Microarray experiments to specifically-expressed genes

GSM ID GSM184901
Assay name Arabidopsis, root cells, stele, standard conditions, replicate 1
GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
230.2100.0237.3At5g01890831677leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
148.299.968.2At5g25830832652zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
78.399.923.1At1g23340838943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
67.799.950.6At4g14940827152ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.O.I.C.G.H.G.
63.699.848.0At1g47410841146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
61.999.819.0At1g73780843713protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
54.899.828.4At3g42800823322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPO.I.C.G.H.G.
43.299.865.0At4g32880829424ATHB-8 (HOMEOBOX GENE 8)member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.O.I.C.G.H.G.
42.999.822.9At1g72850843616disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMFOO.I.C.G.H.G.
41.199.8146.7At2g13820815865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PFO.I.C.G.H.G.
39.099.842.2At2g27740817320unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAVO.I.C.G.H.G.
35.999.7143.7At1g77690844105LAX3 (LIKE AUX1 3)Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.O.I.C.G.H.G.
34.599.722.0At5g40630834062ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFVO.I.C.G.H.G.
33.999.753.1At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
33.699.7124.6At3g57010824868strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOAO.I.C.G.H.G.
33.499.719.5At1g10750837618unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;PFBO.I.C.G.H.G.
33.299.732.8At1g67510843072leucine-rich repeat family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
32.499.738.0At1g10120837549DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
31.899.720.5At2g37380818314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
30.899.752.3At1g23760838987JP630Encodes aromatic rich glycoprotein JP630.O.I.C.G.H.G.
30.699.751.7At4g11210826723disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
30.699.742.0At1g74510843792kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
30.299.740.9At4g37650829919SHR (SHORT ROOT)Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.O.I.C.G.H.G.
30.099.798.3At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.O.I.C.G.H.G.
30.099.719.2At1g51170841540protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MOFPBVAO.I.C.G.H.G.
29.299.7222.2At4g23690828469disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
28.999.718.4At5g23400832405disease resistance family protein / LRR family proteinF:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
28.599.7121.6At5g51890835264peroxidaseencodes peroxidase involved in the lignification of tracheary elements (TE) in rootsO.I.C.G.H.G.
27.899.7206.7At5g49460835006ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL)O.I.C.G.H.G.
26.899.7141.0At3g28860822519ABCB19Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.O.I.C.G.H.G.
26.499.713.8At2g31900817748XIFEncodes an novel myosin isoform.O.I.C.G.H.G.
26.099.774.4At2g07708815383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
25.699.7195.1At1g20850838677XCP2 (xylem cysteine peptidase 2)F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAFO.I.C.G.H.G.
25.699.727.2At3g59370825106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
24.799.641.3At3g48185823974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.799.640.3At3g26610822270polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
24.599.621.4At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
24.399.655.6At2g21050816640amino acid permease, putativeF:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMOO.I.C.G.H.G.
24.399.627.6At2g04850815031auxin-responsive protein-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
24.299.6107.3At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
24.099.637.0At2g38090818387myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOFO.I.C.G.H.G.
23.799.632.6At4g20430827791subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAMO.I.C.G.H.G.
23.199.6122.1At2g18390816354TTN5 (TITAN 5)Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.O.I.C.G.H.G.
22.999.674.2At1g61580842454RPL3B (R-PROTEIN L3 B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFVO.I.C.G.H.G.
22.199.6132.6At4g26320828738AGP13 (arabinogalactan protein 13)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
21.999.641.7At3g16200820866unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPBO.I.C.G.H.G.
21.999.631.4At3g58100824979PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.O.I.C.G.H.G.
21.999.616.5At1g77020844038DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
21.699.616.5At3g56810824848unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
21.299.651.4At5g62580836379bindingF:binding;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
21.299.636.7At1g70560843393TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.O.I.C.G.H.G.
21.199.619.5At5g60720836193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMO.I.C.G.H.G.
21.199.616.6At2g34060817967peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
20.999.6152.6At5g15490831402UDP-glucose 6-dehydrogenase, putativeF:in 7 functions;P:metabolic process;C:cytosol, cell wall, nucleus;OBAMPFVO.I.C.G.H.G.
20.799.610.6At5g57770835885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
20.599.6283.0At2g23350816867PAB4 (POLY(A) BINDING PROTEIN 4)polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed.O.I.C.G.H.G.
20.299.657.0At3g06130819786heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVAO.I.C.G.H.G.
20.199.6157.8At1g09330837454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPO.I.C.G.H.G.
19.999.697.7At4g35350829688XCP1 (XYLEM CYSTEINE PEPTIDASE 1)tracheary element vacuolar proteinO.I.C.G.H.G.
19.899.68.0At1g80100844350AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.C.G.H.G.
19.499.6317.6At5g56540835755AGP14 (ARABINOGALACTAN PROTEIN 14)Encodes arabinogalactan protein (AGP14).O.I.C.G.H.G.
19.099.5170.7At3g51670824330SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:plasma membrane;MFPOO.I.C.G.H.G.
18.399.549.1At3g56480824815myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFVO.I.C.G.H.G.
18.399.548.4At2g077163768419-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
17.999.536.9At1g03110839572transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPAO.I.C.G.H.G.
17.899.569.5At5g52180835294unknown proteinF:unknown;P:unknown;C:endomembrane system;MPOO.I.C.G.H.G.
17.899.523.7At5g03960830275IQD12 (IQ-domain 12)F:calmodulin binding;P:biological_process unknown;C:unknown;PBFOO.I.C.G.H.G.
17.599.515.8At2g37210818298-Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.O.I.C.G.H.G.
17.299.5239.3At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
17.199.538.3At4g02010827234protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
17.199.531.0At3g24660822062TMKL1 (transmembrane kinase-like 1)member of Receptor kinase-like protein familyO.I.C.G.H.G.
17.199.527.6At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
16.899.593.1At4g12080826816DNA-binding family proteinF:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBVO.I.C.G.H.G.
16.899.59.9At4g24180828519-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
16.499.529.3At1g28070839700-F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.399.5214.4At4g10840826680kinesin light chain-relatedF:binding;P:unknown;C:plasma membrane;MBOFAPVO.I.C.G.H.G.
16.399.539.6At3g47400823894pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMAO.I.C.G.H.G.
16.399.519.6At2g07680815414ATMRP11member of MRP subfamilyO.I.C.G.H.G.
16.299.529.5At5g01360830298-F:unknown;P:unknown;C:unknown;PMFO.I.C.G.H.G.
16.199.549.7At5g08370830735AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:positive regulation of flower development, leaf morphogenesis;C:plant-type cell wall;MBFOPO.I.C.G.H.G.
15.999.559.5At4g32140829346-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;OBMFPAO.I.C.G.H.G.
15.999.554.6At1g52280841658AtRABG3d (Arabidopsis Rab GTPase homolog G3d)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAVO.I.C.G.H.G.
15.899.532.1At1g71830843513SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. laterO.I.C.G.H.G.
15.899.517.7At1g69080843240universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMO.I.C.G.H.G.
15.899.514.3At5g02640831166unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.599.594.9At3g5749082491640S ribosomal protein S2 (RPS2D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFPO.I.C.G.H.G.
15.399.423.0At3g29770822677MES11 (METHYL ESTERASE 11)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
15.399.414.4At5g53290835410CRF3 (CYTOKININ RESPONSE FACTOR 3)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
15.299.447.8At2g45430819151DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMFBOO.I.C.G.H.G.
15.299.441.3At2g34710818036PHB (PHABULOSA)Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.O.I.C.G.H.G.
15.199.447.2At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.099.4238.2At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
14.999.431.2At2g01950814726BRL2 (BRI1-LIKE 2)Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.O.I.C.G.H.G.
14.999.416.5At5g35670833540iqd33 (IQ-domain 33)F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOFO.I.C.G.H.G.
14.799.480.9At4g3080082920340S ribosomal protein S11 (RPS11B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFPO.I.C.G.H.G.
14.799.434.3At3g17910821310SURF1 (SURFEIT 1)Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly.O.I.C.G.H.G.
14.699.4219.8At4g25630828668FIB2 (FIBRILLARIN 2)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.O.I.C.G.H.G.
14.699.435.3At4g16340827328SPK1 (SPIKE1)mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal ProteinO.I.C.G.H.G.
14.399.441.9At1g18640838445--O.I.C.G.H.G.
14.299.4116.9At3g17940820642aldose 1-epimerase family proteinF:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.



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