Microarray experiments to specifically-expressed genes

GSM ID GSM184907
Assay name Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 1
GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
639.5100.0145.1At1g53700841807WAG1 (WAG 1)The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.
410.3100.0134.9At1g10560837597PUB18 (PLANT U-BOX 18)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.
318.9100.044.8At4g26890828796MAPKKK16member of MEKK subfamilyO.I.C.G.H.G.
313.0100.0102.5At5g16230831483acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOMO.I.C.G.H.G.
311.4100.0109.3At4g23590828459aminotransferase class I and II family proteinF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
281.9100.0371.9At3g06460819823GNS1/SUR4 membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPVO.I.C.G.H.G.
264.4100.081.3At2g43870818991polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
253.7100.0138.0At2g32610817821ATCSLB01encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
253.2100.039.0At3g59850825155polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
239.4100.046.1At1g17310838303MADS-box protein (AGL100)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
229.0100.061.5At5g51520835226invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
222.5100.070.5At2g31940817752unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
217.2100.042.2At2g24400816976auxin-responsive protein, putative / small auxin up RNA (SAUR_D)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
210.1100.078.4At3g20160821560geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAVO.I.C.G.H.G.
205.8100.0198.8At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
185.3100.0100.1At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
183.1100.089.2At1g33750840266terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
182.5100.082.4At3g06210819795bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
177.6100.0135.4At4g31320829259auxin-responsive protein, putative / small auxin up RNA (SAUR_C)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
174.7100.083.1At1g11000837643MLO4 (MILDEW RESISTANCE LOCUS O 4)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
172.3100.070.9At2g35770818149scpl28 (serine carboxypeptidase-like 28)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
170.9100.068.7At2g43880818992polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
164.5100.081.6At3g14530820678geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:chloroplast;OBFPMAVO.I.C.G.H.G.
160.699.961.9At2g37700818347catalytic/ iron ion binding / oxidoreductaseF:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFVO.I.C.G.H.G.
154.799.932.9At4g11780826784unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBO.I.C.G.H.G.
154.699.973.2At2g34340817996unknown proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
149.999.9250.5At3g49190824080condensation domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAFO.I.C.G.H.G.
149.199.970.2At1g05280837026fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
139.699.980.0At2g21610816699pectinesterase family proteinF:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMOO.I.C.G.H.G.
134.699.9152.0At2g15490816041UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOFO.I.C.G.H.G.
134.599.9110.4At2g32620817822ATCSLB02encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
127.099.9113.7At1g53180841752unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
126.799.984.9At5g04970830379pectinesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVAO.I.C.G.H.G.
126.499.9142.4At5g15870831444glycosyl hydrolase family 81 proteinF:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:response to cyclopentenone;C:unknown;FPOMVBO.I.C.G.H.G.
121.499.955.5At1g55240841967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO.I.C.G.H.G.
115.399.999.3At4g26880828795stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFMO.I.C.G.H.G.
113.699.947.1At4g01240827909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
107.599.9232.0At4g17490827463ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.C.G.H.G.
106.799.948.8At2g30340817584LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBAO.I.C.G.H.G.
104.999.9328.9At1g06090837118fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPVO.I.C.G.H.G.
104.999.992.3At1g74490843790protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
103.599.9130.5At4g22640828360-F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
103.399.9139.4At1g65570842868polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
100.299.9102.6At3g27880822408unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
100.099.979.5At1g12740837830CYP87A2encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
97.599.976.2At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
96.299.9254.3At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
94.299.9153.0At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
93.599.9134.7At4g38410829998dehydrin, putativeF:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
91.699.9162.8At5g66280836760GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)GDP-D-mannose 4,6-dehydrataseO.I.C.G.H.G.
90.299.978.9At5g04200830299AtMC9 (metacaspase 9)F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOAO.I.C.G.H.G.
87.599.9117.4At4g18425827573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
87.099.946.7At1g04180837024flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPAO.I.C.G.H.G.
86.599.9112.7At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
86.599.997.1At1g54120841852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
86.099.9130.2At4g27400828848late embryogenesis abundant protein-related / LEA protein-relatedF:unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
84.499.999.5At2g01300814658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
83.699.949.8At1g07290837240nucleotide-sugar transmembrane transporterF:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
83.699.939.9At3g55720824738unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
82.699.970.7At2g17080816213unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBVO.I.C.G.H.G.
82.599.9182.0At4g00080828192UNE11 (unfertilized embryo sac 11)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;PO.I.C.G.H.G.
82.299.9253.1At3g19430821477late embryogenesis abundant protein-related / LEA protein-relatedF:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVAO.I.C.G.H.G.
80.699.9243.2At1g50060841430pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
80.499.920.9At1g50720841494stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFMO.I.C.G.H.G.
79.299.945.5At1g33280840223ANAC015 (Arabidopsis NAC domain containing protein 15)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
78.999.968.6At1g05100839324MAPKKK18member of MEKK subfamilyO.I.C.G.H.G.
78.899.9193.8At3g16440820892ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)myrosinase-binding protein-like protein (AtMLP-300B) mRNA,O.I.C.G.H.G.
77.999.964.1At1g80110844351ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11)F:carbohydrate binding;P:unknown;C:nucleus;PO.I.C.G.H.G.
75.899.9103.7At2g23630816895sks16 (SKU5 Similar 16)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
75.799.9200.2At5g10130830877pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.C.G.H.G.
75.599.935.5At3g12955820481auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
74.499.948.4At2g14095815895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFBO.I.C.G.H.G.
73.799.9158.8At4g30850829209HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptorsO.I.C.G.H.G.
73.199.913.6At1g47620841171CYP96A8member of CYP96AO.I.C.G.H.G.
72.599.954.8At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.C.G.H.G.
72.399.9340.5At1g78340844169ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
71.199.937.4At5g10720830938AHK5 (ARABIDOPSIS HISTIDINE KINASE 5)member of Histidine KinaseO.I.C.G.H.G.
70.999.996.6At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.O.I.C.G.H.G.
70.399.970.3At2g30130817565ASL5Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression.O.I.C.G.H.G.
70.099.999.7At4g01630827983ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
69.699.933.4At2g43480818949peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
67.999.994.0At2g43600818962glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
65.899.829.5At1g21340838733Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
64.899.8268.1At1g17180838289ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
64.699.862.4At1g14220837983ribonuclease T2 family proteinF:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOVO.I.C.G.H.G.
63.399.835.3At3g46700823823UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
63.299.8109.4At4g37160829870sks15 (SKU5 Similar 15)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
62.999.8303.3At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
61.299.852.1At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
59.799.862.1At2g39040818490peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
59.699.8315.6At2g36950818269heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
58.899.8280.7At1g52050841634jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
58.199.853.3At5g19340832054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBVO.I.C.G.H.G.
57.499.8251.1At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
56.799.8158.7At1g26820839225RNS3 (RIBONUCLEASE 3)Encodes ribonuclease RNS3.O.I.C.G.H.G.
56.699.829.0At3g14510820674geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAVO.I.C.G.H.G.
56.499.8413.7At5g54370835525late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
55.999.854.5At3g25730822164AP2 domain-containing transcription factor, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;POO.I.C.G.H.G.
55.799.826.2At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
55.299.8158.3At5g14730831325unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.



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