CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184834

Assay name Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4

GSE experiment GSE7639: Expression analysis of root developmental zones after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
74.7 99.9 95.4 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
59.7 99.8 295.5 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
54.6 99.8 89.5 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
49.3 99.8 96.8 At4g29520 829073 - F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA O.I. C.G. H.G.
46.8 99.8 42.5 At1g23100 838918 10 kDa chaperonin, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV O.I. C.G. H.G.
44.4 99.8 36.0 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
41.7 99.8 228.3 At3g54960 824661 ATPDIL1-3 (PDI-LIKE 1-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.
41.1 99.8 43.3 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
37.9 99.8 41.0 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
37.8 99.8 40.0 At3g18510 821381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.9 99.7 81.9 At3g52940 824460 FK (FACKEL) Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo. O.I. C.G. H.G.
31.6 99.7 29.5 At2g43880 818992 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
30.9 99.7 136.5 At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
29.9 99.7 169.8 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
27.7 99.7 36.4 At4g37400 829894 CYP81F3 member of CYP81F O.I. C.G. H.G.
26.5 99.7 35.9 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM O.I. C.G. H.G.
26.3 99.7 57.6 At5g03160 831917 ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. O.I. C.G. H.G.
26.3 99.7 21.6 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.1 99.7 97.3 At2g18400 816355 ribosomal protein L6 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA O.I. C.G. H.G.
25.0 99.6 71.5 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
24.7 99.6 96.0 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
24.6 99.6 142.3 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
23.4 99.6 29.1 At4g29430 829064 rps15ae (ribosomal protein S15A E) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPF O.I. C.G. H.G.
23.1 99.6 63.2 At1g04980 839355 ATPDIL2-2 (PDI-LIKE 2-2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. O.I. C.G. H.G.
22.8 99.6 175.9 At4g25890 828695 60S acidic ribosomal protein P3 (RPP3A) F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOB O.I. C.G. H.G.
22.7 99.6 17.2 At1g73160 843647 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM O.I. C.G. H.G.
22.3 99.6 16.4 At3g53650 824533 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB O.I. C.G. H.G.
22.0 99.6 16.6 At5g10850 830952 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
21.8 99.6 78.2 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
21.3 99.6 106.3 At3g17780 821046 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
21.3 99.6 102.3 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV O.I. C.G. H.G.
21.2 99.6 45.2 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
21.1 99.6 55.8 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.0 99.6 52.7 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
20.8 99.6 118.2 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
20.3 99.6 95.1 At4g30800 829203 40S ribosomal protein S11 (RPS11B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP O.I. C.G. H.G.
20.3 99.6 62.4 At5g07340 830625 calnexin, putative F:unfolded protein binding, calcium ion binding;P:protein folding;C:endoplasmic reticulum, plasma membrane, chloroplast, membrane;MOPFBV O.I. C.G. H.G.
19.7 99.6 120.3 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
19.4 99.6 80.0 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
19.4 99.6 20.8 At2g30340 817584 LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA O.I. C.G. H.G.
19.3 99.6 117.8 At1g47625 3767388 - pseudogene of seven transmembrane domain protein O.I. C.G. H.G.
19.2 99.6 118.7 At3g27080 822326 TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins O.I. C.G. H.G.
18.6 99.5 47.5 At3g49080 824070 ribosomal protein S9 family protein F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOMAPFV O.I. C.G. H.G.
18.3 99.5 66.4 At2g17630 816270 phosphoserine aminotransferase, putative F:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPA O.I. C.G. H.G.
18.2 99.5 58.3 At3g62810 825456 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
17.9 99.5 217.2 At3g16780 820931 60S ribosomal protein L19 (RPL19B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP O.I. C.G. H.G.
17.8 99.5 243.3 At3g57150 824882 NAP57 (Arabidopsis thaliana homologue of NAP57) Encodes a putative pseudouridine synthase (NAP57). O.I. C.G. H.G.
17.8 99.5 101.7 At3g57490 824916 40S ribosomal protein S2 (RPS2D) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFP O.I. C.G. H.G.
17.7 99.5 87.6 At1g77750 844111 30S ribosomal protein S13, chloroplast, putative F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAF O.I. C.G. H.G.
17.7 99.5 82.8 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.7 99.5 50.5 At2g43780 818981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
17.5 99.5 64.7 At1g61580 842454 RPL3B (R-PROTEIN L3 B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV O.I. C.G. H.G.
17.3 99.5 92.2 At1g10030 837538 ERG28 (Arabidopsis homolog of yeast ergosterol28) F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO O.I. C.G. H.G.
17.2 99.5 95.5 At2g34300 817991 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA O.I. C.G. H.G.
17.1 99.5 171.3 At2g25110 817049 SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, membrane;FMOP O.I. C.G. H.G.
17.1 99.5 95.9 At2g35605 818127 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV O.I. C.G. H.G.
17.1 99.5 77.8 At1g04340 839547 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
17.1 99.5 13.7 At1g10400 837580 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF O.I. C.G. H.G.
17.0 99.5 81.6 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
16.8 99.5 20.9 At5g14150 831265 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBO O.I. C.G. H.G.
16.8 99.5 11.6 At3g10660 820235 CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%. O.I. C.G. H.G.
16.6 99.5 211.9 At2g35120 818078 glycine cleavage system H protein, mitochondrial, putative F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex;BOPMFA O.I. C.G. H.G.
16.4 99.5 32.6 At5g24850 832554 CRY3 (cryptochrome 3) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome. O.I. C.G. H.G.
15.8 99.5 202.3 At4g29840 829106 MTO2 (METHIONINE OVER-ACCUMULATOR 2) threonine synthase O.I. C.G. H.G.
15.6 99.5 90.8 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P O.I. C.G. H.G.
15.5 99.5 59.2 At5g62440 836365 - Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. O.I. C.G. H.G.
15.5 99.5 50.0 At3g17300 820993 - F:unknown;P:unknown;C:unknown;PO O.I. C.G. H.G.
15.2 99.4 34.5 At1g32190 840111 - F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;MOBPFV O.I. C.G. H.G.
15.1 99.4 153.1 At1g54690 841910 GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. O.I. C.G. H.G.
15.1 99.4 108.7 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
15.1 99.4 68.2 At1g73940 843731 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.0 99.4 77.5 At4g00080 828192 UNE11 (unfertilized embryo sac 11) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;P O.I. C.G. H.G.
14.8 99.4 40.1 At3g08630 820010 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOFV O.I. C.G. H.G.
14.6 99.4 299.0 At2g45070 819114 SEC61 BETA Sec61 Beta Subunit O.I. C.G. H.G.
14.5 99.4 16.9 At5g26230 832692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPV O.I. C.G. H.G.
14.4 99.4 15.1 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
14.3 99.4 16.2 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
14.2 99.4 54.5 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
14.1 99.4 64.7 At5g66410 836773 PLP3b (Phosducin-like protein 3 homolog) Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy. O.I. C.G. H.G.
14.0 99.4 177.3 At2g20450 816564 60S ribosomal protein L14 (RPL14A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, endoplasmic reticulum, vacuole;MOFPA O.I. C.G. H.G.
13.9 99.4 74.0 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF O.I. C.G. H.G.
13.8 99.4 84.9 At1g07070 837218 60S ribosomal protein L35a (RPL35aA) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
13.6 99.4 98.8 At5g65810 836710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.5 99.4 85.4 At2g43640 818966 signal recognition particle 14 kDa family protein / SRP14 family protein F:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPO O.I. C.G. H.G.
13.5 99.4 73.4 At1g29310 839805 P-P-bond-hydrolysis-driven protein transmembrane transporter F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion, protein transport;C:mitochondrion, plasma membrane, membrane;BOMAFP O.I. C.G. H.G.
13.5 99.4 48.6 At1g23410 838949 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB O.I. C.G. H.G.
13.5 99.4 43.2 At3g55170 824683 60S ribosomal protein L35 (RPL35C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
13.4 99.4 201.8 At3g10090 820170 40S ribosomal protein S28 (RPS28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF O.I. C.G. H.G.
13.4 99.4 67.0 At2g15000 815989 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
13.4 99.4 42.7 At1g79260 844266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOP O.I. C.G. H.G.
13.2 99.4 75.4 At2g37250 818302 ADK (ADENOSINE KINASE) encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth O.I. C.G. H.G.
13.2 99.4 6.8 At4g35200 829673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
13.1 99.4 323.9 At1g09780 837507 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative F:manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:response to cadmium ion, response to cold;C:cytosol, mitochondrial envelope, chloroplast, plasma membrane;BOPFAM O.I. C.G. H.G.
13.1 99.4 274.1 At3g44590 823584 60S acidic ribosomal protein P2 (RPP2D) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA O.I. C.G. H.G.
13.1 99.4 43.9 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, O.I. C.G. H.G.
12.8 99.3 155.3 At3g03160 821066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.7 99.3 97.9 At5g56940 835796 ribosomal protein S16 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMF O.I. C.G. H.G.
12.7 99.3 25.8 At5g18070 831926 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). O.I. C.G. H.G.
12.6 99.3 127.0 At1g12000 837752 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to cadmium ion, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane;BOPFMAV O.I. C.G. H.G.
12.6 99.3 36.8 At3g26360 822240 unknown protein F:unknown;P:unknown;C:unknown;PBO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
74.7	99.9	95.4	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
59.7	99.8	295.5	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
54.6	99.8	89.5	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
49.3	99.8	96.8	At4g29520	829073	-	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA	O.I.	C.G.	H.G.
46.8	99.8	42.5	At1g23100	838918	10 kDa chaperonin, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV	O.I.	C.G.	H.G.
44.4	99.8	36.0	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
41.7	99.8	228.3	At3g54960	824661	ATPDIL1-3 (PDI-LIKE 1-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.
41.1	99.8	43.3	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
37.9	99.8	41.0	At5g51500	835224	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
37.8	99.8	40.0	At3g18510	821381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.9	99.7	81.9	At3g52940	824460	FK (FACKEL)	Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.	O.I.	C.G.	H.G.
31.6	99.7	29.5	At2g43880	818992	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
30.9	99.7	136.5	At5g12940	831134	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
29.9	99.7	169.8	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
27.7	99.7	36.4	At4g37400	829894	CYP81F3	member of CYP81F	O.I.	C.G.	H.G.
26.5	99.7	35.9	At3g23470	821928	cyclopropane-fatty-acyl-phospholipid synthase	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM	O.I.	C.G.	H.G.
26.3	99.7	57.6	At5g03160	831917	ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK)	J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.	O.I.	C.G.	H.G.
26.3	99.7	21.6	At5g62330	836354	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.1	99.7	97.3	At2g18400	816355	ribosomal protein L6 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA	O.I.	C.G.	H.G.
25.0	99.6	71.5	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
24.7	99.6	96.0	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
24.6	99.6	142.3	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.4	99.6	29.1	At4g29430	829064	rps15ae (ribosomal protein S15A E)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPF	O.I.	C.G.	H.G.
23.1	99.6	63.2	At1g04980	839355	ATPDIL2-2 (PDI-LIKE 2-2)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.	O.I.	C.G.	H.G.
22.8	99.6	175.9	At4g25890	828695	60S acidic ribosomal protein P3 (RPP3A)	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOB	O.I.	C.G.	H.G.
22.7	99.6	17.2	At1g73160	843647	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM	O.I.	C.G.	H.G.
22.3	99.6	16.4	At3g53650	824533	histone H2B, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB	O.I.	C.G.	H.G.
22.0	99.6	16.6	At5g10850	830952	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
21.8	99.6	78.2	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
21.3	99.6	106.3	At3g17780	821046	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.3	99.6	102.3	At3g06460	819823	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV	O.I.	C.G.	H.G.
21.2	99.6	45.2	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
21.1	99.6	55.8	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.0	99.6	52.7	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
20.8	99.6	118.2	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
20.3	99.6	95.1	At4g30800	829203	40S ribosomal protein S11 (RPS11B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP	O.I.	C.G.	H.G.
20.3	99.6	62.4	At5g07340	830625	calnexin, putative	F:unfolded protein binding, calcium ion binding;P:protein folding;C:endoplasmic reticulum, plasma membrane, chloroplast, membrane;MOPFBV	O.I.	C.G.	H.G.
19.7	99.6	120.3	At2g25980	817139	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
19.4	99.6	80.0	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
19.4	99.6	20.8	At2g30340	817584	LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA	O.I.	C.G.	H.G.
19.3	99.6	117.8	At1g47625	3767388	-	pseudogene of seven transmembrane domain protein	O.I.	C.G.	H.G.
19.2	99.6	118.7	At3g27080	822326	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins	O.I.	C.G.	H.G.
18.6	99.5	47.5	At3g49080	824070	ribosomal protein S9 family protein	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOMAPFV	O.I.	C.G.	H.G.
18.3	99.5	66.4	At2g17630	816270	phosphoserine aminotransferase, putative	F:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
18.2	99.5	58.3	At3g62810	825456	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
17.9	99.5	217.2	At3g16780	820931	60S ribosomal protein L19 (RPL19B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP	O.I.	C.G.	H.G.
17.8	99.5	243.3	At3g57150	824882	NAP57 (Arabidopsis thaliana homologue of NAP57)	Encodes a putative pseudouridine synthase (NAP57).	O.I.	C.G.	H.G.
17.8	99.5	101.7	At3g57490	824916	40S ribosomal protein S2 (RPS2D)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFP	O.I.	C.G.	H.G.
17.7	99.5	87.6	At1g77750	844111	30S ribosomal protein S13, chloroplast, putative	F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
17.7	99.5	82.8	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.7	99.5	50.5	At2g43780	818981	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
17.5	99.5	64.7	At1g61580	842454	RPL3B (R-PROTEIN L3 B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV	O.I.	C.G.	H.G.
17.3	99.5	92.2	At1g10030	837538	ERG28 (Arabidopsis homolog of yeast ergosterol28)	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO	O.I.	C.G.	H.G.
17.2	99.5	95.5	At2g34300	817991	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA	O.I.	C.G.	H.G.
17.1	99.5	171.3	At2g25110	817049	SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, membrane;FMOP	O.I.	C.G.	H.G.
17.1	99.5	95.9	At2g35605	818127	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV	O.I.	C.G.	H.G.
17.1	99.5	77.8	At1g04340	839547	lesion inducing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
17.1	99.5	13.7	At1g10400	837580	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
17.0	99.5	81.6	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
16.8	99.5	20.9	At5g14150	831265	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBO	O.I.	C.G.	H.G.
16.8	99.5	11.6	At3g10660	820235	CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)	predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%.	O.I.	C.G.	H.G.
16.6	99.5	211.9	At2g35120	818078	glycine cleavage system H protein, mitochondrial, putative	F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex;BOPMFA	O.I.	C.G.	H.G.
16.4	99.5	32.6	At5g24850	832554	CRY3 (cryptochrome 3)	Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.	O.I.	C.G.	H.G.
15.8	99.5	202.3	At4g29840	829106	MTO2 (METHIONINE OVER-ACCUMULATOR 2)	threonine synthase	O.I.	C.G.	H.G.
15.6	99.5	90.8	At5g10130	830877	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P	O.I.	C.G.	H.G.
15.5	99.5	59.2	At5g62440	836365	-	Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.	O.I.	C.G.	H.G.
15.5	99.5	50.0	At3g17300	820993	-	F:unknown;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
15.2	99.4	34.5	At1g32190	840111	-	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;MOBPFV	O.I.	C.G.	H.G.
15.1	99.4	153.1	At1g54690	841910	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.	O.I.	C.G.	H.G.
15.1	99.4	108.7	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
15.1	99.4	68.2	At1g73940	843731	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.0	99.4	77.5	At4g00080	828192	UNE11 (unfertilized embryo sac 11)	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;P	O.I.	C.G.	H.G.
14.8	99.4	40.1	At3g08630	820010	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOFV	O.I.	C.G.	H.G.
14.6	99.4	299.0	At2g45070	819114	SEC61 BETA	Sec61 Beta Subunit	O.I.	C.G.	H.G.
14.5	99.4	16.9	At5g26230	832692	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPV	O.I.	C.G.	H.G.
14.4	99.4	15.1	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
14.3	99.4	16.2	At1g27140	839603	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
14.2	99.4	54.5	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
14.1	99.4	64.7	At5g66410	836773	PLP3b (Phosducin-like protein 3 homolog)	Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.	O.I.	C.G.	H.G.
14.0	99.4	177.3	At2g20450	816564	60S ribosomal protein L14 (RPL14A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, endoplasmic reticulum, vacuole;MOFPA	O.I.	C.G.	H.G.
13.9	99.4	74.0	At1g80270	844367	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF	O.I.	C.G.	H.G.
13.8	99.4	84.9	At1g07070	837218	60S ribosomal protein L35a (RPL35aA)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
13.6	99.4	98.8	At5g65810	836710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.5	99.4	85.4	At2g43640	818966	signal recognition particle 14 kDa family protein / SRP14 family protein	F:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPO	O.I.	C.G.	H.G.
13.5	99.4	73.4	At1g29310	839805	P-P-bond-hydrolysis-driven protein transmembrane transporter	F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion, protein transport;C:mitochondrion, plasma membrane, membrane;BOMAFP	O.I.	C.G.	H.G.
13.5	99.4	48.6	At1g23410	838949	ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)	F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB	O.I.	C.G.	H.G.
13.5	99.4	43.2	At3g55170	824683	60S ribosomal protein L35 (RPL35C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
13.4	99.4	201.8	At3g10090	820170	40S ribosomal protein S28 (RPS28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF	O.I.	C.G.	H.G.
13.4	99.4	67.0	At2g15000	815989	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
13.4	99.4	42.7	At1g79260	844266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOP	O.I.	C.G.	H.G.
13.2	99.4	75.4	At2g37250	818302	ADK (ADENOSINE KINASE)	encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth	O.I.	C.G.	H.G.
13.2	99.4	6.8	At4g35200	829673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
13.1	99.4	323.9	At1g09780	837507	2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative	F:manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:response to cadmium ion, response to cold;C:cytosol, mitochondrial envelope, chloroplast, plasma membrane;BOPFAM	O.I.	C.G.	H.G.
13.1	99.4	274.1	At3g44590	823584	60S acidic ribosomal protein P2 (RPP2D)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA	O.I.	C.G.	H.G.
13.1	99.4	43.9	At5g13870	831233	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	EXGT-A4, endoxyloglucan transferase,	O.I.	C.G.	H.G.
12.8	99.3	155.3	At3g03160	821066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.7	99.3	97.9	At5g56940	835796	ribosomal protein S16 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMF	O.I.	C.G.	H.G.
12.7	99.3	25.8	At5g18070	831926	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)	encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).	O.I.	C.G.	H.G.
12.6	99.3	127.0	At1g12000	837752	pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to cadmium ion, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane;BOPFMAV	O.I.	C.G.	H.G.
12.6	99.3	36.8	At3g26360	822240	unknown protein	F:unknown;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.

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GSM ID	GSM184834
Assay name	Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4
GSE experiment	GSE7639: Expression analysis of root developmental zones after treatment with salt

Microarray experiments to specifically-expressed genes

GSM ID GSM184834 Assay name Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4 GSE experiment GSE7639: Expression analysis of root developmental zones after treatment with salt

GSM ID GSM184834

Assay name Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4

GSE experiment GSE7639: Expression analysis of root developmental zones after treatment with salt