G.	H.G.
63.0	99.8	73.7	At5g63590	836478	FLS3 (FLAVONOL SYNTHASE 3)	F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
62.8	99.8	59.1	At2g07695	815371	cytochrome c oxidase subunit II, putative	F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP	O.I.	C.G.	H.G.
62.7	99.8	27.6	At1g72850	843616	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMFO	O.I.	C.G.	H.G.
62.1	99.8	193.6	At4g13660	827000	PRR2 (PINORESINOL REDUCTASE 2)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
60.9	99.8	92.5	At3g22830	821854	AT-HSFA6B	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
60.2	99.8	316.8	At1g05260	837028	RCI3 (RARE COLD INDUCIBLE GENE 3)	Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.	O.I.	C.G.	H.G.
58.6	99.8	87.0	At5g17850	831653	cation exchanger, putative (CAX8)	F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA	O.I.	C.G.	H.G.
56.4	99.8	51.9	At4g05100	825855	AtMYB74 (myb domain protein 74)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
55.6	99.8	32.4	At5g01380	831895	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
55.0	99.8	19.6	At1g08670	837389	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
54.7	99.8	65.8	At1g70140	843350	ATFH8 (formin 8)	Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton.	O.I.	C.G.	H.G.
53.7	99.8	34.6	At2g47810	819393	NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
53.4	99.8	413.3	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
52.6	99.8	213.8	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
51.5	99.8	98.3	At1g61820	842479	BGLU46 (BETA GLUCOSIDASE 46)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
51.4	99.8	477.5	At4g19880	827734	-	F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA	O.I.	C.G.	H.G.
51.3	99.8	162.3	At2g07751	815347	NADH-ubiquinone oxidoreductase chain 3, putative	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA	O.I.	C.G.	H.G.
50.8	99.8	293.0	At4g23690	828469	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
50.5	99.8	32.1	At5g56230	835722	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOB	O.I.	C.G.	H.G.
50.4	99.8	593.7	At3g22600	821832	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;POM	O.I.	C.G.	H.G.
49.6	99.8	70.1	At4g21390	827891	B120	F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
48.7	99.8	329.5	At3g22620	821833	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV	O.I.	C.G.	H.G.
48.4	99.8	181.3	At1g43160	840915	RAP2.6 (related to AP2 6)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
47.6	99.8	298.2	At3g20510	821597	unknown protein	F:unknown;P:biological_process unknown;C:nucleus, cytoplasm;MPBFO	O.I.	C.G.	H.G.
47.5	99.8	34.7	At3g59710	825140	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
47.3	99.8	35.6	At4g25380	828641	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
47.1	99.8	15.7	At5g53990	835482	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFV	O.I.	C.G.	H.G.
46.9	99.8	70.5	At4g38620	830018	MYB4	Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.	O.I.	C.G.	H.G.

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GSM ID	GSM184917
Assay name	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2
GSE experiment	GSE7641: Expression analysis of root cell-types after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184917 Assay name Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

GSM ID GSM184917

Assay name Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt