CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184635

Assay name Arabidopsis, root cells, 140 mM NaCl, replicate 2

GSE experiment GSE7636: Expression analysis of the effect of protoplasting and FACS sorting in roots

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
188.2 100.0 75.3 At1g14550 838017 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
176.9 100.0 57.8 At5g01380 831895 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA O.I. C.G. H.G.
147.5 99.9 177.3 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
110.5 99.9 27.2 At5g55090 835600 MAPKKK15 member of MEKK subfamily O.I. C.G. H.G.
93.8 99.9 234.9 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
88.2 99.9 125.8 At5g59490 836068 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
86.4 99.9 200.6 At5g19110 832031 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
86.2 99.9 67.5 At4g08160 826365 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
80.1 99.9 133.6 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. O.I. C.G. H.G.
79.4 99.9 162.4 At2g18210 816336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
78.4 99.9 446.4 At3g44190 823541 pyridine nucleotide-disulphide oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMP O.I. C.G. H.G.
74.1 99.9 55.9 At5g28610 832960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB O.I. C.G. H.G.
73.8 99.9 177.7 At4g18950 827630 ankyrin protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:nucleus, cytoplasm;MOPBFVA O.I. C.G. H.G.
72.6 99.9 67.7 At1g12740 837830 CYP87A2 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
72.4 99.9 31.8 At2g30400 817591 OFP2 (OVATE FAMILY PROTEIN 2) F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB O.I. C.G. H.G.
72.0 99.9 159.1 At3g52450 824410 PUB22 (PLANT U-BOX 22) Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. O.I. C.G. H.G.
67.6 99.9 166.8 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. O.I. C.G. H.G.
66.1 99.8 89.1 At1g80820 844421 CCR2 (CINNAMOYL COA REDUCTASE) Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis. O.I. C.G. H.G.
64.7 99.8 69.5 At4g37710 829927 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
63.0 99.8 66.6 At2g30130 817565 ASL5 Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression. O.I. C.G. H.G.
59.7 99.8 107.0 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
59.7 99.8 52.1 At4g36710 829824 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO O.I. C.G. H.G.
58.4 99.8 297.1 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
57.8 99.8 97.5 At4g22640 828360 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
57.2 99.8 169.2 At4g17490 827463 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
55.7 99.8 76.5 At3g27880 822408 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
55.4 99.8 30.3 At5g51520 835226 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
49.9 99.8 101.2 At2g34930 818058 disease resistance family protein F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV O.I. C.G. H.G.
49.7 99.8 40.7 At5g52400 835316 CYP715A1 member of CYP715A O.I. C.G. H.G.
49.5 99.8 36.9 At1g70130 843349 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
48.5 99.8 91.3 At2g15490 816041 UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF O.I. C.G. H.G.
48.4 99.8 124.6 At1g20823 838674 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV O.I. C.G. H.G.
48.1 99.8 139.4 At2g29440 817493 ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
47.5 99.8 66.9 At5g07870 830680 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
47.2 99.8 51.3 At2g07695 815371 cytochrome c oxidase subunit II, putative F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP O.I. C.G. H.G.
47.2 99.8 35.6 At4g25380 828641 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
46.3 99.8 137.1 At5g25930 832662 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA O.I. C.G. H.G.
46.0 99.8 200.1 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
45.8 99.8 372.7 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.5 99.8 48.6 At3g25730 822164 AP2 domain-containing transcription factor, putative F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;PO O.I. C.G. H.G.
44.4 99.8 72.2 At2g01300 814658 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
44.1 99.8 221.1 At1g17180 838289 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
44.1 99.8 118.6 At2g16900 816192 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA O.I. C.G. H.G.
44.0 99.8 145.3 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein O.I. C.G. H.G.
43.7 99.8 478.3 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. O.I. C.G. H.G.
43.7 99.8 120.0 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
42.8 99.8 77.9 At4g01250 827896 WRKY22 member of WRKY Transcription Factor; Group II-e O.I. C.G. H.G.
41.9 99.8 207.9 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV O.I. C.G. H.G.
41.7 99.8 137.6 At5g14730 831325 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
41.3 99.8 168.7 At1g77450 844081 anac032 (Arabidopsis NAC domain containing protein 32) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
40.9 99.8 24.0 At5g58680 835982 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
40.5 99.8 36.5 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
40.2 99.8 232.1 At1g52050 841634 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
39.9 99.8 357.4 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
38.8 99.8 28.1 At2g40180 818609 ATHPP2C5 F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA O.I. C.G. H.G.
38.5 99.8 50.0 At1g69920 843328 ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
38.1 99.8 183.6 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
37.4 99.7 218.4 At4g24160 828516 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.
37.0 99.7 193.4 At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF O.I. C.G. H.G.
36.9 99.7 308.4 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM O.I. C.G. H.G.
36.8 99.7 233.9 At1g20850 838677 XCP2 (xylem cysteine peptidase 2) F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF O.I. C.G. H.G.
36.5 99.7 123.7 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
36.5 99.7 104.1 At5g41080 834110 glycerophosphoryl diester phosphodiesterase family protein F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
36.3 99.7 331.9 At1g19020 838483 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
36.1 99.7 224.0 At5g64250 836546 2-nitropropane dioxygenase family / NPD family F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
36.0 99.7 121.9 At3g06420 819816 ATG8H (autophagy 8h) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. C.G. H.G.
35.9 99.7 97.0 At5g66650 836797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA O.I. C.G. H.G.
35.3 99.7 65.3 At5g47050 834751 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA O.I. C.G. H.G.
35.2 99.7 125.2 At1g25400 839126 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.8 99.7 176.2 At1g28480 839748 GRX480 Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk. O.I. C.G. H.G.
34.8 99.7 67.1 At5g17850 831653 cation exchanger, putative (CAX8) F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA O.I. C.G. H.G.
34.8 99.7 42.4 At5g40540 834052 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
34.6 99.7 9.4 At4g37850 829941 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
34.4 99.7 211.5 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB O.I. C.G. H.G.
34.4 99.7 152.1 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
34.4 99.7 89.6 At5g28630 832966 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
34.3 99.7 98.8 At5g62520 836372 SRO5 (SIMILAR TO RCD ONE 5) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. O.I. C.G. H.G.
34.3 99.7 64.7 At2g15480 816040 UGT73B5 (UDP-glucosyl transferase 73B5) F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF O.I. C.G. H.G.
34.0 99.7 28.4 At3g62160 825389 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
33.8 99.7 314.4 At4g21830 828271 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
33.3 99.7 117.6 At3g19580 821495 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2) Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
33.2 99.7 126.3 At1g32100 840102 PRR1 (PINORESINOL REDUCTASE 1) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol. O.I. C.G. H.G.
33.2 99.7 102.4 At2g45400 819146 BEN1 involved in the regulation of brassinosteroid metabolic pathway O.I. C.G. H.G.
32.8 99.7 182.9 At1g62570 842554 FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
32.5 99.7 114.1 At4g30490 829172 AFG1-like ATPase family protein F:ATPase activity, ATP binding;P:biological_process unknown;C:unknown;OBFMP O.I. C.G. H.G.
32.5 99.7 99.7 At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. O.I. C.G. H.G.
32.2 99.7 224.9 At5g05600 830443 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM O.I. C.G. H.G.
32.2 99.7 21.4 At3g49690 824131 MYB84 (MYB DOMAIN PROTEIN 84) "Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. " O.I. C.G. H.G.
32.1 99.7 32.0 At2g07777 2745461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.1 99.7 230.3 At4g24380 828540 unknown protein F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB O.I. C.G. H.G.
30.7 99.7 371.5 At4g01870 828228 tolB protein-related F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;OBPFAM O.I. C.G. H.G.
30.5 99.7 12.3 At4g15350 827201 CYP705A2 member of CYP705A O.I. C.G. H.G.
30.3 99.7 125.4 At5g51890 835264 peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots O.I. C.G. H.G.
30.3 99.7 89.3 At2g31945 817753 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
30.3 99.7 68.9 At4g28085 828924 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
29.9 99.7 73.1 At5g10300 830894 MES5 (METHYL ESTERASE 5) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
29.8 99.7 203.1 At3g44860 823620 FAMT (farnesoic acid carboxyl-O-methyltransferase) Encodes a farnesoic acid carboxyl-O-methyltransferase. O.I. C.G. H.G.
29.7 99.7 245.2 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF O.I. C.G. H.G.
29.6 99.7 123.1 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
29.6 99.7 120.8 At1g30700 839950 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
188.2	100.0	75.3	At1g14550	838017	anionic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
176.9	100.0	57.8	At5g01380	831895	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
147.5	99.9	177.3	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
110.5	99.9	27.2	At5g55090	835600	MAPKKK15	member of MEKK subfamily	O.I.	C.G.	H.G.
93.8	99.9	234.9	At2g22860	816817	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
88.2	99.9	125.8	At5g59490	836068	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
86.4	99.9	200.6	At5g19110	832031	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
86.2	99.9	67.5	At4g08160	826365	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
80.1	99.9	133.6	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	O.I.	C.G.	H.G.
79.4	99.9	162.4	At2g18210	816336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
78.4	99.9	446.4	At3g44190	823541	pyridine nucleotide-disulphide oxidoreductase family protein	F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMP	O.I.	C.G.	H.G.
74.1	99.9	55.9	At5g28610	832960	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB	O.I.	C.G.	H.G.
73.8	99.9	177.7	At4g18950	827630	ankyrin protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:nucleus, cytoplasm;MOPBFVA	O.I.	C.G.	H.G.
72.6	99.9	67.7	At1g12740	837830	CYP87A2	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
72.4	99.9	31.8	At2g30400	817591	OFP2 (OVATE FAMILY PROTEIN 2)	F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB	O.I.	C.G.	H.G.
72.0	99.9	159.1	At3g52450	824410	PUB22 (PLANT U-BOX 22)	Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.	O.I.	C.G.	H.G.
67.6	99.9	166.8	At1g15520	838122	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.	O.I.	C.G.	H.G.
66.1	99.8	89.1	At1g80820	844421	CCR2 (CINNAMOYL COA REDUCTASE)	Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis.	O.I.	C.G.	H.G.
64.7	99.8	69.5	At4g37710	829927	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
63.0	99.8	66.6	At2g30130	817565	ASL5	Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression.	O.I.	C.G.	H.G.
59.7	99.8	107.0	At3g04320	819587	endopeptidase inhibitor	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
59.7	99.8	52.1	At4g36710	829824	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
58.4	99.8	297.1	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
57.8	99.8	97.5	At4g22640	828360	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
57.2	99.8	169.2	At4g17490	827463	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
55.7	99.8	76.5	At3g27880	822408	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
55.4	99.8	30.3	At5g51520	835226	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
49.9	99.8	101.2	At2g34930	818058	disease resistance family protein	F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV	O.I.	C.G.	H.G.
49.7	99.8	40.7	At5g52400	835316	CYP715A1	member of CYP715A	O.I.	C.G.	H.G.
49.5	99.8	36.9	At1g70130	843349	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
48.5	99.8	91.3	At2g15490	816041	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
48.4	99.8	124.6	At1g20823	838674	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV	O.I.	C.G.	H.G.
48.1	99.8	139.4	At2g29440	817493	ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
47.5	99.8	66.9	At5g07870	830680	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
47.2	99.8	51.3	At2g07695	815371	cytochrome c oxidase subunit II, putative	F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP	O.I.	C.G.	H.G.
47.2	99.8	35.6	At4g25380	828641	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
46.3	99.8	137.1	At5g25930	832662	leucine-rich repeat family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA	O.I.	C.G.	H.G.
46.0	99.8	200.1	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
45.8	99.8	372.7	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.5	99.8	48.6	At3g25730	822164	AP2 domain-containing transcription factor, putative	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;PO	O.I.	C.G.	H.G.
44.4	99.8	72.2	At2g01300	814658	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
44.1	99.8	221.1	At1g17180	838289	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
44.1	99.8	118.6	At2g16900	816192	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA	O.I.	C.G.	H.G.
44.0	99.8	145.3	At4g35350	829688	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	tracheary element vacuolar protein	O.I.	C.G.	H.G.
43.7	99.8	478.3	At1g47600	841169	BGLU34 (BETA GLUCOSIDASE 34)	Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.	O.I.	C.G.	H.G.
43.7	99.8	120.0	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
42.8	99.8	77.9	At4g01250	827896	WRKY22	member of WRKY Transcription Factor; Group II-e	O.I.	C.G.	H.G.
41.9	99.8	207.9	At1g06090	837118	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV	O.I.	C.G.	H.G.
41.7	99.8	137.6	At5g14730	831325	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
41.3	99.8	168.7	At1g77450	844081	anac032 (Arabidopsis NAC domain containing protein 32)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.9	99.8	24.0	At5g58680	835982	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
40.5	99.8	36.5	At2g26380	817178	disease resistance protein-related / LRR protein-related	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
40.2	99.8	232.1	At1g52050	841634	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
39.9	99.8	357.4	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
38.8	99.8	28.1	At2g40180	818609	ATHPP2C5	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA	O.I.	C.G.	H.G.
38.5	99.8	50.0	At1g69920	843328	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
38.1	99.8	183.6	At5g66390	836771	peroxidase 72 (PER72) (P72) (PRXR8)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
37.4	99.7	218.4	At4g24160	828516	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
37.0	99.7	193.4	At4g01700	828131	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF	O.I.	C.G.	H.G.
36.9	99.7	308.4	At2g43610	818963	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM	O.I.	C.G.	H.G.
36.8	99.7	233.9	At1g20850	838677	XCP2 (xylem cysteine peptidase 2)	F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF	O.I.	C.G.	H.G.
36.5	99.7	123.7	At3g49190	824080	condensation domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
36.5	99.7	104.1	At5g41080	834110	glycerophosphoryl diester phosphodiesterase family protein	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
36.3	99.7	331.9	At1g19020	838483	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.1	99.7	224.0	At5g64250	836546	2-nitropropane dioxygenase family / NPD family	F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
36.0	99.7	121.9	At3g06420	819816	ATG8H (autophagy 8h)	F:microtubule binding;P:autophagy;C:unknown;MOPFV	O.I.	C.G.	H.G.
35.9	99.7	97.0	At5g66650	836797	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA	O.I.	C.G.	H.G.
35.3	99.7	65.3	At5g47050	834751	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA	O.I.	C.G.	H.G.
35.2	99.7	125.2	At1g25400	839126	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.8	99.7	176.2	At1g28480	839748	GRX480	Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.	O.I.	C.G.	H.G.
34.8	99.7	67.1	At5g17850	831653	cation exchanger, putative (CAX8)	F:cation:cation antiporter activity, calcium:sodium antiporter activity;P:cation transport;C:endomembrane system, integral to membrane;MBOFPA	O.I.	C.G.	H.G.
34.8	99.7	42.4	At5g40540	834052	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
34.6	99.7	9.4	At4g37850	829941	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
34.4	99.7	211.5	At4g13580	826991	disease resistance-responsive family protein	F:molecular_function unknown;P:unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
34.4	99.7	152.1	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
34.4	99.7	89.6	At5g28630	832966	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
34.3	99.7	98.8	At5g62520	836372	SRO5 (SIMILAR TO RCD ONE 5)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	O.I.	C.G.	H.G.
34.3	99.7	64.7	At2g15480	816040	UGT73B5 (UDP-glucosyl transferase 73B5)	F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
34.0	99.7	28.4	At3g62160	825389	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
33.8	99.7	314.4	At4g21830	828271	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
33.3	99.7	117.6	At3g19580	821495	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
33.2	99.7	126.3	At1g32100	840102	PRR1 (PINORESINOL REDUCTASE 1)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
33.2	99.7	102.4	At2g45400	819146	BEN1	involved in the regulation of brassinosteroid metabolic pathway	O.I.	C.G.	H.G.
32.8	99.7	182.9	At1g62570	842554	FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
32.5	99.7	114.1	At4g30490	829172	AFG1-like ATPase family protein	F:ATPase activity, ATP binding;P:biological_process unknown;C:unknown;OBFMP	O.I.	C.G.	H.G.
32.5	99.7	99.7	At4g35480	829700	RHA3B	Encodes a putative RING-H2 finger protein RHA3b.	O.I.	C.G.	H.G.
32.2	99.7	224.9	At5g05600	830443	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFM	O.I.	C.G.	H.G.
32.2	99.7	21.4	At3g49690	824131	MYB84 (MYB DOMAIN PROTEIN 84)	"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. "	O.I.	C.G.	H.G.
32.1	99.7	32.0	At2g07777	2745461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.1	99.7	230.3	At4g24380	828540	unknown protein	F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB	O.I.	C.G.	H.G.
30.7	99.7	371.5	At4g01870	828228	tolB protein-related	F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;OBPFAM	O.I.	C.G.	H.G.
30.5	99.7	12.3	At4g15350	827201	CYP705A2	member of CYP705A	O.I.	C.G.	H.G.
30.3	99.7	125.4	At5g51890	835264	peroxidase	encodes peroxidase involved in the lignification of tracheary elements (TE) in roots	O.I.	C.G.	H.G.
30.3	99.7	89.3	At2g31945	817753	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
30.3	99.7	68.9	At4g28085	828924	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
29.9	99.7	73.1	At5g10300	830894	MES5 (METHYL ESTERASE 5)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
29.8	99.7	203.1	At3g44860	823620	FAMT (farnesoic acid carboxyl-O-methyltransferase)	Encodes a farnesoic acid carboxyl-O-methyltransferase.	O.I.	C.G.	H.G.
29.7	99.7	245.2	At4g34131	829559	UGT73B3 (UDP-glucosyl transferase 73B3)	F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
29.6	99.7	123.1	At2g37870	818363	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
29.6	99.7	120.8	At1g30700	839950	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA	O.I.	C.G.	H.G.

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GSM ID	GSM184635
Assay name	Arabidopsis, root cells, 140 mM NaCl, replicate 2
GSE experiment	GSE7636: Expression analysis of the effect of protoplasting and FACS sorting in roots

Microarray experiments to specifically-expressed genes

GSM ID GSM184635 Assay name Arabidopsis, root cells, 140 mM NaCl, replicate 2 GSE experiment GSE7636: Expression analysis of the effect of protoplasting and FACS sorting in roots

GSM ID GSM184635

Assay name Arabidopsis, root cells, 140 mM NaCl, replicate 2

GSE experiment GSE7636: Expression analysis of the effect of protoplasting and FACS sorting in roots