CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184556

Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3953.5 100.0 91.7 At3g32250 3769261 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
3551.6 100.0 77.9 At1g52020 3767439 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
3200.8 100.0 72.8 At5g51580 835232 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
3153.3 100.0 87.9 At4g20470 827795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2973.7 100.0 95.2 At4g00690 828036 ULP1B (UB-LIKE PROTEASE 1B) F:cysteine-type peptidase activity;P:proteolysis;C:chloroplast;MPFOV O.I. C.G. H.G.
2872.3 100.0 78.2 At4g04165 3770472 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2756.5 100.0 56.8 At4g09860 826575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2650.6 100.0 57.4 At4g07700 3770342 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2344.8 100.0 171.4 At4g05350 825883 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
2267.7 100.0 72.1 At4g18860 827620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2258.9 100.0 42.8 At2g24780 817015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2161.9 100.0 57.6 At1g36030 840506 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2152.2 100.0 67.4 At2g10370 815496 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2147.0 100.0 73.1 At2g21920 816728 - F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
2118.2 100.0 43.4 At3g30740 3769121 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2070.6 100.0 58.5 At5g37110 833682 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2053.9 100.0 18.9 At2g15190 3768611 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2029.5 100.0 76.4 At5g07480 830640 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
2017.6 100.0 73.3 At5g52130 835289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2006.5 100.0 118.1 At3g30843 822865 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1978.3 100.0 42.3 At4g09930 826582 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBPFVA O.I. C.G. H.G.
1959.0 100.0 71.0 At5g41540 834156 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
1939.0 100.0 77.6 At1g32040 840095 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1901.5 100.0 96.6 At1g33540 840248 scpl18 (serine carboxypeptidase-like 18) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
1887.4 100.0 78.5 At5g07380 830629 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
1875.8 100.0 69.2 At4g08640 826429 ATP binding / protein binding F:protein binding, ATP binding;P:cellular protein metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
1869.9 100.0 32.8 At3g30190 822712 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1850.8 100.0 55.0 At1g63590 842664 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1837.0 100.0 67.0 At2g19630 816482 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1827.2 100.0 55.7 At2g07520 815325 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1761.5 100.0 47.1 At5g56070 835705 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1746.3 100.0 61.1 At2g25780 817120 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1714.2 100.0 989.1 At1g36540 3767012 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1708.1 100.0 71.1 At4g03740 825675 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1701.8 100.0 75.1 At4g37840 829940 HKL3 (HEXOKINASE-LIKE 3) Encodes a putative hexokinase. O.I. C.G. H.G.
1697.0 100.0 65.3 At1g06225 837132 CLE3 (CLAVATA3/ESR-RELATED 3) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. O.I. C.G. H.G.
1679.7 100.0 45.7 At1g42393 2745797 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1673.7 100.0 40.4 At3g42340 823227 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1645.7 100.0 40.9 At1g53970 841835 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
1635.5 100.0 59.5 At1g54420 841884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPM O.I. C.G. H.G.
1631.5 100.0 62.1 At5g37090 833680 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1623.5 100.0 72.7 At5g40070 834004 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFO O.I. C.G. H.G.
1617.0 100.0 70.8 At3g18700 821401 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
1590.4 100.0 25.6 At3g45380 823676 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1570.6 100.0 96.5 At4g26920 828799 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1527.4 100.0 92.6 At5g09950 830856 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POFMB O.I. C.G. H.G.
1523.6 100.0 48.3 At4g03680 825668 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1514.0 100.0 32.9 At2g10630 3767858 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1510.2 100.0 62.5 At4g04230 3770148 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1509.9 100.0 57.3 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
1492.5 100.0 79.4 At3g10830 820252 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1463.4 100.0 59.1 At1g05800 837089 DGL (DONGLE) Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues. O.I. C.G. H.G.
1461.4 100.0 61.9 At3g31390 3769189 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1455.7 100.0 71.4 At5g32630 3771080 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1437.8 100.0 64.5 At3g12420 820421 nucleic acid binding F:nucleic acid binding;P:unknown;C:unknown O.I. C.G. H.G.
1429.3 100.0 38.5 At2g17210 816226 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB O.I. C.G. H.G.
1417.2 100.0 48.8 At1g72600 843592 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFOBAV O.I. C.G. H.G.
1416.0 100.0 47.3 At2g01920 814723 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1386.2 100.0 29.9 At1g43880 840984 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1360.0 100.0 118.2 At5g01080 831873 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
1354.5 100.0 140.5 At5g17370 831603 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFPOB O.I. C.G. H.G.
1345.8 100.0 72.4 At3g42550 823265 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. C.G. H.G.
1338.1 100.0 71.3 At1g66930 843011 serine/threonine protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
1337.7 100.0 87.6 At3g46020 823745 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
1330.9 100.0 56.3 At2g11120 3768369 transposable element gene similarity to putative Athila retroelement ORF1 protein O.I. C.G. H.G.
1309.4 100.0 84.0 At5g51930 835268 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
1307.4 100.0 96.8 At1g78750 844211 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
1279.4 100.0 68.4 At1g27610 839653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
1265.0 100.0 53.0 At1g49015 841325 eukaryotic translation initiation factor-related F:RNA binding, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
1254.3 100.0 125.1 At2g18820 3768266 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1242.9 100.0 40.1 At1g35143 840400 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1242.4 100.0 85.6 At2g16610 3768152 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1242.0 100.0 45.9 At4g13760 827010 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
1237.0 100.0 58.1 At1g44980 841063 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
1235.1 100.0 65.6 At4g36170 829774 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1234.8 100.0 18.0 At1g43060 3767287 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1233.4 100.0 61.6 At4g07740 826252 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1209.6 100.0 45.0 At3g60940 825265 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
1209.0 100.0 109.4 At2g17770 816286 ATBZIP27 Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT. O.I. C.G. H.G.
1207.7 100.0 27.5 At4g08050 3770259 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1197.9 100.0 65.6 At1g24420 839058 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
1197.9 100.0 56.9 At4g28670 828985 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
1196.8 100.0 44.6 At4g35820 829736 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV O.I. C.G. H.G.
1196.3 100.0 51.4 At4g15320 827198 ATCSLB06 (CELLULOSE SYNTHASE LIKE B6) encodes a gene similar to cellulose synthase O.I. C.G. H.G.
1193.5 100.0 86.2 At1g59680 842259 EDA1 (embryo sac development arrest 1) F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P O.I. C.G. H.G.
1192.9 100.0 32.0 At2g27570 817303 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPBOF O.I. C.G. H.G.
1190.0 100.0 44.7 At5g04210 830300 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
1188.3 100.0 80.4 At1g11470 837689 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
1188.0 100.0 77.1 At5g35770 833556 SAP (STERILE APETALA) A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development. O.I. C.G. H.G.
1184.3 100.0 77.4 At1g49370 3767414 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1184.0 100.0 54.1 At1g62090 3767607 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1183.1 100.0 60.4 At1g32020 840093 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1174.6 100.0 79.2 At3g07920 819983 translation initiation factor F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOAFPV O.I. C.G. H.G.
1163.5 100.0 48.8 At1g63280 842634 serpin-related / serine protease inhibitor-related F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:unknown;MPBOAV O.I. C.G. H.G.
1159.5 100.0 27.5 At4g07840 3770284 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1159.0 100.0 72.2 At3g22710 821842 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1158.2 100.0 28.4 At3g59860 3769741 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1154.1 100.0 88.4 At1g12700 837825 helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein F:helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:unknown;PBOMFAV O.I. C.G. H.G.
1137.6 100.0 48.1 At1g23680 838978 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1120.8 100.0 81.9 At5g63540 836473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
3953.5	100.0	91.7	At3g32250	3769261	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
3551.6	100.0	77.9	At1g52020	3767439	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
3200.8	100.0	72.8	At5g51580	835232	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
3153.3	100.0	87.9	At4g20470	827795	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2973.7	100.0	95.2	At4g00690	828036	ULP1B (UB-LIKE PROTEASE 1B)	F:cysteine-type peptidase activity;P:proteolysis;C:chloroplast;MPFOV	O.I.	C.G.	H.G.
2872.3	100.0	78.2	At4g04165	3770472	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2756.5	100.0	56.8	At4g09860	826575	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2650.6	100.0	57.4	At4g07700	3770342	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2344.8	100.0	171.4	At4g05350	825883	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
2267.7	100.0	72.1	At4g18860	827620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2258.9	100.0	42.8	At2g24780	817015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2161.9	100.0	57.6	At1g36030	840506	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2152.2	100.0	67.4	At2g10370	815496	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2147.0	100.0	73.1	At2g21920	816728	-	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
2118.2	100.0	43.4	At3g30740	3769121	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2070.6	100.0	58.5	At5g37110	833682	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2053.9	100.0	18.9	At2g15190	3768611	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2029.5	100.0	76.4	At5g07480	830640	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
2017.6	100.0	73.3	At5g52130	835289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2006.5	100.0	118.1	At3g30843	822865	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1978.3	100.0	42.3	At4g09930	826582	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBPFVA	O.I.	C.G.	H.G.
1959.0	100.0	71.0	At5g41540	834156	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
1939.0	100.0	77.6	At1g32040	840095	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1901.5	100.0	96.6	At1g33540	840248	scpl18 (serine carboxypeptidase-like 18)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
1887.4	100.0	78.5	At5g07380	830629	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
1875.8	100.0	69.2	At4g08640	826429	ATP binding / protein binding	F:protein binding, ATP binding;P:cellular protein metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
1869.9	100.0	32.8	At3g30190	822712	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1850.8	100.0	55.0	At1g63590	842664	receptor-like protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1837.0	100.0	67.0	At2g19630	816482	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1827.2	100.0	55.7	At2g07520	815325	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1761.5	100.0	47.1	At5g56070	835705	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1746.3	100.0	61.1	At2g25780	817120	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1714.2	100.0	989.1	At1g36540	3767012	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1708.1	100.0	71.1	At4g03740	825675	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1701.8	100.0	75.1	At4g37840	829940	HKL3 (HEXOKINASE-LIKE 3)	Encodes a putative hexokinase.	O.I.	C.G.	H.G.
1697.0	100.0	65.3	At1g06225	837132	CLE3 (CLAVATA3/ESR-RELATED 3)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.	O.I.	C.G.	H.G.
1679.7	100.0	45.7	At1g42393	2745797	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1673.7	100.0	40.4	At3g42340	823227	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1645.7	100.0	40.9	At1g53970	841835	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
1635.5	100.0	59.5	At1g54420	841884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPM	O.I.	C.G.	H.G.
1631.5	100.0	62.1	At5g37090	833680	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1623.5	100.0	72.7	At5g40070	834004	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFO	O.I.	C.G.	H.G.
1617.0	100.0	70.8	At3g18700	821401	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
1590.4	100.0	25.6	At3g45380	823676	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1570.6	100.0	96.5	At4g26920	828799	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1527.4	100.0	92.6	At5g09950	830856	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:unknown;POFMB	O.I.	C.G.	H.G.
1523.6	100.0	48.3	At4g03680	825668	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1514.0	100.0	32.9	At2g10630	3767858	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1510.2	100.0	62.5	At4g04230	3770148	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1509.9	100.0	57.3	At4g11480	826753	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
1492.5	100.0	79.4	At3g10830	820252	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1463.4	100.0	59.1	At1g05800	837089	DGL (DONGLE)	Encodes a galactolipase. Located in the chloroplast. Involved in the initial step of jasmonic acid biosynthesis. Expressed in vegetative tissues and is necessary for the biosynthesis of basal-level JAs in vegetative tissues.	O.I.	C.G.	H.G.
1461.4	100.0	61.9	At3g31390	3769189	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1455.7	100.0	71.4	At5g32630	3771080	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1437.8	100.0	64.5	At3g12420	820421	nucleic acid binding	F:nucleic acid binding;P:unknown;C:unknown	O.I.	C.G.	H.G.
1429.3	100.0	38.5	At2g17210	816226	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB	O.I.	C.G.	H.G.
1417.2	100.0	48.8	At1g72600	843592	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFOBAV	O.I.	C.G.	H.G.
1416.0	100.0	47.3	At2g01920	814723	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1386.2	100.0	29.9	At1g43880	840984	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1360.0	100.0	118.2	At5g01080	831873	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
1354.5	100.0	140.5	At5g17370	831603	WD-40 repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFPOB	O.I.	C.G.	H.G.
1345.8	100.0	72.4	At3g42550	823265	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
1338.1	100.0	71.3	At1g66930	843011	serine/threonine protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
1337.7	100.0	87.6	At3g46020	823745	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
1330.9	100.0	56.3	At2g11120	3768369	transposable element gene	similarity to putative Athila retroelement ORF1 protein	O.I.	C.G.	H.G.
1309.4	100.0	84.0	At5g51930	835268	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
1307.4	100.0	96.8	At1g78750	844211	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
1279.4	100.0	68.4	At1g27610	839653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
1265.0	100.0	53.0	At1g49015	841325	eukaryotic translation initiation factor-related	F:RNA binding, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
1254.3	100.0	125.1	At2g18820	3768266	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1242.9	100.0	40.1	At1g35143	840400	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1242.4	100.0	85.6	At2g16610	3768152	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1242.0	100.0	45.9	At4g13760	827010	polygalacturonase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
1237.0	100.0	58.1	At1g44980	841063	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
1235.1	100.0	65.6	At4g36170	829774	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1234.8	100.0	18.0	At1g43060	3767287	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1233.4	100.0	61.6	At4g07740	826252	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1209.6	100.0	45.0	At3g60940	825265	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
1209.0	100.0	109.4	At2g17770	816286	ATBZIP27	Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.	O.I.	C.G.	H.G.
1207.7	100.0	27.5	At4g08050	3770259	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1197.9	100.0	65.6	At1g24420	839058	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
1197.9	100.0	56.9	At4g28670	828985	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
1196.8	100.0	44.6	At4g35820	829736	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV	O.I.	C.G.	H.G.
1196.3	100.0	51.4	At4g15320	827198	ATCSLB06 (CELLULOSE SYNTHASE LIKE B6)	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
1193.5	100.0	86.2	At1g59680	842259	EDA1 (embryo sac development arrest 1)	F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1192.9	100.0	32.0	At2g27570	817303	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPBOF	O.I.	C.G.	H.G.
1190.0	100.0	44.7	At5g04210	830300	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
1188.3	100.0	80.4	At1g11470	837689	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
1188.0	100.0	77.1	At5g35770	833556	SAP (STERILE APETALA)	A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development.	O.I.	C.G.	H.G.
1184.3	100.0	77.4	At1g49370	3767414	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1184.0	100.0	54.1	At1g62090	3767607	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1183.1	100.0	60.4	At1g32020	840093	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1174.6	100.0	79.2	At3g07920	819983	translation initiation factor	F:translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOAFPV	O.I.	C.G.	H.G.
1163.5	100.0	48.8	At1g63280	842634	serpin-related / serine protease inhibitor-related	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:unknown;MPBOAV	O.I.	C.G.	H.G.
1159.5	100.0	27.5	At4g07840	3770284	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1159.0	100.0	72.2	At3g22710	821842	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1158.2	100.0	28.4	At3g59860	3769741	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1154.1	100.0	88.4	At1g12700	837825	helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein	F:helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:unknown;PBOMFAV	O.I.	C.G.	H.G.
1137.6	100.0	48.1	At1g23680	838978	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1120.8	100.0	81.9	At5g63540	836473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.

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GSM ID	GSM184556
Assay name	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184556 Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184556

Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root