Microarray experiments to specifically-expressed genes

GSM ID GSM184910
Assay name Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1
GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
916.3100.0421.8At4g38410829998dehydrin, putativeF:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
638.7100.086.8At4g18350827562NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.O.I.C.G.H.G.
618.5100.0105.4At5g60720836193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
597.8100.0423.6At4g34970829649ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)F:actin binding;P:biological_process unknown;C:intracellular;MPOFO.I.C.G.H.G.
583.9100.0163.2At2g27740817320unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAVO.I.C.G.H.G.
511.8100.0164.4At4g08160826365glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinEncodes a putative glycosyl hydrolase family 10 protein (xylanase).O.I.C.G.H.G.
458.9100.0101.3At2g31940817752unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
436.7100.0287.1At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
423.7100.099.5At1g26680839209transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBMO.I.C.G.H.G.
407.5100.0442.2At4g35350829688XCP1 (XYLEM CYSTEINE PEPTIDASE 1)tracheary element vacuolar proteinO.I.C.G.H.G.
391.7100.0427.1At5g19110832031extracellular dermal glycoprotein-related / EDGP-relatedF:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
389.0100.096.0At3g62160825389transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
382.8100.0130.2At3g18660821397PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.O.I.C.G.H.G.
377.1100.0442.1At5g51890835264peroxidaseencodes peroxidase involved in the lignification of tracheary elements (TE) in rootsO.I.C.G.H.G.
373.8100.094.4At5g01930831699(1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAO.I.C.G.H.G.
359.5100.0170.4At4g33930829538glycine-rich proteinEncodes a protein with 14.6% glycine residues, similar to hyphally regulated protein from Candida albicans, PIR2:S58135O.I.C.G.H.G.
358.0100.0137.1At2g34140817975Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
349.8100.0173.1At5g40020833999pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOO.I.C.G.H.G.
321.1100.0209.3At5g54690835558GAUT12 (GALACTURONOSYLTRANSFERASE 12)Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).O.I.C.G.H.G.
318.0100.0230.5At2g04025814929unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
317.7100.089.2At2g43870818991polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
309.0100.042.8At1g05310837030pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVAO.I.C.G.H.G.
292.2100.074.6At3g55720824738unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
286.1100.0161.4At5g07080830599transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
285.3100.0114.3At2g21610816699pectinesterase family proteinF:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMOO.I.C.G.H.G.
285.0100.0157.8At2g37090818285IRX9 (IRREGULAR XYLEM 9)The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.O.I.C.G.H.G.
265.5100.0176.5At2g01300814658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
251.8100.095.5At1g47410841146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
250.2100.0609.6At1g20850838677XCP2 (xylem cysteine peptidase 2)F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAFO.I.C.G.H.G.
229.3100.039.1At5g55090835600MAPKKK15member of MEKK subfamilyO.I.C.G.H.G.
221.2100.0204.0At1g65570842868polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
219.3100.062.0At1g54790841920GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
217.5100.0185.1At4g18425827573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
215.0100.058.0At1g09440837467protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
212.9100.0395.1At1g50060841430pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
212.7100.0198.8At1g04610839474flavin-containing monooxygenase / FMO (YUCCA3)F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPAO.I.C.G.H.G.
200.9100.0215.5At5g17650831631glycine/proline-rich proteinF:unknown;P:unknown;C:unknown;MFPBOVAO.I.C.G.H.G.
200.7100.089.6At2g34790818044MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAMO.I.C.G.H.G.
198.0100.0213.3At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
192.3100.060.3At5g01380831895transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVAO.I.C.G.H.G.
187.7100.0100.9At1g70500843386polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
186.3100.084.6At4g23590828459aminotransferase class I and II family proteinF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
184.7100.042.3At4g18450827576ethylene-responsive factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
182.8100.0225.9At3g22910821863calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
169.6100.095.7At1g58370842206RXF12Encodes a protein with xylanase activity.O.I.C.G.H.G.
164.9100.035.9At5g19870832108unknown proteinF:unknown;P:unknown;C:endomembrane system;MPO.I.C.G.H.G.
163.799.9118.3At4g26880828795stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFMO.I.C.G.H.G.
161.399.9169.8At5g10300830894MES5 (METHYL ESTERASE 5)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
157.499.964.8At5g12870831127MYB46 (MYB DOMAIN PROTEIN 46)Member of the R2R3 factor gene family.O.I.C.G.H.G.
154.599.9346.9At3g19430821477late embryogenesis abundant protein-related / LEA protein-relatedF:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVAO.I.C.G.H.G.
151.899.944.8At1g21340838733Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
149.599.954.6At1g58070842174unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
144.999.9269.4At4g17490827463ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
143.699.962.7At3g25740822165MAP1B (METHIONINE AMINOPEPTIDASE 1C)Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B.O.I.C.G.H.G.
139.199.9482.1At2g36950818269heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
138.099.992.3At1g08340837354rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBAO.I.C.G.H.G.
137.699.9276.1At3g55970824763oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
131.099.945.4At5g67230836858glycosyl transferase family 43 proteinF:galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, transferase activity, transferring glycosyl groups;P:biological_process unknown;C:membrane;MPOO.I.C.G.H.G.
129.599.993.8At4g23060828405IQD22 (IQ-domain 22)F:calmodulin binding;P:response to gibberellin stimulus;C:unknown;POMFO.I.C.G.H.G.
128.599.9204.2At1g75860843919unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
128.499.928.6At2g46760819289FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMAO.I.C.G.H.G.
127.699.982.9At5g01360830298-F:unknown;P:unknown;C:unknown;PMFO.I.C.G.H.G.
122.199.9246.3At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.O.I.C.G.H.G.
121.499.9144.2At3g02800821239phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphataseF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBMO.I.C.G.H.G.
119.999.9174.3At5g67080836843MAPKKK19member of MEKK subfamilyO.I.C.G.H.G.
118.899.9222.5At3g27200822339plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMFO.I.C.G.H.G.
117.199.932.9At1g55180841961PLDEPSILON (PHOSPHOLIPASE D ALPHA 4)member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class. Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.O.I.C.G.H.G.
116.599.957.6At4g00230827949XSP1 (xylem serine peptidase 1)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:cell wall, plant-type cell wall;BPOFMAO.I.C.G.H.G.
115.399.9140.3At3g62020825375GLP10 (GERMIN-LIKE PROTEIN 10)germin-like protein (GLP10)O.I.C.G.H.G.
113.999.956.5At2g32510817812MAPKKK17member of MEKK subfamilyO.I.C.G.H.G.
112.999.9105.9At5g03260831887LAC11 (laccase 11)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
112.099.976.8At1g24600839074unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
111.999.9219.1At3g16920820947chitinaseF:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOFO.I.C.G.H.G.
110.399.9280.1At5g59290836047UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.O.I.C.G.H.G.
109.599.9229.4At1g32100840102PRR1 (PINORESINOL REDUCTASE 1)Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.O.I.C.G.H.G.
108.699.933.2At4g00220828084JLO (JAGGED LATERAL ORGANS)Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.O.I.C.G.H.G.
108.199.952.3At4g18050827530PGP9 (P-GLYCOPROTEIN 9)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
104.899.974.6At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
104.799.9265.2At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
103.699.953.5At1g70130843349lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
101.899.984.6At1g32860840180glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POFO.I.C.G.H.G.
101.799.9112.7At5g62580836379bindingF:binding;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
99.299.922.9At5g45970834637ARAC2 (ARABIDOPSIS RAC-LIKE 2)Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.O.I.C.G.H.G.
99.099.976.9At4g28720828993flavin-containing monooxygenase family protein / FMO family proteinF:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPAO.I.C.G.H.G.
98.699.950.7At5g14020831250-F:unknown;P:N-terminal protein myristoylation;C:vacuole;PO.I.C.G.H.G.
97.399.949.4At1g04180837024flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPAO.I.C.G.H.G.
97.399.930.1At4g36160829773ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76)Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.O.I.C.G.H.G.
97.199.946.4At1g07590837272pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:response to cadmium ion;C:mitochondrion;POMFBO.I.C.G.H.G.
96.999.9178.8At5g10830830950embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAO.I.C.G.H.G.
95.899.9262.2At3g19240821458-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPMO.I.C.G.H.G.
94.999.9196.4At5g25930832662leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAO.I.C.G.H.G.
93.499.9242.5At1g63120842616ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.O.I.C.G.H.G.
93.199.932.4At5g57420835848IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33)Belongs to auxin inducible gene family.O.I.C.G.H.G.
92.699.949.9At1g75090843846methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFO.I.C.G.H.G.
92.099.9125.7At2g15490816041UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOFO.I.C.G.H.G.
91.399.9148.4At1g20070838596unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
90.799.951.9At1g07290837240nucleotide-sugar transmembrane transporterF:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
90.299.967.7At1g22985838906AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
89.099.953.0At2g14095815895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFBO.I.C.G.H.G.
88.699.9140.5At2g27550817302ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage