CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184892

Assay name Arabidopsis, root cells, columella root cap, standard conditions, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
841.4 100.0 97.5 At5g57420 835848 IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33) Belongs to auxin inducible gene family. O.I. C.G. H.G.
762.7 100.0 186.9 At2g21610 816699 pectinesterase family protein F:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMO O.I. C.G. H.G.
537.7 100.0 401.7 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF O.I. C.G. H.G.
502.3 100.0 289.7 At2g04025 814929 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
479.4 100.0 300.3 At1g65570 842868 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
477.7 100.0 96.3 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
465.5 100.0 366.9 At5g66280 836760 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) GDP-D-mannose 4,6-dehydratase O.I. C.G. H.G.
451.0 100.0 77.3 At1g21340 838733 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
441.6 100.0 295.0 At4g27400 828848 late embryogenesis abundant protein-related / LEA protein-related F:unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.
427.4 100.0 75.0 At5g48130 834865 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;P O.I. C.G. H.G.
426.5 100.0 519.2 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
404.9 100.0 561.7 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA O.I. C.G. H.G.
377.2 100.0 264.7 At1g04610 839474 flavin-containing monooxygenase / FMO (YUCCA3) F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPA O.I. C.G. H.G.
374.1 100.0 523.7 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
360.3 100.0 175.5 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. C.G. H.G.
337.9 100.0 100.2 At1g07290 837240 nucleotide-sugar transmembrane transporter F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
335.3 100.0 302.3 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
313.9 100.0 88.6 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF O.I. C.G. H.G.
308.7 100.0 88.0 At1g04180 837024 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA O.I. C.G. H.G.
280.7 100.0 81.0 At1g26680 839209 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBM O.I. C.G. H.G.
259.9 100.0 72.3 At2g28870 817436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
242.2 100.0 87.9 At1g44318 841025 hemb2 F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAP O.I. C.G. H.G.
239.8 100.0 130.0 At5g57500 835854 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF O.I. C.G. H.G.
231.4 100.0 233.4 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
231.2 100.0 91.4 At1g48070 841225 - F:molecular_function unknown;P:cell redox homeostasis;C:cellular_component unknown;BPO O.I. C.G. H.G.
229.3 100.0 59.6 At1g12600 837816 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA O.I. C.G. H.G.
222.7 100.0 343.4 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P O.I. C.G. H.G.
222.3 100.0 80.1 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF O.I. C.G. H.G.
222.0 100.0 48.0 At5g39820 833978 anac094 (Arabidopsis NAC domain containing protein 94) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
215.6 100.0 68.5 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
196.3 100.0 51.0 At3g55550 824720 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
191.0 100.0 56.5 At1g59940 842288 ARR3 (RESPONSE REGULATOR 3) Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. O.I. C.G. H.G.
190.0 100.0 46.6 At1g65620 842873 AS2 (ASYMMETRIC LEAVES 2) required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP. O.I. C.G. H.G.
187.6 100.0 69.9 At5g14020 831250 - F:unknown;P:N-terminal protein myristoylation;C:vacuole;P O.I. C.G. H.G.
186.9 100.0 279.1 At3g27200 822339 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF O.I. C.G. H.G.
186.6 100.0 55.5 At5g51520 835226 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
183.7 100.0 69.3 At1g33280 840223 ANAC015 (Arabidopsis NAC domain containing protein 15) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
183.6 100.0 226.0 At5g09960 830857 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
182.7 100.0 83.7 At4g23590 828459 aminotransferase class I and II family protein F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
166.5 100.0 93.0 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family O.I. C.G. H.G.
166.2 100.0 258.3 At4g00080 828192 UNE11 (unfertilized embryo sac 11) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;P O.I. C.G. H.G.
163.8 99.9 90.8 At3g55180 824684 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOPMFVA O.I. C.G. H.G.
162.3 99.9 290.1 At5g51890 835264 peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots O.I. C.G. H.G.
156.9 99.9 128.4 At3g27880 822408 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
155.0 99.9 141.3 At1g23210 838930 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
152.7 99.9 409.4 At5g01040 831877 LAC8 (laccase 8) putative laccase, knockout mutant showed early flowering O.I. C.G. H.G.
151.8 99.9 32.1 At3g62320 825405 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
151.7 99.9 54.3 At3g01840 820047 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVA O.I. C.G. H.G.
150.9 99.9 188.3 At3g07410 819929 AtRABA5b (Arabidopsis Rab GTPase homolog A5b) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. C.G. H.G.
148.7 99.9 48.9 At2g43480 818949 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
147.5 99.9 53.6 At4g01240 827909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
143.4 99.9 213.0 At2g45400 819146 BEN1 involved in the regulation of brassinosteroid metabolic pathway O.I. C.G. H.G.
142.9 99.9 92.4 At4g28720 828993 flavin-containing monooxygenase family protein / FMO family protein F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA O.I. C.G. H.G.
139.0 99.9 263.8 At4g17490 827463 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
138.3 99.9 23.4 At5g58580 835972 ATL63 (ARABIDOPSIS TÓ F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
135.4 99.9 93.5 At2g39040 818490 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
134.0 99.9 40.6 At5g02070 831776 protein kinase-related F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
133.5 99.9 636.3 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
133.3 99.9 66.0 At4g19460 827687 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
131.5 99.9 80.9 At5g15160 831368 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;P O.I. C.G. H.G.
131.0 99.9 86.1 At1g08350 837355 endomembrane protein 70 family protein F:SNAP receptor activity;P:membrane fusion;C:integral to membrane, phragmoplast;MPOF O.I. C.G. H.G.
130.4 99.9 23.8 At1g72490 843581 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
127.2 99.9 22.4 At2g33230 817885 flavin-containing monooxygenase, putative / FMO, putative F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA O.I. C.G. H.G.
127.1 99.9 53.3 At2g31940 817752 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
126.7 99.9 145.3 At3g18230 821351 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:unknown;P:unknown;C:cytosol, nucleus;MOFPBVA O.I. C.G. H.G.
123.2 99.9 201.9 At1g52910 841724 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
118.4 99.9 149.8 At4g37160 829870 sks15 (SKU5 Similar 15) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
114.8 99.9 33.2 At5g55950 835693 transporter-related F:unknown;P:N-terminal protein myristoylation;C:membrane;PMFOBA O.I. C.G. H.G.
112.2 99.9 56.5 At1g78120 844148 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:mitochondrion;MOBFPA O.I. C.G. H.G.
111.2 99.9 431.2 At2g36950 818269 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV O.I. C.G. H.G.
109.8 99.9 145.2 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
108.8 99.9 56.6 At1g56680 842124 glycoside hydrolase family 19 protein F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
108.3 99.9 145.0 At4g38410 829998 dehydrin, putative F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
107.5 99.9 45.6 At4g11350 826737 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
106.0 99.9 225.6 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein O.I. C.G. H.G.
103.8 99.9 207.7 At3g19580 821495 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2) Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
102.1 99.9 23.6 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. C.G. H.G.
101.8 99.9 44.4 At4g37940 829950 AGL21 encodes a MADS box protein, highly expressed in the root. O.I. C.G. H.G.
101.7 99.9 109.2 At2g01300 814658 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
101.4 99.9 57.8 At1g53700 841807 WAG1 (WAG 1) The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. O.I. C.G. H.G.
97.8 99.9 91.5 At5g40020 833999 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO O.I. C.G. H.G.
94.1 99.9 64.6 At1g10560 837597 PUB18 (PLANT U-BOX 18) Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. O.I. C.G. H.G.
92.3 99.9 27.0 At2g46850 819298 ATP binding / protein kinase/ protein tyrosine kinase F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOFBV O.I. C.G. H.G.
91.8 99.9 466.4 At1g76600 843993 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P O.I. C.G. H.G.
90.5 99.9 46.4 At5g01930 831699 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA O.I. C.G. H.G.
90.4 99.9 42.2 At5g38610 833851 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
89.4 99.9 40.1 At5g60720 836193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. C.G. H.G.
88.2 99.9 202.7 At5g19110 832031 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
87.0 99.9 29.8 At1g10530 837594 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
85.5 99.9 146.1 At4g28290 828944 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
81.7 99.9 148.4 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
80.5 99.9 32.9 At1g10810 837624 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
79.2 99.9 26.3 At5g22550 832317 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
76.5 99.9 291.6 At5g15490 831402 UDP-glucose 6-dehydrogenase, putative F:in 7 functions;P:metabolic process;C:cytosol, cell wall, nucleus;OBAMPFV O.I. C.G. H.G.
75.0 99.9 58.5 At2g27740 817320 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAV O.I. C.G. H.G.
74.1 99.9 360.4 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
74.0 99.9 429.3 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
73.9 99.9 62.4 At1g80110 844351 ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11) F:carbohydrate binding;P:unknown;C:nucleus;P O.I. C.G. H.G.
73.4 99.9 40.8 At1g26870 837796 FEZ (FEZ) F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;P O.I. C.G. H.G.
73.0 99.9 56.9 At1g36060 840510 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
841.4	100.0	97.5	At5g57420	835848	IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33)	Belongs to auxin inducible gene family.	O.I.	C.G.	H.G.
762.7	100.0	186.9	At2g21610	816699	pectinesterase family protein	F:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMO	O.I.	C.G.	H.G.
537.7	100.0	401.7	At4g34970	829649	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	F:actin binding;P:biological_process unknown;C:intracellular;MPOF	O.I.	C.G.	H.G.
502.3	100.0	289.7	At2g04025	814929	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
479.4	100.0	300.3	At1g65570	842868	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
477.7	100.0	96.3	At2g40470	818641	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
465.5	100.0	366.9	At5g66280	836760	GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)	GDP-D-mannose 4,6-dehydratase	O.I.	C.G.	H.G.
451.0	100.0	77.3	At1g21340	838733	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
441.6	100.0	295.0	At4g27400	828848	late embryogenesis abundant protein-related / LEA protein-related	F:unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.
427.4	100.0	75.0	At5g48130	834865	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;P	O.I.	C.G.	H.G.
426.5	100.0	519.2	At1g22880	838893	CEL5 (CELLULASE 5)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
404.9	100.0	561.7	At3g19430	821477	late embryogenesis abundant protein-related / LEA protein-related	F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA	O.I.	C.G.	H.G.
377.2	100.0	264.7	At1g04610	839474	flavin-containing monooxygenase / FMO (YUCCA3)	F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPA	O.I.	C.G.	H.G.
374.1	100.0	523.7	At1g50060	841430	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
360.3	100.0	175.5	At4g26880	828795	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM	O.I.	C.G.	H.G.
337.9	100.0	100.2	At1g07290	837240	nucleotide-sugar transmembrane transporter	F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
335.3	100.0	302.3	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
313.9	100.0	88.6	At5g51470	835221	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
308.7	100.0	88.0	At1g04180	837024	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA	O.I.	C.G.	H.G.
280.7	100.0	81.0	At1g26680	839209	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBM	O.I.	C.G.	H.G.
259.9	100.0	72.3	At2g28870	817436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
242.2	100.0	87.9	At1g44318	841025	hemb2	F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAP	O.I.	C.G.	H.G.
239.8	100.0	130.0	At5g57500	835854	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOF	O.I.	C.G.	H.G.
231.4	100.0	233.4	At5g60520	836173	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
231.2	100.0	91.4	At1g48070	841225	-	F:molecular_function unknown;P:cell redox homeostasis;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
229.3	100.0	59.6	At1g12600	837816	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA	O.I.	C.G.	H.G.
222.7	100.0	343.4	At5g10130	830877	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P	O.I.	C.G.	H.G.
222.3	100.0	80.1	At1g23160	838924	auxin-responsive GH3 family protein	F:unknown;P:response to auxin stimulus;C:unknown;OPBMF	O.I.	C.G.	H.G.
222.0	100.0	48.0	At5g39820	833978	anac094 (Arabidopsis NAC domain containing protein 94)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
215.6	100.0	68.5	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
196.3	100.0	51.0	At3g55550	824720	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
191.0	100.0	56.5	At1g59940	842288	ARR3 (RESPONSE REGULATOR 3)	Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	O.I.	C.G.	H.G.
190.0	100.0	46.6	At1g65620	842873	AS2 (ASYMMETRIC LEAVES 2)	required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	O.I.	C.G.	H.G.
187.6	100.0	69.9	At5g14020	831250	-	F:unknown;P:N-terminal protein myristoylation;C:vacuole;P	O.I.	C.G.	H.G.
186.9	100.0	279.1	At3g27200	822339	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF	O.I.	C.G.	H.G.
186.6	100.0	55.5	At5g51520	835226	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
183.7	100.0	69.3	At1g33280	840223	ANAC015 (Arabidopsis NAC domain containing protein 15)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
183.6	100.0	226.0	At5g09960	830857	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
182.7	100.0	83.7	At4g23590	828459	aminotransferase class I and II family protein	F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
166.5	100.0	93.0	At1g14080	837968	FUT6 (FUCOSYLTRANSFERASE 6)	member of Xyloglucan fucosyltransferase family	O.I.	C.G.	H.G.
166.2	100.0	258.3	At4g00080	828192	UNE11 (unfertilized embryo sac 11)	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;P	O.I.	C.G.	H.G.
163.8	99.9	90.8	At3g55180	824684	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOPMFVA	O.I.	C.G.	H.G.
162.3	99.9	290.1	At5g51890	835264	peroxidase	encodes peroxidase involved in the lignification of tracheary elements (TE) in roots	O.I.	C.G.	H.G.
156.9	99.9	128.4	At3g27880	822408	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
155.0	99.9	141.3	At1g23210	838930	AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
152.7	99.9	409.4	At5g01040	831877	LAC8 (laccase 8)	putative laccase, knockout mutant showed early flowering	O.I.	C.G.	H.G.
151.8	99.9	32.1	At3g62320	825405	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
151.7	99.9	54.3	At3g01840	820047	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVA	O.I.	C.G.	H.G.
150.9	99.9	188.3	At3g07410	819929	AtRABA5b (Arabidopsis Rab GTPase homolog A5b)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
148.7	99.9	48.9	At2g43480	818949	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
147.5	99.9	53.6	At4g01240	827909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
143.4	99.9	213.0	At2g45400	819146	BEN1	involved in the regulation of brassinosteroid metabolic pathway	O.I.	C.G.	H.G.
142.9	99.9	92.4	At4g28720	828993	flavin-containing monooxygenase family protein / FMO family protein	F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA	O.I.	C.G.	H.G.
139.0	99.9	263.8	At4g17490	827463	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
138.3	99.9	23.4	At5g58580	835972	ATL63 (ARABIDOPSIS TÓ	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
135.4	99.9	93.5	At2g39040	818490	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
134.0	99.9	40.6	At5g02070	831776	protein kinase-related	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
133.5	99.9	636.3	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
133.3	99.9	66.0	At4g19460	827687	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
131.5	99.9	80.9	At5g15160	831368	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;P	O.I.	C.G.	H.G.
131.0	99.9	86.1	At1g08350	837355	endomembrane protein 70 family protein	F:SNAP receptor activity;P:membrane fusion;C:integral to membrane, phragmoplast;MPOF	O.I.	C.G.	H.G.
130.4	99.9	23.8	At1g72490	843581	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
127.2	99.9	22.4	At2g33230	817885	flavin-containing monooxygenase, putative / FMO, putative	F:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPA	O.I.	C.G.	H.G.
127.1	99.9	53.3	At2g31940	817752	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
126.7	99.9	145.3	At3g18230	821351	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	F:unknown;P:unknown;C:cytosol, nucleus;MOFPBVA	O.I.	C.G.	H.G.
123.2	99.9	201.9	At1g52910	841724	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
118.4	99.9	149.8	At4g37160	829870	sks15 (SKU5 Similar 15)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
114.8	99.9	33.2	At5g55950	835693	transporter-related	F:unknown;P:N-terminal protein myristoylation;C:membrane;PMFOBA	O.I.	C.G.	H.G.
112.2	99.9	56.5	At1g78120	844148	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:unknown;C:mitochondrion;MOBFPA	O.I.	C.G.	H.G.
111.2	99.9	431.2	At2g36950	818269	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV	O.I.	C.G.	H.G.
109.8	99.9	145.2	At3g04320	819587	endopeptidase inhibitor	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
108.8	99.9	56.6	At1g56680	842124	glycoside hydrolase family 19 protein	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
108.3	99.9	145.0	At4g38410	829998	dehydrin, putative	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
107.5	99.9	45.6	At4g11350	826737	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
106.0	99.9	225.6	At4g35350	829688	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	tracheary element vacuolar protein	O.I.	C.G.	H.G.
103.8	99.9	207.7	At3g19580	821495	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
102.1	99.9	23.6	At1g50720	841494	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM	O.I.	C.G.	H.G.
101.8	99.9	44.4	At4g37940	829950	AGL21	encodes a MADS box protein, highly expressed in the root.	O.I.	C.G.	H.G.
101.7	99.9	109.2	At2g01300	814658	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
101.4	99.9	57.8	At1g53700	841807	WAG1 (WAG 1)	The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	O.I.	C.G.	H.G.
97.8	99.9	91.5	At5g40020	833999	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO	O.I.	C.G.	H.G.
94.1	99.9	64.6	At1g10560	837597	PUB18 (PLANT U-BOX 18)	Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	O.I.	C.G.	H.G.
92.3	99.9	27.0	At2g46850	819298	ATP binding / protein kinase/ protein tyrosine kinase	F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
91.8	99.9	466.4	At1g76600	843993	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P	O.I.	C.G.	H.G.
90.5	99.9	46.4	At5g01930	831699	(1-4)-beta-mannan endohydrolase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA	O.I.	C.G.	H.G.
90.4	99.9	42.2	At5g38610	833851	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
89.4	99.9	40.1	At5g60720	836193	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM	O.I.	C.G.	H.G.
88.2	99.9	202.7	At5g19110	832031	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
87.0	99.9	29.8	At1g10530	837594	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
85.5	99.9	146.1	At4g28290	828944	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
81.7	99.9	148.4	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
80.5	99.9	32.9	At1g10810	837624	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
79.2	99.9	26.3	At5g22550	832317	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
76.5	99.9	291.6	At5g15490	831402	UDP-glucose 6-dehydrogenase, putative	F:in 7 functions;P:metabolic process;C:cytosol, cell wall, nucleus;OBAMPFV	O.I.	C.G.	H.G.
75.0	99.9	58.5	At2g27740	817320	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAV	O.I.	C.G.	H.G.
74.1	99.9	360.4	At1g52070	841636	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
74.0	99.9	429.3	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
73.9	99.9	62.4	At1g80110	844351	ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11)	F:carbohydrate binding;P:unknown;C:nucleus;P	O.I.	C.G.	H.G.
73.4	99.9	40.8	At1g26870	837796	FEZ (FEZ)	F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;P	O.I.	C.G.	H.G.
73.0	99.9	56.9	At1g36060	840510	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.

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GSM ID	GSM184892
Assay name	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1
GSE experiment	GSE7641: Expression analysis of root cell-types after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184892 Assay name Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt

GSM ID GSM184892

Assay name Arabidopsis, root cells, columella root cap, standard conditions, replicate 1

GSE experiment GSE7641: Expression analysis of root cell-types after treatment with salt