CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184905

Assay name Arabidopsis, root cells, protophloem, standard conditions, replicate 2

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2700.7 100.0 776.6 At4g16400 827334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2587.9 100.0 1037.3 At3g07420 819930 NS2 Encodes an asparaginyl-tRNA synthetase. O.I. C.G. H.G.
2490.8 100.0 659.9 At4g37445 829899 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2329.1 100.0 821.3 At2g27140 817256 heat shock family protein F:molecular_function unknown;P:response to heat;C:membrane;PBOM O.I. C.G. H.G.
2086.0 100.0 325.3 At3g18260 821354 reticulon family protein (RTNLB9) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF O.I. C.G. H.G.
2057.5 100.0 424.2 At5g61280 836249 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
1970.6 100.0 473.9 At1g05770 837085 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1967.5 100.0 418.7 At2g41200 818719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1955.3 100.0 637.5 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance O.I. C.G. H.G.
1939.2 100.0 288.6 At1g11570 837700 nuclear transport factor 2 (NTF2), putative F:protein transporter activity;P:transport, protein import into nucleus;C:nucleus, intracellular;MFPO O.I. C.G. H.G.
1916.8 100.0 469.0 At5g02140 831881 thaumatin-like protein, putative F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV O.I. C.G. H.G.
1852.3 100.0 431.8 At4g12580 826871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
1772.7 100.0 323.4 At3g47180 823871 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
1756.5 100.0 247.7 At1g05610 837066 APS2 (ADP-glucose pyrophoshorylase small subunit 2) Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested. O.I. C.G. H.G.
1662.6 100.0 605.0 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). O.I. C.G. H.G.
1658.2 100.0 709.9 At5g04890 830370 RTM2 (RESTRICTED TEV MOVEMENT 2) Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs). O.I. C.G. H.G.
1649.0 100.0 437.3 At4g21310 827879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1585.9 100.0 417.1 At3g17380 821002 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
1534.3 100.0 267.5 At1g68230 843152 reticulon family protein (RTNLB14) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
1525.9 100.0 297.1 At1g61760 842473 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1487.9 100.0 336.0 At5g25370 832609 PLDALPHA3 (PHOSPHLIPASE D ALPHA 3) member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response. O.I. C.G. H.G.
1467.4 100.0 362.0 At4g35970 829751 APX5 (ASCORBATE PEROXIDASE 5) Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. O.I. C.G. H.G.
1444.8 100.0 152.4 At1g10460 837586 GLP7 (GERMIN-LIKE PROTEIN 7) germin-like protein (GLP7) O.I. C.G. H.G.
1429.7 100.0 322.2 At3g13590 820561 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO O.I. C.G. H.G.
1407.3 100.0 254.6 At1g31200 840008 ATPP2-A9 (Phloem protein 2-A9) F:carbohydrate binding;P:unknown;C:unknown;P O.I. C.G. H.G.
1378.2 100.0 374.4 At3g15800 820823 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PO O.I. C.G. H.G.
1360.1 100.0 429.9 At4g09950 826585 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
1325.7 100.0 113.0 At1g54330 841874 ANAC020 (Arabidopsis NAC domain containing protein 20) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
1323.9 100.0 458.8 At5g48060 834858 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
1317.9 100.0 421.0 At1g63310 842637 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1192.2 100.0 189.8 At5g67050 836840 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV O.I. C.G. H.G.
1192.0 100.0 301.1 At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P O.I. C.G. H.G.
1157.7 100.0 323.6 At5g49320 834992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1150.6 100.0 199.0 At1g62045 842500 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1149.6 100.0 143.3 At5g38770 833868 AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1111.6 100.0 381.7 At2g14620 815950 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
1091.2 100.0 253.0 At5g45320 834568 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1078.6 100.0 134.9 At2g18380 816353 transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
1016.9 100.0 137.2 At4g36620 829814 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
999.6 100.0 379.2 At1g77700 844106 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOV O.I. C.G. H.G.
999.3 100.0 171.5 At3g03200 821226 anac045 (Arabidopsis NAC domain containing protein 45) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB O.I. C.G. H.G.
989.8 100.0 225.3 At5g38070 833787 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
966.6 100.0 374.3 At1g29520 839829 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
936.1 100.0 94.6 At3g25855 822180 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
929.8 100.0 452.1 At5g40980 834100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
921.5 100.0 187.2 At5g48690 834927 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
904.9 100.0 238.8 At1g06490 837160 ATGSL07 (glucan synthase-like 7) encodes a gene similar to callose synthase O.I. C.G. H.G.
885.1 100.0 222.6 At3g10680 820237 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA O.I. C.G. H.G.
868.0 100.0 400.0 At5g18970 832015 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
861.9 100.0 115.9 At1g68430 843172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
824.2 100.0 318.0 At3g58350 825004 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
797.0 100.0 388.8 At2g46630 3768746 unknown protein F:unknown;P:unknown;C:chloroplast O.I. C.G. H.G.
755.7 100.0 128.5 At5g04310 830310 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
753.6 100.0 236.0 At5g03510 831818 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO O.I. C.G. H.G.
739.3 100.0 205.1 At1g02950 838240 ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
733.9 100.0 122.7 At5g11990 831072 proline-rich family protein F:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVA O.I. C.G. H.G.
729.8 100.0 248.5 At5g56720 835773 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA O.I. C.G. H.G.
725.8 100.0 105.9 At4g16640 827365 matrix metalloproteinase, putative F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA O.I. C.G. H.G.
710.4 100.0 87.9 At1g69970 843334 CLE26 (CLAVATA3/ESR-RELATED 26) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo. O.I. C.G. H.G.
692.2 100.0 120.8 At1g65910 842903 anac028 (Arabidopsis NAC domain containing protein 28) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
680.8 100.0 177.3 At5g20870 832210 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB O.I. C.G. H.G.
679.8 100.0 316.4 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
653.9 100.0 126.8 At3g18670 821398 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFAV O.I. C.G. H.G.
634.0 100.0 658.1 At3g20870 821636 metal transporter family protein F:metal ion transmembrane transporter activity;P:metal ion transport;C:endomembrane system, membrane;BMOAFP O.I. C.G. H.G.
623.6 100.0 53.0 At1g75720 843906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
621.5 100.0 305.5 At5g50720 835144 ATHVA22E Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. O.I. C.G. H.G.
583.4 100.0 126.5 At4g24250 828526 MLO13 (MILDEW RESISTANCE LOCUS O 13) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
580.4 100.0 282.5 At2g32280 817788 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
566.9 100.0 310.7 At3g03610 821208 phagocytosis and cell motility protein ELMO1-related F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF O.I. C.G. H.G.
552.9 100.0 284.9 At4g33490 829486 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMF O.I. C.G. H.G.
539.0 100.0 110.5 At5g01480 831674 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
522.7 100.0 200.6 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB O.I. C.G. H.G.
509.5 100.0 86.8 At2g34530 818016 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
495.8 100.0 123.9 At1g13920 837952 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
490.0 100.0 82.4 At4g03500 827731 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFPBVA O.I. C.G. H.G.
489.5 100.0 392.2 At3g20570 821604 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV O.I. C.G. H.G.
487.9 100.0 177.0 At2g41300 818729 strictosidine synthase F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA O.I. C.G. H.G.
459.8 100.0 62.7 At1g11915 837741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
443.2 100.0 167.8 At5g03530 831810 RABC2A (RAB GTPASE HOMOLOG C2A) Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes. O.I. C.G. H.G.
442.4 100.0 69.5 At5g61260 836247 chromosome scaffold protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
410.7 100.0 634.5 At3g63000 825475 NPL41 (NPL4-LIKE PROTEIN 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
406.1 100.0 59.5 At2g34540 818017 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
404.0 100.0 44.6 At1g76770 844011 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA O.I. C.G. H.G.
388.6 100.0 257.0 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
385.7 100.0 206.2 At5g37180 833692 SUS5 Encodes a protein with sucrose synthase activity (SUS5). O.I. C.G. H.G.
364.2 100.0 132.3 At2g15310 816020 ATARFB1A (ADP-ribosylation factor B1A) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. O.I. C.G. H.G.
362.2 100.0 69.5 At5g26190 832688 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM O.I. C.G. H.G.
358.0 100.0 125.8 At1g79430 844281 APL (ALTERED PHLOEM DEVELOPMENT) Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches. O.I. C.G. H.G.
353.6 100.0 177.1 At5g51260 835200 acid phosphatase, putative F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOM O.I. C.G. H.G.
342.1 100.0 49.9 At5g67550 836891 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
334.4 100.0 79.7 At5g04680 830346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
324.0 100.0 122.6 At4g00890 826266 proline-rich family protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
316.6 100.0 219.3 At5g42720 834281 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO O.I. C.G. H.G.
307.0 100.0 90.6 At2g37590 818336 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFA O.I. C.G. H.G.
305.1 100.0 51.6 At1g61830 3767602 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
296.5 100.0 74.8 At4g35290 829682 GLUR2 (GLUTAMATE RECEPTOR 2) Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
293.6 100.0 153.7 At5g62960 836416 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
292.6 100.0 239.2 At4g23900 828490 nucleoside diphosphate kinase 4 (NDK4) F:nucleoside diphosphate kinase activity, ATP binding;P:UTP biosynthetic process, GTP biosynthetic process, CTP biosynthetic process;C:mitochondrion;BOMPAFV O.I. C.G. H.G.
289.5 100.0 242.9 At3g49360 824098 glucosamine/galactosamine-6-phosphate isomerase family protein F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP O.I. C.G. H.G.
284.7 100.0 66.4 At2g35585 818124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2700.7	100.0	776.6	At4g16400	827334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2587.9	100.0	1037.3	At3g07420	819930	NS2	Encodes an asparaginyl-tRNA synthetase.	O.I.	C.G.	H.G.
2490.8	100.0	659.9	At4g37445	829899	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2329.1	100.0	821.3	At2g27140	817256	heat shock family protein	F:molecular_function unknown;P:response to heat;C:membrane;PBOM	O.I.	C.G.	H.G.
2086.0	100.0	325.3	At3g18260	821354	reticulon family protein (RTNLB9)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF	O.I.	C.G.	H.G.
2057.5	100.0	424.2	At5g61280	836249	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
1970.6	100.0	473.9	At1g05770	837085	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1967.5	100.0	418.7	At2g41200	818719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1955.3	100.0	637.5	At1g05760	837084	RTM1 (restricted tev movement 1)	Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance	O.I.	C.G.	H.G.
1939.2	100.0	288.6	At1g11570	837700	nuclear transport factor 2 (NTF2), putative	F:protein transporter activity;P:transport, protein import into nucleus;C:nucleus, intracellular;MFPO	O.I.	C.G.	H.G.
1916.8	100.0	469.0	At5g02140	831881	thaumatin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV	O.I.	C.G.	H.G.
1852.3	100.0	431.8	At4g12580	826871	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
1772.7	100.0	323.4	At3g47180	823871	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
1756.5	100.0	247.7	At1g05610	837066	APS2 (ADP-glucose pyrophoshorylase small subunit 2)	Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.	O.I.	C.G.	H.G.
1662.6	100.0	605.0	At1g73370	843672	SUS6 (SUCROSE SYNTHASE 6)	Encodes a protein with sucrose synthase activity (SUS6).	O.I.	C.G.	H.G.
1658.2	100.0	709.9	At5g04890	830370	RTM2 (RESTRICTED TEV MOVEMENT 2)	Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).	O.I.	C.G.	H.G.
1649.0	100.0	437.3	At4g21310	827879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1585.9	100.0	417.1	At3g17380	821002	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
1534.3	100.0	267.5	At1g68230	843152	reticulon family protein (RTNLB14)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
1525.9	100.0	297.1	At1g61760	842473	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1487.9	100.0	336.0	At5g25370	832609	PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)	member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	O.I.	C.G.	H.G.
1467.4	100.0	362.0	At4g35970	829751	APX5 (ASCORBATE PEROXIDASE 5)	Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	O.I.	C.G.	H.G.
1444.8	100.0	152.4	At1g10460	837586	GLP7 (GERMIN-LIKE PROTEIN 7)	germin-like protein (GLP7)	O.I.	C.G.	H.G.
1429.7	100.0	322.2	At3g13590	820561	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO	O.I.	C.G.	H.G.
1407.3	100.0	254.6	At1g31200	840008	ATPP2-A9 (Phloem protein 2-A9)	F:carbohydrate binding;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
1378.2	100.0	374.4	At3g15800	820823	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PO	O.I.	C.G.	H.G.
1360.1	100.0	429.9	At4g09950	826585	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
1325.7	100.0	113.0	At1g54330	841874	ANAC020 (Arabidopsis NAC domain containing protein 20)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1323.9	100.0	458.8	At5g48060	834858	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
1317.9	100.0	421.0	At1g63310	842637	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1192.2	100.0	189.8	At5g67050	836840	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV	O.I.	C.G.	H.G.
1192.0	100.0	301.1	At3g20450	821590	-	F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P	O.I.	C.G.	H.G.
1157.7	100.0	323.6	At5g49320	834992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1150.6	100.0	199.0	At1g62045	842500	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1149.6	100.0	143.3	At5g38770	833868	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1111.6	100.0	381.7	At2g14620	815950	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
1091.2	100.0	253.0	At5g45320	834568	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1078.6	100.0	134.9	At2g18380	816353	transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
1016.9	100.0	137.2	At4g36620	829814	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
999.6	100.0	379.2	At1g77700	844106	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOV	O.I.	C.G.	H.G.
999.3	100.0	171.5	At3g03200	821226	anac045 (Arabidopsis NAC domain containing protein 45)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB	O.I.	C.G.	H.G.
989.8	100.0	225.3	At5g38070	833787	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
966.6	100.0	374.3	At1g29520	839829	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
936.1	100.0	94.6	At3g25855	822180	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
929.8	100.0	452.1	At5g40980	834100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
921.5	100.0	187.2	At5g48690	834927	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
904.9	100.0	238.8	At1g06490	837160	ATGSL07 (glucan synthase-like 7)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
885.1	100.0	222.6	At3g10680	820237	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA	O.I.	C.G.	H.G.
868.0	100.0	400.0	At5g18970	832015	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
861.9	100.0	115.9	At1g68430	843172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
824.2	100.0	318.0	At3g58350	825004	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
797.0	100.0	388.8	At2g46630	3768746	unknown protein	F:unknown;P:unknown;C:chloroplast	O.I.	C.G.	H.G.
755.7	100.0	128.5	At5g04310	830310	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
753.6	100.0	236.0	At5g03510	831818	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO	O.I.	C.G.	H.G.
739.3	100.0	205.1	At1g02950	838240	ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
733.9	100.0	122.7	At5g11990	831072	proline-rich family protein	F:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVA	O.I.	C.G.	H.G.
729.8	100.0	248.5	At5g56720	835773	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA	O.I.	C.G.	H.G.
725.8	100.0	105.9	At4g16640	827365	matrix metalloproteinase, putative	F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA	O.I.	C.G.	H.G.
710.4	100.0	87.9	At1g69970	843334	CLE26 (CLAVATA3/ESR-RELATED 26)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo.	O.I.	C.G.	H.G.
692.2	100.0	120.8	At1g65910	842903	anac028 (Arabidopsis NAC domain containing protein 28)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
680.8	100.0	177.3	At5g20870	832210	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB	O.I.	C.G.	H.G.
679.8	100.0	316.4	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
653.9	100.0	126.8	At3g18670	821398	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOPBFAV	O.I.	C.G.	H.G.
634.0	100.0	658.1	At3g20870	821636	metal transporter family protein	F:metal ion transmembrane transporter activity;P:metal ion transport;C:endomembrane system, membrane;BMOAFP	O.I.	C.G.	H.G.
623.6	100.0	53.0	At1g75720	843906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
621.5	100.0	305.5	At5g50720	835144	ATHVA22E	Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	O.I.	C.G.	H.G.
583.4	100.0	126.5	At4g24250	828526	MLO13 (MILDEW RESISTANCE LOCUS O 13)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
580.4	100.0	282.5	At2g32280	817788	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
566.9	100.0	310.7	At3g03610	821208	phagocytosis and cell motility protein ELMO1-related	F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF	O.I.	C.G.	H.G.
552.9	100.0	284.9	At4g33490	829486	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMF	O.I.	C.G.	H.G.
539.0	100.0	110.5	At5g01480	831674	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
522.7	100.0	200.6	At2g39830	818570	DAR2 (DA1-RELATED PROTEIN 2)	F:zinc ion binding;P:unknown;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
509.5	100.0	86.8	At2g34530	818016	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
495.8	100.0	123.9	At1g13920	837952	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
490.0	100.0	82.4	At4g03500	827731	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
489.5	100.0	392.2	At3g20570	821604	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV	O.I.	C.G.	H.G.
487.9	100.0	177.0	At2g41300	818729	strictosidine synthase	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA	O.I.	C.G.	H.G.
459.8	100.0	62.7	At1g11915	837741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
443.2	100.0	167.8	At5g03530	831810	RABC2A (RAB GTPASE HOMOLOG C2A)	Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.	O.I.	C.G.	H.G.
442.4	100.0	69.5	At5g61260	836247	chromosome scaffold protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
410.7	100.0	634.5	At3g63000	825475	NPL41 (NPL4-LIKE PROTEIN 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
406.1	100.0	59.5	At2g34540	818017	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
404.0	100.0	44.6	At1g76770	844011	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA	O.I.	C.G.	H.G.
388.6	100.0	257.0	At4g18340	827561	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
385.7	100.0	206.2	At5g37180	833692	SUS5	Encodes a protein with sucrose synthase activity (SUS5).	O.I.	C.G.	H.G.
364.2	100.0	132.3	At2g15310	816020	ATARFB1A (ADP-ribosylation factor B1A)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
362.2	100.0	69.5	At5g26190	832688	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM	O.I.	C.G.	H.G.
358.0	100.0	125.8	At1g79430	844281	APL (ALTERED PHLOEM DEVELOPMENT)	Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.	O.I.	C.G.	H.G.
353.6	100.0	177.1	At5g51260	835200	acid phosphatase, putative	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOM	O.I.	C.G.	H.G.
342.1	100.0	49.9	At5g67550	836891	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
334.4	100.0	79.7	At5g04680	830346	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
324.0	100.0	122.6	At4g00890	826266	proline-rich family protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
316.6	100.0	219.3	At5g42720	834281	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
307.0	100.0	90.6	At2g37590	818336	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFA	O.I.	C.G.	H.G.
305.1	100.0	51.6	At1g61830	3767602	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
296.5	100.0	74.8	At4g35290	829682	GLUR2 (GLUTAMATE RECEPTOR 2)	Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
293.6	100.0	153.7	At5g62960	836416	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
292.6	100.0	239.2	At4g23900	828490	nucleoside diphosphate kinase 4 (NDK4)	F:nucleoside diphosphate kinase activity, ATP binding;P:UTP biosynthetic process, GTP biosynthetic process, CTP biosynthetic process;C:mitochondrion;BOMPAFV	O.I.	C.G.	H.G.
289.5	100.0	242.9	At3g49360	824098	glucosamine/galactosamine-6-phosphate isomerase family protein	F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP	O.I.	C.G.	H.G.
284.7	100.0	66.4	At2g35585	818124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM184905
Assay name	Arabidopsis, root cells, protophloem, standard conditions, replicate 2
GSE experiment	GSE7641: Expression analysis of root cell-types after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184905 Assay name Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

GSM ID GSM184905

Assay name Arabidopsis, root cells, protophloem, standard conditions, replicate 2

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt