CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184836

Assay name Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6

GSE experiment GSE7639: Expression analysis of root developmental zones after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
224.8 100.0 58.5 At5g15890 831446 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFOVBA O.I. C.G. H.G.
160.7 99.9 78.9 At1g53830 841820 ATPME2 encodes a pectin methylesterase O.I. C.G. H.G.
160.3 99.9 150.4 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
154.0 99.9 93.0 At1g05650 837072 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
139.5 99.9 59.7 At4g31470 829274 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
138.7 99.9 50.2 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
136.0 99.9 225.6 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
133.6 99.9 47.4 At5g66815 836815 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
131.6 99.9 116.5 At4g31320 829259 auxin-responsive protein, putative / small auxin up RNA (SAUR_C) F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
126.4 99.9 109.7 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. O.I. C.G. H.G.
116.0 99.9 63.2 At2g18800 816395 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
105.9 99.9 137.5 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
99.7 99.9 119.4 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
99.6 99.9 39.8 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
81.7 99.9 164.2 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
81.6 99.9 107.6 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
80.3 99.9 26.9 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
79.8 99.9 28.7 At2g04680 815011 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
75.0 99.9 162.1 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA O.I. C.G. H.G.
69.5 99.9 16.5 At5g38790 833870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
68.9 99.9 96.5 At3g18200 821347 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
67.5 99.8 58.9 At4g25250 828628 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
67.3 99.8 37.4 At5g54020 835485 zinc ion binding F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.
64.7 99.8 60.6 At2g41970 818797 protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
64.5 99.8 90.3 At5g03160 831917 ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. O.I. C.G. H.G.
63.1 99.8 100.7 At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV O.I. C.G. H.G.
62.7 99.8 26.4 At1g49030 841326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
62.3 99.8 42.4 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
62.2 99.8 278.8 At3g54960 824661 ATPDIL1-3 (PDI-LIKE 1-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.
61.9 99.8 216.3 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
61.8 99.8 94.2 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA O.I. C.G. H.G.
59.6 99.8 18.3 At4g13440 826976 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
58.9 99.8 95.3 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
58.7 99.8 81.3 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
58.5 99.8 215.5 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
58.4 99.8 41.5 At1g07795 837294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.4 99.8 82.9 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
55.6 99.8 60.2 At3g22540 821825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.7 99.8 20.1 At3g07070 819893 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
54.0 99.8 59.0 At2g39040 818490 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
52.6 99.8 131.9 At5g39340 833930 AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
52.3 99.8 24.7 At1g63450 842651 catalytic F:catalytic activity;P:unknown;C:membrane;POM O.I. C.G. H.G.
50.1 99.8 107.6 At2g24040 816938 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO O.I. C.G. H.G.
47.5 99.8 95.0 At4g29520 829073 - F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA O.I. C.G. H.G.
46.9 99.8 14.0 At1g48640 841286 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
46.3 99.8 41.3 At5g04820 830361 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
45.9 99.8 98.0 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
44.8 99.8 132.7 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
44.7 99.8 96.3 At5g12880 831128 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.3 99.8 113.4 At5g05500 830433 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.2 99.8 40.1 At1g15640 838134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
43.2 99.8 67.1 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. O.I. C.G. H.G.
42.1 99.8 39.1 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
41.5 99.8 156.2 At2g39530 818538 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;P O.I. C.G. H.G.
41.3 99.8 19.4 At5g24100 832475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
39.5 99.8 160.7 At2g46140 819221 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy, response to desiccation;C:plasma membrane;PBO O.I. C.G. H.G.
38.7 99.8 110.7 At2g45400 819146 BEN1 involved in the regulation of brassinosteroid metabolic pathway O.I. C.G. H.G.
38.2 99.8 25.0 At1g61840 842481 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
37.8 99.8 15.4 At3g19320 821466 leucine-rich repeat family protein F:protein binding;P:unknown;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
37.7 99.7 137.2 At3g04010 819556 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB O.I. C.G. H.G.
37.5 99.7 18.0 At2g18450 816359 SDH1-2 Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex . O.I. C.G. H.G.
37.3 99.7 42.4 At4g37400 829894 CYP81F3 member of CYP81F O.I. C.G. H.G.
37.2 99.7 37.1 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM O.I. C.G. H.G.
36.9 99.7 125.5 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
36.1 99.7 67.5 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA O.I. C.G. H.G.
35.9 99.7 14.8 At5g23030 832367 TET12 (TETRASPANIN12) Member of TETRASPANIN family O.I. C.G. H.G.
34.4 99.7 69.9 At2g45750 819183 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
34.4 99.7 54.8 At5g13910 831238 LEP (LEAFY PETIOLE) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination. O.I. C.G. H.G.
34.2 99.7 86.3 At1g08500 837371 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
33.8 99.7 328.8 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
33.8 99.7 26.2 At5g37550 833733 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.7 99.7 180.3 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
33.7 99.7 162.4 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
33.3 99.7 110.8 At2g41660 818764 MIZ1 (mizu-kussei 1) Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. O.I. C.G. H.G.
33.3 99.7 17.4 At1g52660 841698 ATP binding F:ATP binding;P:defense response, apoptosis;C:unknown;PBOAM O.I. C.G. H.G.
33.1 99.7 24.2 At3g07900 819981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
31.8 99.7 41.7 At3g56230 824789 speckle-type POZ protein-related F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
31.7 99.7 31.1 At1g70990 843438 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVA O.I. C.G. H.G.
31.6 99.7 229.5 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. O.I. C.G. H.G.
31.0 99.7 212.8 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
30.8 99.7 103.8 At3g06300 819804 AT-P4H-2 (A. THALIANA P4H ISOFORM 2) Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins. O.I. C.G. H.G.
30.4 99.7 41.9 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.1 99.7 21.2 At1g69240 843255 MES15 (METHYL ESTERASE 15) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. O.I. C.G. H.G.
29.1 99.7 70.6 At2g24170 816951 endomembrane protein 70, putative F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB O.I. C.G. H.G.
28.9 99.7 54.4 At4g18430 827574 AtRABA1e (Arabidopsis Rab GTPase homolog A1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAV O.I. C.G. H.G.
28.9 99.7 16.6 At1g30850 839969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.8 99.7 9.8 At2g02620 814791 DC1 domain-containing protein / PHD finger protein-related F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM O.I. C.G. H.G.
28.7 99.7 52.5 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
28.6 99.7 23.1 At5g22310 832291 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV O.I. C.G. H.G.
28.5 99.7 149.1 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV O.I. C.G. H.G.
28.4 99.7 274.9 At5g65390 836664 AGP7 F:unknown;P:unknown;C:anchored to membrane;BMOPFVA O.I. C.G. H.G.
28.4 99.7 96.9 At5g54860 835577 integral membrane transporter family protein F:transporter activity;P:transport;C:endomembrane system, membrane;OPBMAF O.I. C.G. H.G.
28.3 99.7 158.3 At1g30870 839971 cationic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
27.7 99.7 27.7 At4g27480 828857 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process, N-terminal protein myristoylation;C:endomembrane system, membrane;MPBVO O.I. C.G. H.G.
27.4 99.7 51.4 At4g15290 827195 ATCSLB05 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
27.3 99.7 35.3 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
27.0 99.7 74.6 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA O.I. C.G. H.G.
26.7 99.7 278.0 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
26.4 99.7 50.5 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. O.I. C.G. H.G.
26.0 99.7 46.7 At1g65610 842872 KOR2 F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
224.8	100.0	58.5	At5g15890	831446	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PMFOVBA	O.I.	C.G.	H.G.
160.7	99.9	78.9	At1g53830	841820	ATPME2	encodes a pectin methylesterase	O.I.	C.G.	H.G.
160.3	99.9	150.4	At1g01750	839281	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
154.0	99.9	93.0	At1g05650	837072	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
139.5	99.9	59.7	At4g31470	829274	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
138.7	99.9	50.2	At1g27140	839603	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
136.0	99.9	225.6	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
133.6	99.9	47.4	At5g66815	836815	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
131.6	99.9	116.5	At4g31320	829259	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
126.4	99.9	109.7	At5g49270	834987	SHV2 (SHAVEN 2)	Involved in successfully establishing tip growth in root hairs.	O.I.	C.G.	H.G.
116.0	99.9	63.2	At2g18800	816395	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
105.9	99.9	137.5	At2g47540	819367	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
99.7	99.9	119.4	At4g09990	826590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
99.6	99.9	39.8	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
81.7	99.9	164.2	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
81.6	99.9	107.6	At4g01630	827983	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
80.3	99.9	26.9	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
79.8	99.9	28.7	At2g04680	815011	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
75.0	99.9	162.1	At2g25810	817123	TIP4	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA	O.I.	C.G.	H.G.
69.5	99.9	16.5	At5g38790	833870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
68.9	99.9	96.5	At3g18200	821347	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
67.5	99.8	58.9	At4g25250	828628	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
67.3	99.8	37.4	At5g54020	835485	zinc ion binding	F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.
64.7	99.8	60.6	At2g41970	818797	protein kinase, putative	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
64.5	99.8	90.3	At5g03160	831917	ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK)	J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.	O.I.	C.G.	H.G.
63.1	99.8	100.7	At5g01320	830867	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV	O.I.	C.G.	H.G.
62.7	99.8	26.4	At1g49030	841326	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
62.3	99.8	42.4	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
62.2	99.8	278.8	At3g54960	824661	ATPDIL1-3 (PDI-LIKE 1-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.
61.9	99.8	216.3	At1g67330	843054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
61.8	99.8	94.2	At3g28550	822485	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA	O.I.	C.G.	H.G.
59.6	99.8	18.3	At4g13440	826976	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
58.9	99.8	95.3	At3g24670	822063	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
58.7	99.8	81.3	At4g00680	828037	ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
58.5	99.8	215.5	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
58.4	99.8	41.5	At1g07795	837294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.4	99.8	82.9	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
55.6	99.8	60.2	At3g22540	821825	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.7	99.8	20.1	At3g07070	819893	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
54.0	99.8	59.0	At2g39040	818490	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
52.6	99.8	131.9	At5g39340	833930	AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)	Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
52.3	99.8	24.7	At1g63450	842651	catalytic	F:catalytic activity;P:unknown;C:membrane;POM	O.I.	C.G.	H.G.
50.1	99.8	107.6	At2g24040	816938	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;PFBMO	O.I.	C.G.	H.G.
47.5	99.8	95.0	At4g29520	829073	-	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA	O.I.	C.G.	H.G.
46.9	99.8	14.0	At1g48640	841286	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
46.3	99.8	41.3	At5g04820	830361	OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
45.9	99.8	98.0	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
44.8	99.8	132.7	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
44.7	99.8	96.3	At5g12880	831128	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.3	99.8	113.4	At5g05500	830433	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.2	99.8	40.1	At1g15640	838134	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.2	99.8	67.1	At1g12560	837813	ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.	O.I.	C.G.	H.G.
42.1	99.8	39.1	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
41.5	99.8	156.2	At2g39530	818538	integral membrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	O.I.	C.G.	H.G.
41.3	99.8	19.4	At5g24100	832475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
39.5	99.8	160.7	At2g46140	819221	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy, response to desiccation;C:plasma membrane;PBO	O.I.	C.G.	H.G.
38.7	99.8	110.7	At2g45400	819146	BEN1	involved in the regulation of brassinosteroid metabolic pathway	O.I.	C.G.	H.G.
38.2	99.8	25.0	At1g61840	842481	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
37.8	99.8	15.4	At3g19320	821466	leucine-rich repeat family protein	F:protein binding;P:unknown;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
37.7	99.7	137.2	At3g04010	819556	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB	O.I.	C.G.	H.G.
37.5	99.7	18.0	At2g18450	816359	SDH1-2	Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex .	O.I.	C.G.	H.G.
37.3	99.7	42.4	At4g37400	829894	CYP81F3	member of CYP81F	O.I.	C.G.	H.G.
37.2	99.7	37.1	At3g49840	824146	unknown protein	F:unknown;P:unknown;C:endomembrane system;PBM	O.I.	C.G.	H.G.
36.9	99.7	125.5	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
36.1	99.7	67.5	At3g05920	819761	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA	O.I.	C.G.	H.G.
35.9	99.7	14.8	At5g23030	832367	TET12 (TETRASPANIN12)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
34.4	99.7	69.9	At2g45750	819183	dehydration-responsive family protein	F:unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
34.4	99.7	54.8	At5g13910	831238	LEP (LEAFY PETIOLE)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.	O.I.	C.G.	H.G.
34.2	99.7	86.3	At1g08500	837371	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
33.8	99.7	328.8	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
33.8	99.7	26.2	At5g37550	833733	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.7	99.7	180.3	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
33.7	99.7	162.4	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
33.3	99.7	110.8	At2g41660	818764	MIZ1 (mizu-kussei 1)	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	O.I.	C.G.	H.G.
33.3	99.7	17.4	At1g52660	841698	ATP binding	F:ATP binding;P:defense response, apoptosis;C:unknown;PBOAM	O.I.	C.G.	H.G.
33.1	99.7	24.2	At3g07900	819981	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
31.8	99.7	41.7	At3g56230	824789	speckle-type POZ protein-related	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
31.7	99.7	31.1	At1g70990	843438	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVA	O.I.	C.G.	H.G.
31.6	99.7	229.5	At1g05260	837028	RCI3 (RARE COLD INDUCIBLE GENE 3)	Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.	O.I.	C.G.	H.G.
31.0	99.7	212.8	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
30.8	99.7	103.8	At3g06300	819804	AT-P4H-2 (A. THALIANA P4H ISOFORM 2)	Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.	O.I.	C.G.	H.G.
30.4	99.7	41.9	At2g34910	818056	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.1	99.7	21.2	At1g69240	843255	MES15 (METHYL ESTERASE 15)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	O.I.	C.G.	H.G.
29.1	99.7	70.6	At2g24170	816951	endomembrane protein 70, putative	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB	O.I.	C.G.	H.G.
28.9	99.7	54.4	At4g18430	827574	AtRABA1e (Arabidopsis Rab GTPase homolog A1e)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAV	O.I.	C.G.	H.G.
28.9	99.7	16.6	At1g30850	839969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.8	99.7	9.8	At2g02620	814791	DC1 domain-containing protein / PHD finger protein-related	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM	O.I.	C.G.	H.G.
28.7	99.7	52.5	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
28.6	99.7	23.1	At5g22310	832291	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV	O.I.	C.G.	H.G.
28.5	99.7	149.1	At1g15210	838087	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV	O.I.	C.G.	H.G.
28.4	99.7	274.9	At5g65390	836664	AGP7	F:unknown;P:unknown;C:anchored to membrane;BMOPFVA	O.I.	C.G.	H.G.
28.4	99.7	96.9	At5g54860	835577	integral membrane transporter family protein	F:transporter activity;P:transport;C:endomembrane system, membrane;OPBMAF	O.I.	C.G.	H.G.
28.3	99.7	158.3	At1g30870	839971	cationic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
27.7	99.7	27.7	At4g27480	828857	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process, N-terminal protein myristoylation;C:endomembrane system, membrane;MPBVO	O.I.	C.G.	H.G.
27.4	99.7	51.4	At4g15290	827195	ATCSLB05	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
27.3	99.7	35.3	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
27.0	99.7	74.6	At5g40510	834049	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA	O.I.	C.G.	H.G.
26.7	99.7	278.0	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
26.4	99.7	50.5	At5g51060	835179	RHD2 (ROOT HAIR DEFECTIVE 2)	RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.	O.I.	C.G.	H.G.
26.0	99.7	46.7	At1g65610	842872	KOR2	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.

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GSM ID	GSM184836
Assay name	Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6
GSE experiment	GSE7639: Expression analysis of root developmental zones after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184836 Assay name Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE experiment GSE7639: Expression analysis of root developmental zones after treatment with salt

GSM ID GSM184836

Assay name Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6

GSE experiment GSE7639: Expression analysis of root developmental zones after treatment with salt