Microarray experiments to specifically-expressed genes

GSM ID GSM184832
Assay name Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2
GSE experiment GSE7639: Expression analysis of root developmental zones after treatment with salt

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
148.199.928.4At1g50720841494stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFMO.I.C.G.H.G.
138.599.9134.2At2g43600818962glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
136.299.9198.4At5g66280836760GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)GDP-D-mannose 4,6-dehydrataseO.I.C.G.H.G.
124.699.945.2At3g62760825451ATGSTF13Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
120.299.9130.6At2g23630816895sks16 (SKU5 Similar 16)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
95.199.9264.1At1g50060841430pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
92.799.952.0At5g57980835909RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)NRPB5-like protein of unknown function; homologous to budding yeast RPB5O.I.C.G.H.G.
88.199.9262.0At3g19430821477late embryogenesis abundant protein-related / LEA protein-relatedF:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVAO.I.C.G.H.G.
78.299.9135.7At5g60520836173late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
78.099.921.2At5g15725831428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
77.099.9201.9At5g10130830877pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.C.G.H.G.
67.299.899.3At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
64.199.852.1At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
63.899.842.0At3g05390819703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABOO.I.C.G.H.G.
63.299.857.3At1g14080837968FUT6 (FUCOSYLTRANSFERASE 6)member of Xyloglucan fucosyltransferase familyO.I.C.G.H.G.
61.699.848.8At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
61.099.842.4At1g56680842124glycoside hydrolase family 19 proteinF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
59.099.843.9At4g19460827687glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMFO.I.C.G.H.G.
57.199.825.0At1g10400837580UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOFO.I.C.G.H.G.
56.099.8103.7At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
54.099.8210.9At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
52.999.8282.8At1g52060841635-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
50.299.853.5At5g04970830379pectinesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVAO.I.C.G.H.G.
50.099.885.8At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
44.599.876.7At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
42.099.8271.1At1g52070841636jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
42.099.8162.9At1g22880838893CEL5 (CELLULASE 5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOFO.I.C.G.H.G.
41.999.8238.4At4g2589082869560S acidic ribosomal protein P3 (RPP3A)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOBO.I.C.G.H.G.
41.399.888.5At4g37160829870sks15 (SKU5 Similar 15)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
40.599.8232.8At1g52050841634jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
40.499.8122.9At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
40.299.812.2At2g16230816120catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
38.399.8340.8At5g54370835525late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
37.999.8159.5At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
37.799.7150.7At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
37.699.726.5At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
36.499.799.6At3g61930825366unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PO.I.C.G.H.G.
36.399.790.6At5g62440836365-Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.O.I.C.G.H.G.
34.999.7136.9At2g35605818127SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMVO.I.C.G.H.G.
34.099.7115.7At1g80270844367DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMFO.I.C.G.H.G.
33.799.781.6At4g27400828848late embryogenesis abundant protein-related / LEA protein-relatedF:unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
33.199.740.9At5g14690831321unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVMO.I.C.G.H.G.
32.999.7121.1At4g3080082920340S ribosomal protein S11 (RPS11B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFPO.I.C.G.H.G.
32.599.722.8At3g03130821080unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
32.499.793.4At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
31.899.766.3At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
31.399.7308.5At3g1009082017040S ribosomal protein S28 (RPS28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFO.I.C.G.H.G.
31.299.726.3At2g37510818327RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAO.I.C.G.H.G.
31.099.735.4At3g14530820678geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:chloroplast;OBFPMAVO.I.C.G.H.G.
30.199.7316.7At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
29.999.770.6At2g04025814929unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
29.299.746.0At3g60360825207EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)F:molecular_function unknown;P:megagametogenesis;C:small-subunit processome;MFOPABO.I.C.G.H.G.
28.399.796.2At4g25340828637immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-relatedF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVAO.I.C.G.H.G.
27.999.734.8At1g33750840266terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
27.799.712.6At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
27.099.717.2At1g64220842727TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:intracellular protein transport;C:mitochondrial outer membrane;PO.I.C.G.H.G.
26.799.7136.6At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
26.199.7131.9At5g02050831729mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMBO.I.C.G.H.G.
26.099.738.1At2g07695815371cytochrome c oxidase subunit II, putativeF:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBPO.I.C.G.H.G.
25.699.7114.5At2g07751815347NADH-ubiquinone oxidoreductase chain 3, putativeF:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFAO.I.C.G.H.G.
25.399.671.9At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.O.I.C.G.H.G.
24.999.652.2At5g13520831196peptidase M1 family proteinF:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAPO.I.C.G.H.G.
24.699.641.6At5g57500835854transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOFO.I.C.G.H.G.
23.799.6106.1At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
23.599.6107.7At5g1552083140540S ribosomal protein S19 (RPS19B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, membrane;MOAPFBO.I.C.G.H.G.
23.499.6209.7At1g56110842063NOP56 (Arabidopsis homolog of nucleolar protein Nop56)NOP56-like proteinO.I.C.G.H.G.
22.899.652.7At1g54890841928late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.799.658.3At5g57120835816-F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVAO.I.C.G.H.G.
22.499.6147.4At5g41010834103NRPB12Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.O.I.C.G.H.G.
22.499.620.8At2g40470818641LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
22.399.633.6At2g34570818021MEE21 (maternal effect embryo arrest 21)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;MFOPO.I.C.G.H.G.
22.099.6119.4At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
22.099.622.2At5g42060834211unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.999.678.4At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
21.899.642.0At1g74490843790protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
21.499.621.9At2g30340817584LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBAO.I.C.G.H.G.
21.299.6210.0At2g3939081852460S ribosomal protein L35 (RPL35B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
21.299.642.9At2g14460815934unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.299.68.5At5g40320834030DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.C.G.H.G.
21.199.619.2At5g07040830595zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVO.I.C.G.H.G.
21.099.6217.1At2g2045081656460S ribosomal protein L14 (RPL14A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, endoplasmic reticulum, vacuole;MOFPAO.I.C.G.H.G.
20.999.656.8At2g29540817503ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)RNA polymerase I(A) and III(C) 14 kDa subunitO.I.C.G.H.G.
20.899.646.4At4g31320829259auxin-responsive protein, putative / small auxin up RNA (SAUR_C)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
20.799.6106.6At3g13860820599HSP60-3A (HEAT SHOCK PROTEIN 60-3A)F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAVO.I.C.G.H.G.
20.799.612.3At3g496308241252-oxoacid-dependent oxidase, putativeF:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFMO.I.C.G.H.G.
20.699.6177.4At3g23830821966GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.O.I.C.G.H.G.
20.699.6144.5At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
20.699.624.7At1g07290837240nucleotide-sugar transmembrane transporterF:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
20.499.635.9At1g12740837830CYP87A2encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
20.199.6199.2At2g40360818629transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVAO.I.C.G.H.G.
20.199.639.8At1g32190840111-F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;MOBPFVO.I.C.G.H.G.
20.199.612.8At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.O.I.C.G.H.G.
19.899.670.1At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
19.599.656.0At3g17300820993-F:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
19.399.688.1At4g00080828192UNE11 (unfertilized embryo sac 11)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;PO.I.C.G.H.G.
19.399.658.4At1g75710843905zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;OPMFO.I.C.G.H.G.
19.399.630.8At4g31930829323mitochondrial glycoprotein family protein / MAM33 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOO.I.C.G.H.G.
19.199.622.3At1g33280840223ANAC015 (Arabidopsis NAC domain containing protein 15)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
19.099.536.8At2g47140819327short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
18.899.584.7At3g01740821088-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.



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