CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184895

Assay name Arabidopsis, root cells, cortex, standard conditions, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
347.5 100.0 133.2 At4g30420 829165 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM O.I. C.G. H.G.
204.1 100.0 98.8 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
189.0 100.0 48.8 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. O.I. C.G. H.G.
186.7 100.0 168.2 At2g25160 817054 CYP82F1 member of CYP82F O.I. C.G. H.G.
164.3 99.9 180.0 At5g42590 834266 CYP71A16 putative cytochrome P450 O.I. C.G. H.G.
156.8 99.9 127.2 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
155.7 99.9 44.0 At1g64920 842800 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
154.1 99.9 121.8 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
145.2 99.9 52.6 At3g55720 824738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
118.2 99.9 75.8 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM O.I. C.G. H.G.
111.6 99.9 203.1 At2g41660 818764 MIZ1 (mizu-kussei 1) Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. O.I. C.G. H.G.
108.3 99.9 42.6 At1g59940 842288 ARR3 (RESPONSE REGULATOR 3) Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. O.I. C.G. H.G.
106.8 99.9 112.5 At3g05150 819677 sugar transporter family protein F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:nucleus, membrane;BMFPOA O.I. C.G. H.G.
104.3 99.9 61.6 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
103.5 99.9 68.7 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
102.3 99.9 43.6 At5g22310 832291 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV O.I. C.G. H.G.
96.5 99.9 149.1 At2g23910 816923 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
92.3 99.9 166.5 At5g42250 834230 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.
84.7 99.9 30.7 At3g24210 822007 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
84.2 99.9 92.0 At1g13420 837902 ST4B (SULFOTRANSFERASE 4B) Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment. O.I. C.G. H.G.
81.4 99.9 63.1 At5g19340 832054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV O.I. C.G. H.G.
79.5 99.9 90.0 At1g53180 841752 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
72.9 99.9 192.9 At2g48020 819414 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, chloroplast, vacuole, membrane;BMFPOAV O.I. C.G. H.G.
68.9 99.9 118.8 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
64.0 99.8 194.6 At1g75780 843911 TUB1 beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses O.I. C.G. H.G.
63.0 99.8 36.8 At1g57560 842131 AtMYB50 (myb domain protein 50) Member of the R2R3 factor gene family. O.I. C.G. H.G.
62.0 99.8 143.8 At3g44320 823557 NIT3 (NITRILASE 3) This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways. O.I. C.G. H.G.
59.1 99.8 64.0 At2g47460 819359 MYB12 (MYB DOMAIN PROTEIN 12) "MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots. O.I. C.G. H.G.
58.9 99.8 94.8 At1g65060 842814 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. O.I. C.G. H.G.
58.8 99.8 38.6 At3g59710 825140 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
58.7 99.8 52.5 At5g01620 831716 unknown protein F:unknown;P:unknown;C:endomembrane system;PM O.I. C.G. H.G.
57.8 99.8 104.0 At1g52280 841658 AtRABG3d (Arabidopsis Rab GTPase homolog G3d) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAV O.I. C.G. H.G.
57.3 99.8 28.5 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
55.2 99.8 43.3 At1g08590 837381 CLAVATA1 receptor kinase (CLV1) similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) O.I. C.G. H.G.
53.8 99.8 72.5 At1g76470 843980 3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAV O.I. C.G. H.G.
53.4 99.8 65.4 At5g52250 835301 transducin family protein / WD-40 repeat family protein Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. O.I. C.G. H.G.
53.2 99.8 36.7 At5g25640 832640 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BPOA O.I. C.G. H.G.
53.1 99.8 105.4 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
52.8 99.8 183.4 At1g45130 841080 BGAL5 (beta-galactosidase 5) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA O.I. C.G. H.G.
52.6 99.8 14.1 At5g40090 834006 ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBM O.I. C.G. H.G.
51.9 99.8 106.3 At1g08500 837371 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
50.3 99.8 28.3 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
50.0 99.8 58.4 At2g02780 814807 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
49.4 99.8 15.6 At2g03370 814866 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBF O.I. C.G. H.G.
48.0 99.8 55.8 At5g24850 832554 CRY3 (cryptochrome 3) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome. O.I. C.G. H.G.
47.3 99.8 117.4 At1g76240 843957 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;PMO O.I. C.G. H.G.
46.7 99.8 284.7 At5g02270 831709 ATNAP9 member of NAP subfamily O.I. C.G. H.G.
45.2 99.8 36.8 At2g27000 817242 CYP705A8 member of CYP705A O.I. C.G. H.G.
44.8 99.8 77.7 At3g18200 821347 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
44.6 99.8 127.4 At2g35880 818161 - F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
44.6 99.8 42.7 At3g45070 823642 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF O.I. C.G. H.G.
44.5 99.8 140.9 At1g78100 844146 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
43.4 99.8 80.4 At5g27450 832804 MK (MEVALONATE KINASE) Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway. O.I. C.G. H.G.
43.0 99.8 26.9 At2g22930 816824 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBOF O.I. C.G. H.G.
41.8 99.8 43.1 At5g53760 835457 MLO11 (MILDEW RESISTANCE LOCUS O 11) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO11 belongs to the clade I, with AtMLO4 and AtMLO14. The gene is expressed during early seedling growth (in primary root), in root tips and lateral root primordia, and in very young leaves, and in flowers and fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
40.8 99.8 114.6 At4g03190 828045 GRH1 (GRR1-LIKE PROTEIN 1) Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. O.I. C.G. H.G.
40.0 99.8 144.3 At5g05270 830409 chalcone-flavanone isomerase family protein F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P O.I. C.G. H.G.
40.0 99.8 12.6 At5g38790 833870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
39.9 99.8 192.1 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. O.I. C.G. H.G.
39.7 99.8 32.1 At5g14020 831250 - F:unknown;P:N-terminal protein myristoylation;C:vacuole;P O.I. C.G. H.G.
39.5 99.8 107.0 At1g30130 839892 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBPF O.I. C.G. H.G.
38.6 99.8 144.6 At1g11670 837711 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:N-terminal protein myristoylation, multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
38.5 99.8 165.9 At3g09940 820155 MDHAR (MONODEHYDROASCORBATE REDUCTASE) Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica. O.I. C.G. H.G.
38.4 99.8 187.3 At1g76090 843941 SMT3 (STEROL METHYLTRANSFERASE 3) Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway. O.I. C.G. H.G.
37.5 99.7 47.3 At4g08690 826436 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:unknown;MPFO O.I. C.G. H.G.
37.2 99.7 136.3 At3g04010 819556 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB O.I. C.G. H.G.
37.0 99.7 40.6 At1g10120 837549 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
36.5 99.7 55.0 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
36.1 99.7 48.8 At3g50300 824192 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
36.0 99.7 100.8 At2g46930 819307 pectinacetylesterase, putative F:carboxylesterase activity;P:unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
35.6 99.7 80.5 At5g64330 836554 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3) Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains. O.I. C.G. H.G.
35.3 99.7 159.5 At5g65810 836710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
35.2 99.7 114.8 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
35.1 99.7 177.3 At3g09300 820086 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP O.I. C.G. H.G.
35.1 99.7 110.8 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA O.I. C.G. H.G.
34.5 99.7 106.8 At1g52910 841724 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.4 99.7 163.8 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV O.I. C.G. H.G.
34.2 99.7 78.3 At1g62800 842579 ASP4 (ASPARTATE AMINOTRANSFERASE 4) Encodes aspartate aminotransferase (Asp4). O.I. C.G. H.G.
33.9 99.7 33.6 At3g07340 819922 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFB O.I. C.G. H.G.
33.6 99.7 15.8 At2g02610 814790 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
33.5 99.7 184.3 At1g06000 837109 UDP-glucoronosyl/UDP-glucosyl transferase family protein encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols O.I. C.G. H.G.
33.5 99.7 78.7 At3g25290 822123 auxin-responsive family protein F:unknown;P:multicellular organismal development;C:plasma membrane, membrane;PFMOB O.I. C.G. H.G.
33.4 99.7 19.6 At5g05900 830475 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
33.1 99.7 44.6 At4g30900 829214 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BOFPAM O.I. C.G. H.G.
33.0 99.7 115.5 At2g29390 817488 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase. O.I. C.G. H.G.
33.0 99.7 23.5 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. O.I. C.G. H.G.
32.7 99.7 144.8 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
32.7 99.7 113.2 At1g17190 838290 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
32.6 99.7 110.3 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
32.4 99.7 113.1 At4g28040 828919 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
32.1 99.7 122.1 At1g05620 837068 URH2 (URIDINE-RIBOHYDROLASE 2) F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
32.1 99.7 18.3 At5g04330 830312 cytochrome P450, putative / ferulate-5-hydroxylase, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPFBOAV O.I. C.G. H.G.
31.8 99.7 138.4 At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
31.8 99.7 64.0 At2g47270 819340 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
31.8 99.7 23.5 At3g20130 821556 CYP705A22 member of CYP705A O.I. C.G. H.G.
31.3 99.7 16.9 At5g24100 832475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
31.2 99.7 87.6 At5g28020 832872 CYSD2 (CYSTEINE SYNTHASE D2) Encodes cysteine synthase CysD2. O.I. C.G. H.G.
30.9 99.7 111.1 At1g20190 838608 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
30.9 99.7 9.0 At1g60790 842373 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
30.7 99.7 176.8 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
347.5	100.0	133.2	At4g30420	829165	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
204.1	100.0	98.8	At3g50640	824227	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
189.0	100.0	48.8	At5g15150	831367	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.	O.I.	C.G.	H.G.
186.7	100.0	168.2	At2g25160	817054	CYP82F1	member of CYP82F	O.I.	C.G.	H.G.
164.3	99.9	180.0	At5g42590	834266	CYP71A16	putative cytochrome P450	O.I.	C.G.	H.G.
156.8	99.9	127.2	At4g22460	828341	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
155.7	99.9	44.0	At1g64920	842800	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
154.1	99.9	121.8	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
145.2	99.9	52.6	At3g55720	824738	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
118.2	99.9	75.8	At3g23470	821928	cyclopropane-fatty-acyl-phospholipid synthase	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM	O.I.	C.G.	H.G.
111.6	99.9	203.1	At2g41660	818764	MIZ1 (mizu-kussei 1)	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	O.I.	C.G.	H.G.
108.3	99.9	42.6	At1g59940	842288	ARR3 (RESPONSE REGULATOR 3)	Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	O.I.	C.G.	H.G.
106.8	99.9	112.5	At3g05150	819677	sugar transporter family protein	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:nucleus, membrane;BMFPOA	O.I.	C.G.	H.G.
104.3	99.9	61.6	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
103.5	99.9	68.7	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
102.3	99.9	43.6	At5g22310	832291	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV	O.I.	C.G.	H.G.
96.5	99.9	149.1	At2g23910	816923	cinnamoyl-CoA reductase-related	F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
92.3	99.9	166.5	At5g42250	834230	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
84.7	99.9	30.7	At3g24210	822007	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
84.2	99.9	92.0	At1g13420	837902	ST4B (SULFOTRANSFERASE 4B)	Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.	O.I.	C.G.	H.G.
81.4	99.9	63.1	At5g19340	832054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV	O.I.	C.G.	H.G.
79.5	99.9	90.0	At1g53180	841752	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
72.9	99.9	192.9	At2g48020	819414	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, chloroplast, vacuole, membrane;BMFPOAV	O.I.	C.G.	H.G.
68.9	99.9	118.8	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
64.0	99.8	194.6	At1g75780	843911	TUB1	beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses	O.I.	C.G.	H.G.
63.0	99.8	36.8	At1g57560	842131	AtMYB50 (myb domain protein 50)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
62.0	99.8	143.8	At3g44320	823557	NIT3 (NITRILASE 3)	This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.	O.I.	C.G.	H.G.
59.1	99.8	64.0	At2g47460	819359	MYB12 (MYB DOMAIN PROTEIN 12)	"MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots.	O.I.	C.G.	H.G.
58.9	99.8	94.8	At1g65060	842814	4CL3	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.	O.I.	C.G.	H.G.
58.8	99.8	38.6	At3g59710	825140	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
58.7	99.8	52.5	At5g01620	831716	unknown protein	F:unknown;P:unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
57.8	99.8	104.0	At1g52280	841658	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAV	O.I.	C.G.	H.G.
57.3	99.8	28.5	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
55.2	99.8	43.3	At1g08590	837381	CLAVATA1 receptor kinase (CLV1)	similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888)	O.I.	C.G.	H.G.
53.8	99.8	72.5	At1g76470	843980	3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase	F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAV	O.I.	C.G.	H.G.
53.4	99.8	65.4	At5g52250	835301	transducin family protein / WD-40 repeat family protein	Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.	O.I.	C.G.	H.G.
53.2	99.8	36.7	At5g25640	832640	-	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BPOA	O.I.	C.G.	H.G.
53.1	99.8	105.4	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
52.8	99.8	183.4	At1g45130	841080	BGAL5 (beta-galactosidase 5)	F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA	O.I.	C.G.	H.G.
52.6	99.8	14.1	At5g40090	834006	ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBM	O.I.	C.G.	H.G.
51.9	99.8	106.3	At1g08500	837371	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
50.3	99.8	28.3	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
50.0	99.8	58.4	At2g02780	814807	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
49.4	99.8	15.6	At2g03370	814866	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBF	O.I.	C.G.	H.G.
48.0	99.8	55.8	At5g24850	832554	CRY3 (cryptochrome 3)	Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.	O.I.	C.G.	H.G.
47.3	99.8	117.4	At1g76240	843957	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;PMO	O.I.	C.G.	H.G.
46.7	99.8	284.7	At5g02270	831709	ATNAP9	member of NAP subfamily	O.I.	C.G.	H.G.
45.2	99.8	36.8	At2g27000	817242	CYP705A8	member of CYP705A	O.I.	C.G.	H.G.
44.8	99.8	77.7	At3g18200	821347	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
44.6	99.8	127.4	At2g35880	818161	-	F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
44.6	99.8	42.7	At3g45070	823642	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	O.I.	C.G.	H.G.
44.5	99.8	140.9	At1g78100	844146	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.4	99.8	80.4	At5g27450	832804	MK (MEVALONATE KINASE)	Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.	O.I.	C.G.	H.G.
43.0	99.8	26.9	At2g22930	816824	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBOF	O.I.	C.G.	H.G.
41.8	99.8	43.1	At5g53760	835457	MLO11 (MILDEW RESISTANCE LOCUS O 11)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO11 belongs to the clade I, with AtMLO4 and AtMLO14. The gene is expressed during early seedling growth (in primary root), in root tips and lateral root primordia, and in very young leaves, and in flowers and fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
40.8	99.8	114.6	At4g03190	828045	GRH1 (GRR1-LIKE PROTEIN 1)	Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.	O.I.	C.G.	H.G.
40.0	99.8	144.3	At5g05270	830409	chalcone-flavanone isomerase family protein	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.0	99.8	12.6	At5g38790	833870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
39.9	99.8	192.1	At5g66690	836802	UGT72E2	UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.	O.I.	C.G.	H.G.
39.7	99.8	32.1	At5g14020	831250	-	F:unknown;P:N-terminal protein myristoylation;C:vacuole;P	O.I.	C.G.	H.G.
39.5	99.8	107.0	At1g30130	839892	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBPF	O.I.	C.G.	H.G.
38.6	99.8	144.6	At1g11670	837711	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:N-terminal protein myristoylation, multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
38.5	99.8	165.9	At3g09940	820155	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.	O.I.	C.G.	H.G.
38.4	99.8	187.3	At1g76090	843941	SMT3 (STEROL METHYLTRANSFERASE 3)	Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.	O.I.	C.G.	H.G.
37.5	99.7	47.3	At4g08690	826436	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	F:transporter activity;P:transport;C:unknown;MPFO	O.I.	C.G.	H.G.
37.2	99.7	136.3	At3g04010	819556	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB	O.I.	C.G.	H.G.
37.0	99.7	40.6	At1g10120	837549	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
36.5	99.7	55.0	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
36.1	99.7	48.8	At3g50300	824192	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
36.0	99.7	100.8	At2g46930	819307	pectinacetylesterase, putative	F:carboxylesterase activity;P:unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
35.6	99.7	80.5	At5g64330	836554	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains.	O.I.	C.G.	H.G.
35.3	99.7	159.5	At5g65810	836710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
35.2	99.7	114.8	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
35.1	99.7	177.3	At3g09300	820086	ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)	F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP	O.I.	C.G.	H.G.
35.1	99.7	110.8	At2g25810	817123	TIP4	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA	O.I.	C.G.	H.G.
34.5	99.7	106.8	At1g52910	841724	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.4	99.7	163.8	At1g15210	838087	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV	O.I.	C.G.	H.G.
34.2	99.7	78.3	At1g62800	842579	ASP4 (ASPARTATE AMINOTRANSFERASE 4)	Encodes aspartate aminotransferase (Asp4).	O.I.	C.G.	H.G.
33.9	99.7	33.6	At3g07340	819922	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFB	O.I.	C.G.	H.G.
33.6	99.7	15.8	At2g02610	814790	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
33.5	99.7	184.3	At1g06000	837109	UDP-glucoronosyl/UDP-glucosyl transferase family protein	encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols	O.I.	C.G.	H.G.
33.5	99.7	78.7	At3g25290	822123	auxin-responsive family protein	F:unknown;P:multicellular organismal development;C:plasma membrane, membrane;PFMOB	O.I.	C.G.	H.G.
33.4	99.7	19.6	At5g05900	830475	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
33.1	99.7	44.6	At4g30900	829214	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BOFPAM	O.I.	C.G.	H.G.
33.0	99.7	115.5	At2g29390	817488	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	O.I.	C.G.	H.G.
33.0	99.7	23.5	At1g80340	844374	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	O.I.	C.G.	H.G.
32.7	99.7	144.8	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
32.7	99.7	113.2	At1g17190	838290	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
32.6	99.7	110.3	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
32.4	99.7	113.1	At4g28040	828919	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
32.1	99.7	122.1	At1g05620	837068	URH2 (URIDINE-RIBOHYDROLASE 2)	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
32.1	99.7	18.3	At5g04330	830312	cytochrome P450, putative / ferulate-5-hydroxylase, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPFBOAV	O.I.	C.G.	H.G.
31.8	99.7	138.4	At5g12940	831134	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
31.8	99.7	64.0	At2g47270	819340	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
31.8	99.7	23.5	At3g20130	821556	CYP705A22	member of CYP705A	O.I.	C.G.	H.G.
31.3	99.7	16.9	At5g24100	832475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
31.2	99.7	87.6	At5g28020	832872	CYSD2 (CYSTEINE SYNTHASE D2)	Encodes cysteine synthase CysD2.	O.I.	C.G.	H.G.
30.9	99.7	111.1	At1g20190	838608	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
30.9	99.7	9.0	At1g60790	842373	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
30.7	99.7	176.8	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.

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GSM ID	GSM184895
Assay name	Arabidopsis, root cells, cortex, standard conditions, replicate 1
GSE experiment	GSE7641: Expression analysis of root cell-types after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184895 Assay name Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

GSM ID GSM184895

Assay name Arabidopsis, root cells, cortex, standard conditions, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt