CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184561

Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
890.2 100.0 323.6 At4g19750 827719 glycosyl hydrolase family 18 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA O.I. C.G. H.G.
325.8 100.0 126.5 At5g14650 831317 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
244.6 100.0 74.0 At1g65680 842879 ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
194.2 100.0 146.8 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
182.6 100.0 342.3 At2g19970 816516 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO O.I. C.G. H.G.
175.8 100.0 38.4 At2g02580 814788 CYP71B9 member of CYP71B O.I. C.G. H.G.
163.3 99.9 254.9 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
121.7 99.9 211.4 At2g19990 816518 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive. O.I. C.G. H.G.
100.3 99.9 110.5 At3g50350 824197 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
98.1 99.9 98.2 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
83.4 99.9 168.7 At5g39110 833904 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
80.1 99.9 142.2 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB O.I. C.G. H.G.
77.4 99.9 36.9 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
73.5 99.9 96.9 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
72.2 99.9 38.1 At2g30660 817616 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
71.8 99.9 421.8 At4g30140 829137 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
71.1 99.9 163.6 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
70.5 99.9 142.5 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF O.I. C.G. H.G.
69.6 99.9 36.3 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
69.0 99.9 134.9 At5g38930 833885 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO O.I. C.G. H.G.
68.1 99.9 41.4 At3g51350 824298 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV O.I. C.G. H.G.
61.1 99.8 66.6 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
61.0 99.8 63.0 At4g35150 829667 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO O.I. C.G. H.G.
58.9 99.8 127.2 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP O.I. C.G. H.G.
57.1 99.8 175.6 At1g67750 843100 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
51.7 99.8 210.5 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
47.0 99.8 51.6 At1g21890 838791 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAM O.I. C.G. H.G.
46.0 99.8 188.2 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. O.I. C.G. H.G.
44.0 99.8 21.3 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV O.I. C.G. H.G.
41.8 99.8 46.9 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
41.5 99.8 27.9 At2g45550 819163 CYP76C4 member of CYP76C O.I. C.G. H.G.
40.7 99.8 73.2 At5g45440 834580 disease resistance protein-related F:ATP binding;P:apoptosis;C:cellular_component unknown;PFB O.I. C.G. H.G.
38.9 99.8 432.2 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
38.8 99.8 136.9 At3g23190 821897 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
36.8 99.7 365.5 At3g54040 824571 photoassimilate-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
36.5 99.7 80.6 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.9 99.7 71.1 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
33.3 99.7 404.9 At2g38380 818419 peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E F:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:plant-type cell wall;PFO O.I. C.G. H.G.
32.9 99.7 34.4 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
32.5 99.7 212.8 At3g02910 821189 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA O.I. C.G. H.G.
32.0 99.7 131.9 At3g13650 820569 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
31.0 99.7 259.9 At1g44800 841044 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BOPAM O.I. C.G. H.G.
30.9 99.7 67.1 At5g23530 832418 AtCXE18 (Arabidopsis thaliana carboxyesterase 18) F:carboxylesterase activity;P:metabolic process;C:unknown;BOFPMAV O.I. C.G. H.G.
30.5 99.7 95.5 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
30.5 99.7 24.4 At2g21900 816726 WRKY59 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
30.4 99.7 124.8 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
30.0 99.7 99.9 At1g67030 843022 ZFP6 (ZINC FINGER PROTEIN 6) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
29.8 99.7 68.5 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
29.4 99.7 11.6 At1g78360 844172 ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
29.2 99.7 139.9 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.9 99.7 80.3 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. O.I. C.G. H.G.
28.7 99.7 250.1 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA O.I. C.G. H.G.
28.7 99.7 22.9 At3g61400 825312 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein O.I. C.G. H.G.
28.6 99.7 52.9 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
28.4 99.7 65.6 At4g37430 829897 CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2) Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily. O.I. C.G. H.G.
28.2 99.7 29.9 At3g47040 823857 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM O.I. C.G. H.G.
27.2 99.7 18.4 At3g47050 823858 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAM O.I. C.G. H.G.
27.1 99.7 16.6 At2g47560 819369 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
26.9 99.7 28.2 At3g62780 825453 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVFB O.I. C.G. H.G.
26.1 99.7 155.7 At3g49940 824156 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.7 99.7 35.6 At5g44460 834473 calcium-binding protein, putative F:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOB O.I. C.G. H.G.
25.4 99.6 12.1 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
25.3 99.6 17.1 At5g05900 830475 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
24.9 99.6 39.1 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
24.7 99.6 141.8 At4g14010 827037 RALFL32 (ralf-like 32) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
23.6 99.6 74.5 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
23.2 99.6 97.8 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
22.9 99.6 78.6 At3g21510 821705 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
22.9 99.6 30.5 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
22.7 99.6 28.1 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
22.6 99.6 16.0 At5g43690 834389 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
21.7 99.6 30.0 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins O.I. C.G. H.G.
21.7 99.6 23.2 At5g45460 834582 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.6 99.6 249.7 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV O.I. C.G. H.G.
21.4 99.6 73.0 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
21.4 99.6 49.5 At4g08780 826448 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM O.I. C.G. H.G.
21.1 99.6 18.3 At4g40070 830170 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
21.0 99.6 73.3 At1g22885 838895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.9 99.6 158.2 At4g30670 829190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.9 99.6 73.2 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
20.7 99.6 40.1 At4g14580 827106 CIPK4 (CBL-interacting protein kinase 4) CBL-interacting protein kinase O.I. C.G. H.G.
20.7 99.6 10.3 At1g55430 841990 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
20.6 99.6 25.0 At1g44050 841006 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
20.4 99.6 226.4 At3g13610 820564 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
20.3 99.6 127.2 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
20.3 99.6 70.2 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.0 99.6 22.3 At3g11370 820309 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
20.0 99.6 13.6 At4g19980 827742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
19.8 99.6 241.7 At2g19760 816495 PRF1 (PROFILIN 1) first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues. O.I. C.G. H.G.
19.8 99.6 34.2 At1g70690 843406 HWI1 (HOPW1-1-INDUCED GENE1) Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. C.G. H.G.
19.7 99.6 221.1 At5g43780 834400 APS4 sulfate adenylyltransferase, ATP sulfurylase O.I. C.G. H.G.
19.7 99.6 75.4 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. O.I. C.G. H.G.
19.6 99.6 27.9 At1g65520 842864 ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1) encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation O.I. C.G. H.G.
19.4 99.6 109.1 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
19.4 99.6 21.3 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
19.4 99.6 16.9 At4g10550 826647 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
19.3 99.6 234.1 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
19.2 99.6 80.2 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
19.1 99.6 366.6 At5g64100 836531 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFO O.I. C.G. H.G.
19.1 99.6 70.2 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
890.2	100.0	323.6	At4g19750	827719	glycosyl hydrolase family 18 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA	O.I.	C.G.	H.G.
325.8	100.0	126.5	At5g14650	831317	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
244.6	100.0	74.0	At1g65680	842879	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
194.2	100.0	146.8	At5g22555	832318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
182.6	100.0	342.3	At2g19970	816516	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO	O.I.	C.G.	H.G.
175.8	100.0	38.4	At2g02580	814788	CYP71B9	member of CYP71B	O.I.	C.G.	H.G.
163.3	99.9	254.9	At2g30670	817617	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
121.7	99.9	211.4	At2g19990	816518	PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)	Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.	O.I.	C.G.	H.G.
100.3	99.9	110.5	At3g50350	824197	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
98.1	99.9	98.2	At5g41280	834129	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
83.4	99.9	168.7	At5g39110	833904	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
80.1	99.9	142.2	At3g03670	821193	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB	O.I.	C.G.	H.G.
77.4	99.9	36.9	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
73.5	99.9	96.9	At5g38910	833883	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
72.2	99.9	38.1	At2g30660	817616	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	F:catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
71.8	99.9	421.8	At4g30140	829137	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
71.1	99.9	163.6	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
70.5	99.9	142.5	At1g29020	839776	calcium-binding EF hand family protein	F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF	O.I.	C.G.	H.G.
69.6	99.9	36.3	At3g46270	823772	receptor protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
69.0	99.9	134.9	At5g38930	833885	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO	O.I.	C.G.	H.G.
68.1	99.9	41.4	At3g51350	824298	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV	O.I.	C.G.	H.G.
61.1	99.8	66.6	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
61.0	99.8	63.0	At4g35150	829667	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO	O.I.	C.G.	H.G.
58.9	99.8	127.2	At5g45380	834574	sodium:solute symporter family protein	F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP	O.I.	C.G.	H.G.
57.1	99.8	175.6	At1g67750	843100	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
51.7	99.8	210.5	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
47.0	99.8	51.6	At1g21890	838791	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAM	O.I.	C.G.	H.G.
46.0	99.8	188.2	At4g14630	827113	GLP9 (GERMIN-LIKE PROTEIN 9)	germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.	O.I.	C.G.	H.G.
44.0	99.8	21.3	At3g32040	822957	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV	O.I.	C.G.	H.G.
41.8	99.8	46.9	At2g35270	818094	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
41.5	99.8	27.9	At2g45550	819163	CYP76C4	member of CYP76C	O.I.	C.G.	H.G.
40.7	99.8	73.2	At5g45440	834580	disease resistance protein-related	F:ATP binding;P:apoptosis;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
38.9	99.8	432.2	At4g15390	827205	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
38.8	99.8	136.9	At3g23190	821897	lesion inducing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
36.8	99.7	365.5	At3g54040	824571	photoassimilate-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
36.5	99.7	80.6	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.9	99.7	71.1	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
33.3	99.7	404.9	At2g38380	818419	peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E	F:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:plant-type cell wall;PFO	O.I.	C.G.	H.G.
32.9	99.7	34.4	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
32.5	99.7	212.8	At3g02910	821189	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA	O.I.	C.G.	H.G.
32.0	99.7	131.9	At3g13650	820569	disease resistance response	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
31.0	99.7	259.9	At1g44800	841044	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
30.9	99.7	67.1	At5g23530	832418	AtCXE18 (Arabidopsis thaliana carboxyesterase 18)	F:carboxylesterase activity;P:metabolic process;C:unknown;BOFPMAV	O.I.	C.G.	H.G.
30.5	99.7	95.5	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
30.5	99.7	24.4	At2g21900	816726	WRKY59	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
30.4	99.7	124.8	At4g22610	828357	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
30.0	99.7	99.9	At1g67030	843022	ZFP6 (ZINC FINGER PROTEIN 6)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
29.8	99.7	68.5	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.4	99.7	11.6	At1g78360	844172	ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
29.2	99.7	139.9	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.9	99.7	80.3	At2g32270	817787	ZIP3	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	O.I.	C.G.	H.G.
28.7	99.7	250.1	At4g38080	829964	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA	O.I.	C.G.	H.G.
28.7	99.7	22.9	At3g61400	825312	2-oxoglutarate-dependent dioxygenase, putative	1-aminocyclopropane-1-carboxylate oxidase-like protein	O.I.	C.G.	H.G.
28.6	99.7	52.9	At3g12230	820403	scpl14 (serine carboxypeptidase-like 14)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
28.4	99.7	65.6	At4g37430	829897	CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)	Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.	O.I.	C.G.	H.G.
28.2	99.7	29.9	At3g47040	823857	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM	O.I.	C.G.	H.G.
27.2	99.7	18.4	At3g47050	823858	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAM	O.I.	C.G.	H.G.
27.1	99.7	16.6	At2g47560	819369	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
26.9	99.7	28.2	At3g62780	825453	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVFB	O.I.	C.G.	H.G.
26.1	99.7	155.7	At3g49940	824156	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.7	99.7	35.6	At5g44460	834473	calcium-binding protein, putative	F:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOB	O.I.	C.G.	H.G.
25.4	99.6	12.1	At4g24180	828519	-	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
25.3	99.6	17.1	At5g05900	830475	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
24.9	99.6	39.1	At2g42350	818836	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
24.7	99.6	141.8	At4g14010	827037	RALFL32 (ralf-like 32)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
23.6	99.6	74.5	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
23.2	99.6	97.8	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
22.9	99.6	78.6	At3g21510	821705	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
22.9	99.6	30.5	At5g22890	832353	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
22.7	99.6	28.1	At5g45080	834539	AtPP2-A6 (Phloem protein 2-A6)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
22.6	99.6	16.0	At5g43690	834389	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
21.7	99.6	30.0	At3g27070	822325	TOM20-1 (translocase outer membrane 20-1)	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	O.I.	C.G.	H.G.
21.7	99.6	23.2	At5g45460	834582	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.6	99.6	249.7	At2g43590	818961	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	O.I.	C.G.	H.G.
21.4	99.6	73.0	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
21.4	99.6	49.5	At4g08780	826448	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM	O.I.	C.G.	H.G.
21.1	99.6	18.3	At4g40070	830170	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
21.0	99.6	73.3	At1g22885	838895	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.9	99.6	158.2	At4g30670	829190	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.9	99.6	73.2	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
20.7	99.6	40.1	At4g14580	827106	CIPK4 (CBL-interacting protein kinase 4)	CBL-interacting protein kinase	O.I.	C.G.	H.G.
20.7	99.6	10.3	At1g55430	841990	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
20.6	99.6	25.0	At1g44050	841006	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
20.4	99.6	226.4	At3g13610	820564	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
20.3	99.6	127.2	At2g18370	816352	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
20.3	99.6	70.2	At1g49310	841354	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.0	99.6	22.3	At3g11370	820309	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
20.0	99.6	13.6	At4g19980	827742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
19.8	99.6	241.7	At2g19760	816495	PRF1 (PROFILIN 1)	first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues.	O.I.	C.G.	H.G.
19.8	99.6	34.2	At1g70690	843406	HWI1 (HOPW1-1-INDUCED GENE1)	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	C.G.	H.G.
19.7	99.6	221.1	At5g43780	834400	APS4	sulfate adenylyltransferase, ATP sulfurylase	O.I.	C.G.	H.G.
19.7	99.6	75.4	At5g56080	835707	NAS2 (NICOTIANAMINE SYNTHASE 2)	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	O.I.	C.G.	H.G.
19.6	99.6	27.9	At1g65520	842864	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation	O.I.	C.G.	H.G.
19.4	99.6	109.1	At1g64590	842767	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
19.4	99.6	21.3	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
19.4	99.6	16.9	At4g10550	826647	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
19.3	99.6	234.1	At4g33720	829514	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
19.2	99.6	80.2	At4g20390	827787	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
19.1	99.6	366.6	At5g64100	836531	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFO	O.I.	C.G.	H.G.
19.1	99.6	70.2	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM184561
Assay name	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184561 Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184561

Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root