Microarray experiments to specifically-expressed genes

GSM ID GSM184903
Assay name Arabidopsis, root cells, stele, standard conditions, replicate 3
GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
371.4100.0118.7At4g14940827152ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.O.I.C.G.H.G.
174.4100.058.6At1g79620844301leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
115.699.9101.3At1g23760838987JP630Encodes aromatic rich glycoprotein JP630.O.I.C.G.H.G.
99.599.993.3At4g11210826723disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
75.899.985.4At4g15290827195ATCSLB05encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
61.099.872.6At3g45700823712proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBOFO.I.C.G.H.G.
58.199.8119.2At5g01890831677leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
57.299.853.6At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
56.399.817.5At5g57770835885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
55.799.889.0At2g45750819183dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
55.299.855.0At3g56230824789speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
52.799.8134.8At4g19030827641NLM1an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
50.099.8154.9At4g35350829688XCP1 (XYLEM CYSTEINE PEPTIDASE 1)tracheary element vacuolar proteinO.I.C.G.H.G.
49.599.856.6At2g39040818490peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
48.799.815.5At2g45890819197ROPGEF4 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.C.G.H.G.
48.699.868.0At5g49270834987SHV2 (SHAVEN 2)Involved in successfully establishing tip growth in root hairs.O.I.C.G.H.G.
47.899.852.5At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.O.I.C.G.H.G.
45.699.816.3At1g73780843713protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
45.499.820.6At4g36160829773ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76)Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.O.I.C.G.H.G.
44.999.878.6At5g37540833732aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOMO.I.C.G.H.G.
44.999.827.4At1g59940842288ARR3 (RESPONSE REGULATOR 3)Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.O.I.C.G.H.G.
44.699.838.0At1g67510843072leucine-rich repeat family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
43.899.879.1At4g09990826590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
43.499.849.4At1g05650837072polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
43.299.837.0At5g03960830275IQD12 (IQ-domain 12)F:calmodulin binding;P:biological_process unknown;C:unknown;PBFOO.I.C.G.H.G.
42.299.8266.9At4g23690828469disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
41.799.836.5At4g20840827832FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:apoplast, plasma membrane;FBPOAMO.I.C.G.H.G.
41.299.887.8At1g52280841658AtRABG3d (Arabidopsis Rab GTPase homolog G3d)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAVO.I.C.G.H.G.
41.099.837.5At2g20520816574FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)fasciclin-like arabinogalactan-protein 6 (Fla6)O.I.C.G.H.G.
40.999.8140.1At1g32100840102PRR1 (PINORESINOL REDUCTASE 1)Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.O.I.C.G.H.G.
40.899.824.0At5g40630834062ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFVO.I.C.G.H.G.
40.499.873.9At3g18200821347nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMFO.I.C.G.H.G.
40.199.849.7At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
38.499.879.8At5g04960830378pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
38.499.834.7At2g04850815031auxin-responsive protein-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
38.499.834.7At5g25830832652zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
38.299.8148.2At1g77690844105LAX3 (LIKE AUX1 3)Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.O.I.C.G.H.G.
37.799.782.1At2g47540819367pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
36.899.728.9At2g38320818412unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
36.599.719.4At2g04680815011DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
36.099.716.3At3g07070819893protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
35.499.7125.6At1g78100844146F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.499.785.1At1g54970841938ATPRP1 (PROLINE-RICH PROTEIN 1)encodes a proline-rich protein that is specifically expressed in the root.O.I.C.G.H.G.
32.399.767.4At3g22830821854AT-HSFA6Bmember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
31.999.738.1At2g27740817320unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAVO.I.C.G.H.G.
31.499.741.1At5g01360830298-F:unknown;P:unknown;C:unknown;PMFO.I.C.G.H.G.
31.399.780.9At5g07110830602PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOO.I.C.G.H.G.
31.199.758.4At2g16720816173MYB7 (MYB DOMAIN PROTEIN 7)Encodes a member of MYB3R- and R2R3- type MYB- encoding genesO.I.C.G.H.G.
31.099.7214.5At1g20850838677XCP2 (xylem cysteine peptidase 2)F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAFO.I.C.G.H.G.
30.699.734.9At4g34580829610COW1 (CAN OF WORMS1)Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.O.I.C.G.H.G.
30.099.728.0At2g44110819017MLO15 (MILDEW RESISTANCE LOCUS O 15)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
29.999.7109.7At3g25900822186HMT-1F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
29.999.765.2At4g01630827983ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
29.399.718.4At1g63450842651catalyticF:catalytic activity;P:unknown;C:membrane;POMO.I.C.G.H.G.
28.399.735.2At1g32930840187galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
28.299.748.1At1g68810843213basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
28.199.716.4At1g30850839969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.999.772.0At1g48930841315AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
27.999.731.9At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
27.999.724.5At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.O.I.C.G.H.G.
27.699.717.2At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOO.I.C.G.H.G.
27.499.743.1At5g57540835858xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
27.399.764.4At2g25160817054CYP82F1member of CYP82FO.I.C.G.H.G.
27.299.738.7At4g37650829919SHR (SHORT ROOT)Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.O.I.C.G.H.G.
26.699.7145.5At4g26320828738AGP13 (arabinogalactan protein 13)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
26.699.767.1At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOO.I.C.G.H.G.
26.599.772.3At5g42590834266CYP71A16putative cytochrome P450O.I.C.G.H.G.
26.599.751.6At1g13420837902ST4B (SULFOTRANSFERASE 4B)Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.O.I.C.G.H.G.
26.499.737.8At1g58370842206RXF12Encodes a protein with xylanase activity.O.I.C.G.H.G.
26.499.713.0At2g46760819289FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMAO.I.C.G.H.G.
26.299.719.3At5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
25.899.747.6At1g50630841485unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
25.699.767.3At5g61340836255unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
25.699.717.8At1g77020844038DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
25.599.731.4At1g53830841820ATPME2encodes a pectin methylesteraseO.I.C.G.H.G.
25.499.6149.9At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
25.499.618.1At5g02640831166unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.999.638.0At1g74510843792kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
24.899.661.7At5g08370830735AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:positive regulation of flower development, leaf morphogenesis;C:plant-type cell wall;MBFOPO.I.C.G.H.G.
24.499.650.4At1g12560837813ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.O.I.C.G.H.G.
24.299.6286.0At5g05410830424DREB2AEncodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress–inducible genes.O.I.C.G.H.G.
24.199.6111.8At5g51890835264peroxidaseencodes peroxidase involved in the lignification of tracheary elements (TE) in rootsO.I.C.G.H.G.
24.199.6100.2At3g27200822339plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMFO.I.C.G.H.G.
24.099.612.1At5g23030832367TET12 (TETRASPANIN12)Member of TETRASPANIN familyO.I.C.G.H.G.
23.999.648.0At3g47400823894pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMAO.I.C.G.H.G.
23.999.614.7At2g37440818321endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
23.399.639.5At5g43890834411YUCCA5Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotypeO.I.C.G.H.G.
23.399.636.7At2g34910818056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.399.620.4At4g01140828157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
23.399.617.6At2g42850818885CYP718member of CYP718O.I.C.G.H.G.
23.299.654.7At1g69526843287UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;PBOO.I.C.G.H.G.
23.299.612.9At2g31900817748XIFEncodes an novel myosin isoform.O.I.C.G.H.G.
22.999.692.0At2g41660818764MIZ1 (mizu-kussei 1)Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.O.I.C.G.H.G.
22.899.622.1At4g17220827434ATMAP70-5 (microtubule-associated proteins 70-5)Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues.O.I.C.G.H.G.
22.799.6158.8At5g15490831402UDP-glucose 6-dehydrogenase, putativeF:in 7 functions;P:metabolic process;C:cytosol, cell wall, nucleus;OBAMPFVO.I.C.G.H.G.
22.799.631.8At1g10120837549DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
22.699.629.3At1g43020840901unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
22.399.6196.6At5g02270831709ATNAP9member of NAP subfamilyO.I.C.G.H.G.
22.299.612.2At3g08490819996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.099.628.0At4g33730829515pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.



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