CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184904

Assay name Arabidopsis, root cells, protophloem, standard conditions, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1752.6 100.0 112.9 At5g67550 836891 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1659.6 100.0 213.3 At4g24250 828526 MLO13 (MILDEW RESISTANCE LOCUS O 13) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
1640.5 100.0 225.4 At1g13920 837952 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
1505.7 100.0 310.9 At2g41300 818729 strictosidine synthase F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA O.I. C.G. H.G.
1402.1 100.0 399.7 At1g05770 837085 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1358.0 100.0 386.9 At5g37180 833692 SUS5 Encodes a protein with sucrose synthase activity (SUS5). O.I. C.G. H.G.
1316.1 100.0 223.7 At5g48690 834927 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
1287.6 100.0 330.1 At5g56720 835773 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA O.I. C.G. H.G.
1284.6 100.0 431.5 At1g29520 839829 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
1265.8 100.0 270.6 At1g61760 842473 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1257.6 100.0 357.6 At3g15800 820823 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PO O.I. C.G. H.G.
1244.2 100.0 270.2 At5g45320 834568 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1206.3 100.0 236.0 At5g20870 832210 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB O.I. C.G. H.G.
1192.1 100.0 435.4 At5g48060 834858 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
1188.6 100.0 476.7 At3g01680 821097 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1180.7 100.0 368.1 At5g02140 831881 thaumatin-like protein, putative F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV O.I. C.G. H.G.
1180.0 100.0 359.8 At3g17380 821002 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
1170.5 100.0 410.3 At1g77700 844106 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOV O.I. C.G. H.G.
1143.9 100.0 300.7 At5g67460 836882 glycosyl hydrolase family protein 17 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM O.I. C.G. H.G.
1099.7 100.0 456.7 At2g46630 3768746 unknown protein F:unknown;P:unknown;C:chloroplast O.I. C.G. H.G.
1096.1 100.0 449.5 At5g18970 832015 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P O.I. C.G. H.G.
1083.6 100.0 121.8 At5g22870 832350 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1079.6 100.0 180.6 At5g67050 836840 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV O.I. C.G. H.G.
1050.9 100.0 90.3 At3g26350 822239 - F:unknown;P:unknown;C:chloroplast;MPFOVBA O.I. C.G. H.G.
1041.1 100.0 256.2 At1g06490 837160 ATGSL07 (glucan synthase-like 7) encodes a gene similar to callose synthase O.I. C.G. H.G.
1035.7 100.0 95.1 At2g34540 818017 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1034.4 100.0 477.2 At1g73370 843672 SUS6 (SUCROSE SYNTHASE 6) Encodes a protein with sucrose synthase activity (SUS6). O.I. C.G. H.G.
1025.5 100.0 373.3 At4g09950 826585 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
1010.5 100.0 244.2 At3g47180 823871 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
1009.9 100.0 124.9 At4g16640 827365 matrix metalloproteinase, putative F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA O.I. C.G. H.G.
983.2 100.0 273.2 At5g25370 832609 PLDALPHA3 (PHOSPHLIPASE D ALPHA 3) member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response. O.I. C.G. H.G.
976.1 100.0 233.8 At3g10680 820237 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA O.I. C.G. H.G.
958.6 100.0 183.0 At1g05610 837066 APS2 (ADP-glucose pyrophoshorylase small subunit 2) Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested. O.I. C.G. H.G.
945.4 100.0 286.9 At5g07710 830664 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP O.I. C.G. H.G.
944.1 100.0 522.9 At2g27140 817256 heat shock family protein F:molecular_function unknown;P:response to heat;C:membrane;PBOM O.I. C.G. H.G.
941.5 100.0 442.4 At1g05760 837084 RTM1 (restricted tev movement 1) Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance O.I. C.G. H.G.
922.4 100.0 261.0 At5g03510 831818 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO O.I. C.G. H.G.
916.8 100.0 265.6 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB O.I. C.G. H.G.
906.1 100.0 286.3 At5g49320 834992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
892.8 100.0 282.4 At4g35970 829751 APX5 (ASCORBATE PEROXIDASE 5) Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. O.I. C.G. H.G.
891.4 100.0 114.9 At2g34530 818016 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
883.6 100.0 393.1 At4g37445 829899 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
881.9 100.0 212.6 At5g38070 833787 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
866.3 100.0 192.9 At1g11570 837700 nuclear transport factor 2 (NTF2), putative F:protein transporter activity;P:transport, protein import into nucleus;C:nucleus, intracellular;MFPO O.I. C.G. H.G.
865.2 100.0 221.9 At1g02950 838240 ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
862.0 100.0 340.5 At1g63310 842637 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
841.2 100.0 291.0 At4g12580 826871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
832.0 100.0 310.6 At4g21310 827879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
829.5 100.0 329.7 At2g14620 815950 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
829.3 100.0 205.1 At3g18260 821354 reticulon family protein (RTNLB9) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF O.I. C.G. H.G.
818.4 100.0 107.6 At1g62400 842538 HT1 (high leaf temperature 1) F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of stomatal movement;C:unknown;MPOBFVA O.I. C.G. H.G.
807.6 100.0 424.7 At4g16400 827334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
790.0 100.0 534.1 At1g14730 838038 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF O.I. C.G. H.G.
788.8 100.0 194.8 At2g15310 816020 ATARFB1A (ADP-ribosylation factor B1A) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. O.I. C.G. H.G.
776.8 100.0 121.5 At5g04680 830346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
766.4 100.0 482.6 At5g04890 830370 RTM2 (RESTRICTED TEV MOVEMENT 2) Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs). O.I. C.G. H.G.
766.4 100.0 188.6 At4g00890 826266 proline-rich family protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
765.3 100.0 80.8 At1g11915 837741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
760.0 100.0 91.1 At5g61260 836247 chromosome scaffold protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
751.8 100.0 186.1 At1g31200 840008 ATPP2-A9 (Phloem protein 2-A9) F:carbohydrate binding;P:unknown;C:unknown;P O.I. C.G. H.G.
743.3 100.0 55.6 At4g21420 3770205 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
734.1 100.0 253.4 At5g61280 836249 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
724.1 100.0 298.1 At3g58350 825004 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
713.6 100.0 323.7 At4g33490 829486 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMF O.I. C.G. H.G.
699.8 100.0 131.2 At3g18670 821398 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPBFAV O.I. C.G. H.G.
699.7 100.0 82.1 At1g54330 841874 ANAC020 (Arabidopsis NAC domain containing protein 20) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
695.3 100.0 108.3 At2g18380 816353 transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
688.7 100.0 122.7 At5g04310 830310 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
687.6 100.0 142.2 At3g03200 821226 anac045 (Arabidopsis NAC domain containing protein 45) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB O.I. C.G. H.G.
668.2 100.0 458.3 At3g20570 821604 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV O.I. C.G. H.G.
662.1 100.0 219.3 At3g13590 820561 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO O.I. C.G. H.G.
650.5 100.0 520.1 At3g07420 819930 NS2 Encodes an asparaginyl-tRNA synthetase. O.I. C.G. H.G.
633.7 100.0 219.5 At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P O.I. C.G. H.G.
631.5 100.0 237.2 At2g41200 818719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
611.9 100.0 91.6 At4g02810 828170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
591.2 100.0 139.0 At4g18550 827587 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMV O.I. C.G. H.G.
587.1 100.0 97.2 At1g10460 837586 GLP7 (GERMIN-LIKE PROTEIN 7) germin-like protein (GLP7) O.I. C.G. H.G.
585.8 100.0 104.2 At4g36620 829814 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
578.4 100.0 282.0 At2g32280 817788 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
553.7 100.0 106.6 At5g11990 831072 proline-rich family protein F:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVA O.I. C.G. H.G.
548.8 100.0 107.6 At1g65910 842903 anac028 (Arabidopsis NAC domain containing protein 28) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
541.5 100.0 49.3 At1g75290 843866 oxidoreductase, acting on NADH or NADPH encodes a protein whose sequence is similar to an isoflavone reductase O.I. C.G. H.G.
506.3 100.0 76.2 At1g13050 837862 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOBV O.I. C.G. H.G.
485.5 100.0 65.1 At1g61830 3767602 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
482.8 100.0 104.6 At5g01480 831674 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
473.3 100.0 75.6 At3g05620 819728 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
471.5 100.0 49.9 At3g04050 819560 pyruvate kinase, putative F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
465.7 100.0 87.6 At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
465.1 100.0 231.4 At3g01670 821096 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
459.3 100.0 79.8 At4g03500 827731 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFPBVA O.I. C.G. H.G.
450.1 100.0 45.0 At1g75720 843906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
444.5 100.0 155.8 At2g15680 816061 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
428.3 100.0 146.0 At1g76040 843936 CPK29 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
427.7 100.0 269.6 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
422.3 100.0 197.1 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
420.3 100.0 172.2 At5g55400 835633 fimbrin-like protein, putative F:actin binding;P:unknown;C:vacuole;MOFPBA O.I. C.G. H.G.
415.2 100.0 86.1 At5g38770 833868 AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
408.9 100.0 161.2 At5g03530 831810 RABC2A (RAB GTPASE HOMOLOG C2A) Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes. O.I. C.G. H.G.
382.4 100.0 83.7 At5g35670 833540 iqd33 (IQ-domain 33) F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOF O.I. C.G. H.G.
379.3 100.0 299.4 At1g04780 839414 ankyrin repeat family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFBV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1752.6	100.0	112.9	At5g67550	836891	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1659.6	100.0	213.3	At4g24250	828526	MLO13 (MILDEW RESISTANCE LOCUS O 13)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
1640.5	100.0	225.4	At1g13920	837952	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
1505.7	100.0	310.9	At2g41300	818729	strictosidine synthase	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOA	O.I.	C.G.	H.G.
1402.1	100.0	399.7	At1g05770	837085	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1358.0	100.0	386.9	At5g37180	833692	SUS5	Encodes a protein with sucrose synthase activity (SUS5).	O.I.	C.G.	H.G.
1316.1	100.0	223.7	At5g48690	834927	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
1287.6	100.0	330.1	At5g56720	835773	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFA	O.I.	C.G.	H.G.
1284.6	100.0	431.5	At1g29520	839829	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
1265.8	100.0	270.6	At1g61760	842473	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1257.6	100.0	357.6	At3g15800	820823	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PO	O.I.	C.G.	H.G.
1244.2	100.0	270.2	At5g45320	834568	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1206.3	100.0	236.0	At5g20870	832210	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB	O.I.	C.G.	H.G.
1192.1	100.0	435.4	At5g48060	834858	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
1188.6	100.0	476.7	At3g01680	821097	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1180.7	100.0	368.1	At5g02140	831881	thaumatin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOV	O.I.	C.G.	H.G.
1180.0	100.0	359.8	At3g17380	821002	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
1170.5	100.0	410.3	At1g77700	844106	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOV	O.I.	C.G.	H.G.
1143.9	100.0	300.7	At5g67460	836882	glycosyl hydrolase family protein 17	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBVFM	O.I.	C.G.	H.G.
1099.7	100.0	456.7	At2g46630	3768746	unknown protein	F:unknown;P:unknown;C:chloroplast	O.I.	C.G.	H.G.
1096.1	100.0	449.5	At5g18970	832015	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
1083.6	100.0	121.8	At5g22870	832350	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1079.6	100.0	180.6	At5g67050	836840	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMV	O.I.	C.G.	H.G.
1050.9	100.0	90.3	At3g26350	822239	-	F:unknown;P:unknown;C:chloroplast;MPFOVBA	O.I.	C.G.	H.G.
1041.1	100.0	256.2	At1g06490	837160	ATGSL07 (glucan synthase-like 7)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
1035.7	100.0	95.1	At2g34540	818017	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1034.4	100.0	477.2	At1g73370	843672	SUS6 (SUCROSE SYNTHASE 6)	Encodes a protein with sucrose synthase activity (SUS6).	O.I.	C.G.	H.G.
1025.5	100.0	373.3	At4g09950	826585	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
1010.5	100.0	244.2	At3g47180	823871	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
1009.9	100.0	124.9	At4g16640	827365	matrix metalloproteinase, putative	F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA	O.I.	C.G.	H.G.
983.2	100.0	273.2	At5g25370	832609	PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)	member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.	O.I.	C.G.	H.G.
976.1	100.0	233.8	At3g10680	820237	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA	O.I.	C.G.	H.G.
958.6	100.0	183.0	At1g05610	837066	APS2 (ADP-glucose pyrophoshorylase small subunit 2)	Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.	O.I.	C.G.	H.G.
945.4	100.0	286.9	At5g07710	830664	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOP	O.I.	C.G.	H.G.
944.1	100.0	522.9	At2g27140	817256	heat shock family protein	F:molecular_function unknown;P:response to heat;C:membrane;PBOM	O.I.	C.G.	H.G.
941.5	100.0	442.4	At1g05760	837084	RTM1 (restricted tev movement 1)	Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance	O.I.	C.G.	H.G.
922.4	100.0	261.0	At5g03510	831818	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPO	O.I.	C.G.	H.G.
916.8	100.0	265.6	At2g39830	818570	DAR2 (DA1-RELATED PROTEIN 2)	F:zinc ion binding;P:unknown;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
906.1	100.0	286.3	At5g49320	834992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
892.8	100.0	282.4	At4g35970	829751	APX5 (ASCORBATE PEROXIDASE 5)	Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	O.I.	C.G.	H.G.
891.4	100.0	114.9	At2g34530	818016	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
883.6	100.0	393.1	At4g37445	829899	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
881.9	100.0	212.6	At5g38070	833787	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
866.3	100.0	192.9	At1g11570	837700	nuclear transport factor 2 (NTF2), putative	F:protein transporter activity;P:transport, protein import into nucleus;C:nucleus, intracellular;MFPO	O.I.	C.G.	H.G.
865.2	100.0	221.9	At1g02950	838240	ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
862.0	100.0	340.5	At1g63310	842637	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
841.2	100.0	291.0	At4g12580	826871	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
832.0	100.0	310.6	At4g21310	827879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
829.5	100.0	329.7	At2g14620	815950	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
829.3	100.0	205.1	At3g18260	821354	reticulon family protein (RTNLB9)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF	O.I.	C.G.	H.G.
818.4	100.0	107.6	At1g62400	842538	HT1 (high leaf temperature 1)	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of stomatal movement;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
807.6	100.0	424.7	At4g16400	827334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
790.0	100.0	534.1	At1g14730	838038	-	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF	O.I.	C.G.	H.G.
788.8	100.0	194.8	At2g15310	816020	ATARFB1A (ADP-ribosylation factor B1A)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
776.8	100.0	121.5	At5g04680	830346	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
766.4	100.0	482.6	At5g04890	830370	RTM2 (RESTRICTED TEV MOVEMENT 2)	Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).	O.I.	C.G.	H.G.
766.4	100.0	188.6	At4g00890	826266	proline-rich family protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
765.3	100.0	80.8	At1g11915	837741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
760.0	100.0	91.1	At5g61260	836247	chromosome scaffold protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
751.8	100.0	186.1	At1g31200	840008	ATPP2-A9 (Phloem protein 2-A9)	F:carbohydrate binding;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
743.3	100.0	55.6	At4g21420	3770205	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
734.1	100.0	253.4	At5g61280	836249	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
724.1	100.0	298.1	At3g58350	825004	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
713.6	100.0	323.7	At4g33490	829486	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMF	O.I.	C.G.	H.G.
699.8	100.0	131.2	At3g18670	821398	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOPBFAV	O.I.	C.G.	H.G.
699.7	100.0	82.1	At1g54330	841874	ANAC020 (Arabidopsis NAC domain containing protein 20)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
695.3	100.0	108.3	At2g18380	816353	transcription factor	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
688.7	100.0	122.7	At5g04310	830310	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
687.6	100.0	142.2	At3g03200	821226	anac045 (Arabidopsis NAC domain containing protein 45)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMB	O.I.	C.G.	H.G.
668.2	100.0	458.3	At3g20570	821604	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBFMV	O.I.	C.G.	H.G.
662.1	100.0	219.3	At3g13590	820561	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PO	O.I.	C.G.	H.G.
650.5	100.0	520.1	At3g07420	819930	NS2	Encodes an asparaginyl-tRNA synthetase.	O.I.	C.G.	H.G.
633.7	100.0	219.5	At3g20450	821590	-	F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P	O.I.	C.G.	H.G.
631.5	100.0	237.2	At2g41200	818719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
611.9	100.0	91.6	At4g02810	828170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
591.2	100.0	139.0	At4g18550	827587	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOBMV	O.I.	C.G.	H.G.
587.1	100.0	97.2	At1g10460	837586	GLP7 (GERMIN-LIKE PROTEIN 7)	germin-like protein (GLP7)	O.I.	C.G.	H.G.
585.8	100.0	104.2	At4g36620	829814	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
578.4	100.0	282.0	At2g32280	817788	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
553.7	100.0	106.6	At5g11990	831072	proline-rich family protein	F:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVA	O.I.	C.G.	H.G.
548.8	100.0	107.6	At1g65910	842903	anac028 (Arabidopsis NAC domain containing protein 28)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
541.5	100.0	49.3	At1g75290	843866	oxidoreductase, acting on NADH or NADPH	encodes a protein whose sequence is similar to an isoflavone reductase	O.I.	C.G.	H.G.
506.3	100.0	76.2	At1g13050	837862	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOBV	O.I.	C.G.	H.G.
485.5	100.0	65.1	At1g61830	3767602	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
482.8	100.0	104.6	At5g01480	831674	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
473.3	100.0	75.6	At3g05620	819728	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
471.5	100.0	49.9	At3g04050	819560	pyruvate kinase, putative	F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
465.7	100.0	87.6	At1g23530	838962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
465.1	100.0	231.4	At3g01670	821096	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
459.3	100.0	79.8	At4g03500	827731	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
450.1	100.0	45.0	At1g75720	843906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
444.5	100.0	155.8	At2g15680	816061	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
428.3	100.0	146.0	At1g76040	843936	CPK29	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
427.7	100.0	269.6	At4g18340	827561	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
422.3	100.0	197.1	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
420.3	100.0	172.2	At5g55400	835633	fimbrin-like protein, putative	F:actin binding;P:unknown;C:vacuole;MOFPBA	O.I.	C.G.	H.G.
415.2	100.0	86.1	At5g38770	833868	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
408.9	100.0	161.2	At5g03530	831810	RABC2A (RAB GTPASE HOMOLOG C2A)	Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.	O.I.	C.G.	H.G.
382.4	100.0	83.7	At5g35670	833540	iqd33 (IQ-domain 33)	F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOF	O.I.	C.G.	H.G.
379.3	100.0	299.4	At1g04780	839414	ankyrin repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFBV	O.I.	C.G.	H.G.

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GSM ID	GSM184904
Assay name	Arabidopsis, root cells, protophloem, standard conditions, replicate 1
GSE experiment	GSE7641: Expression analysis of root cell-types after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184904 Assay name Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

GSM ID GSM184904

Assay name Arabidopsis, root cells, protophloem, standard conditions, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt