CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184555

Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
238.4 100.0 162.6 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
139.0 99.9 133.2 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
95.7 99.9 41.1 At4g31970 829327 CYP82C2 member of CYP82C O.I. C.G. H.G.
94.4 99.9 162.9 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
77.1 99.9 3.8 At1g32670 840161 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
76.4 99.9 118.3 At3g47510 823905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
76.3 99.9 6.1 At2g10490 3768467 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
73.6 99.9 11.6 At1g67000 843018 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
73.6 99.9 4.4 At1g43060 3767287 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
72.8 99.9 42.3 At1g36640 840572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
72.2 99.9 107.5 At2g30750 817626 CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12) putative cytochrome P450 O.I. C.G. H.G.
63.8 99.8 15.0 At5g32630 3771080 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
62.2 99.8 25.3 At1g61500 842444 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
57.5 99.8 9.0 At5g40750 834075 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
57.0 99.8 128.2 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF O.I. C.G. H.G.
56.5 99.8 161.7 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). O.I. C.G. H.G.
55.2 99.8 115.8 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
52.4 99.8 131.9 At2g18210 816336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
50.0 99.8 26.6 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
49.9 99.8 171.3 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
49.9 99.8 116.2 At3g21510 821705 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
49.5 99.8 62.9 At5g04080 830287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
48.3 99.8 17.4 At5g35690 833542 - F:unknown;P:unknown;C:cellular_component unknown;FOPMBV O.I. C.G. H.G.
47.3 99.8 12.2 At5g12380 831113 annexin, putative F:calcium-dependent phospholipid binding, calcium ion binding;P:unknown;C:unknown;MPOF O.I. C.G. H.G.
45.8 99.8 10.1 At5g52720 835349 metal ion binding F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
45.5 99.8 130.9 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
43.2 99.8 121.2 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.1 99.8 81.4 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
42.0 99.8 167.4 At5g43580 834378 serine-type endopeptidase inhibitor Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
40.3 99.8 53.6 At1g23120 838920 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
39.9 99.8 99.2 At4g34600 829612 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
38.7 99.8 9.5 At4g03830 825690 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA O.I. C.G. H.G.
38.4 99.8 53.8 At1g64160 842720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
38.3 99.8 17.3 At5g65600 836686 legume lectin family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
38.3 99.8 10.6 At1g63560 842661 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.5 99.7 17.9 At1g72860 843617 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
33.4 99.7 18.1 At1g80590 844398 WRKY66 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
32.6 99.7 42.9 At1g26240 839165 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
31.1 99.7 20.2 At1g59730 842266 ATH7 (thioredoxin H-type 7) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
31.0 99.7 3.9 At4g08880 826465 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.5 99.7 23.6 At3g61400 825312 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein O.I. C.G. H.G.
30.2 99.7 30.5 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
28.7 99.7 5.5 At3g51210 824284 flavonol 3-sulfotransferase-related F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
28.1 99.7 16.6 At3g55790 824745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFV O.I. C.G. H.G.
28.0 99.7 4.4 At5g59580 836077 UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
27.3 99.7 30.7 At5g44350 834461 ethylene-responsive nuclear protein -related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
27.1 99.7 8.1 At3g47100 823863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
26.8 99.7 7.5 At4g19620 827704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.5 99.7 5.5 At4g09860 826575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.4 99.6 5.0 At2g01200 814648 IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32) Belongs to auxin inducible gene family. O.I. C.G. H.G.
25.3 99.6 77.5 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
24.9 99.6 9.7 At5g30470 3770969 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
24.8 99.6 7.2 At1g43040 840903 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
24.2 99.6 12.3 At1g59680 842259 EDA1 (embryo sac development arrest 1) F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P O.I. C.G. H.G.
23.7 99.6 8.4 At4g05280 825876 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
23.7 99.6 5.7 At4g03480 827906 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
23.5 99.6 10.8 At1g09170 837437 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPB O.I. C.G. H.G.
23.4 99.6 1039.9 At5g42980 834313 ATTRX3 (THIOREDOXIN 3) encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. O.I. C.G. H.G.
23.3 99.6 124.8 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.3 99.6 121.3 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.3 99.6 14.7 At2g22630 816794 AGL17 (agamous-like 17) Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression. O.I. C.G. H.G.
23.2 99.6 12.7 At2g38100 818388 proton-dependent oligopeptide transport (POT) family protein F:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOF O.I. C.G. H.G.
23.1 99.6 7.5 At1g62090 3767607 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
23.1 99.6 4.3 At2g24780 817015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.9 99.6 82.2 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
22.5 99.6 32.2 At3g45730 823715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
22.5 99.6 8.4 At5g26970 832755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
22.4 99.6 28.4 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
22.3 99.6 223.5 At1g15270 838094 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPO O.I. C.G. H.G.
22.2 99.6 13.3 At1g74820 843821 cupin family protein F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
22.0 99.6 64.3 At1g61820 842479 BGLU46 (BETA GLUCOSIDASE 46) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
21.9 99.6 607.6 At2g40205 818612 60S ribosomal protein L41 (RPL41C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFO O.I. C.G. H.G.
21.9 99.6 43.5 At4g13235 826940 EDA21 (embryo sac development arrest 21) Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
21.9 99.6 40.1 At1g26390 839181 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
21.9 99.6 7.8 At5g02350 831920 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO O.I. C.G. H.G.
21.7 99.6 17.9 At2g22810 816812 ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4) key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA). O.I. C.G. H.G.
21.7 99.6 13.7 At5g22550 832317 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.4 99.6 230.7 At5g58375 835950 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.3 99.6 10.2 At2g36550 818228 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVO O.I. C.G. H.G.
20.7 99.6 16.1 At1g55940 842045 CYP708A1 member of CYP708A O.I. C.G. H.G.
20.6 99.6 15.6 At1g26410 839183 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAM O.I. C.G. H.G.
20.6 99.6 5.6 At2g11130 3768370 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
20.4 99.6 38.5 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
20.4 99.6 20.9 At5g22530 832314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
20.4 99.6 7.2 At4g12350 826844 MYB42 (myb domain protein 42) Encodes a putative transcription factor (MYB42). O.I. C.G. H.G.
20.2 99.6 539.8 At2g23120 816844 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
20.2 99.6 516.1 At1g45145 841082 ATTRX5 encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. O.I. C.G. H.G.
20.2 99.6 28.9 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins O.I. C.G. H.G.
20.1 99.6 58.0 At5g13080 831147 WRKY75 WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation. O.I. C.G. H.G.
19.8 99.6 234.0 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
19.8 99.6 16.1 At5g65320 836657 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF O.I. C.G. H.G.
19.7 99.6 33.5 At1g68450 843174 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
19.7 99.6 6.2 At5g36810 833648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
19.6 99.6 12.4 At2g48090 819421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
19.4 99.6 11.4 At1g49260 841350 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.3 99.6 18.3 At2g29480 817497 ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
19.1 99.6 7.0 At4g04230 3770148 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
18.8 99.5 443.4 At3g07230 819912 wound-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.7 99.5 10.1 At1g36970 840606 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
18.5 99.5 12.0 At1g10890 837632 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
238.4	100.0	162.6	At5g22555	832318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
139.0	99.9	133.2	At5g38910	833883	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
95.7	99.9	41.1	At4g31970	829327	CYP82C2	member of CYP82C	O.I.	C.G.	H.G.
94.4	99.9	162.9	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
77.1	99.9	3.8	At1g32670	840161	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
76.4	99.9	118.3	At3g47510	823905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
76.3	99.9	6.1	At2g10490	3768467	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
73.6	99.9	11.6	At1g67000	843018	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
73.6	99.9	4.4	At1g43060	3767287	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
72.8	99.9	42.3	At1g36640	840572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
72.2	99.9	107.5	At2g30750	817626	CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)	putative cytochrome P450	O.I.	C.G.	H.G.
63.8	99.8	15.0	At5g32630	3771080	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
62.2	99.8	25.3	At1g61500	842444	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
57.5	99.8	9.0	At5g40750	834075	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
57.0	99.8	128.2	At1g29020	839776	calcium-binding EF hand family protein	F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF	O.I.	C.G.	H.G.
56.5	99.8	161.7	At1g18970	838478	GLP4 (GERMIN-LIKE PROTEIN 4)	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	O.I.	C.G.	H.G.
55.2	99.8	115.8	At1g49310	841354	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
52.4	99.8	131.9	At2g18210	816336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
50.0	99.8	26.6	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
49.9	99.8	171.3	At2g22860	816817	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
49.9	99.8	116.2	At3g21510	821705	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
49.5	99.8	62.9	At5g04080	830287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
48.3	99.8	17.4	At5g35690	833542	-	F:unknown;P:unknown;C:cellular_component unknown;FOPMBV	O.I.	C.G.	H.G.
47.3	99.8	12.2	At5g12380	831113	annexin, putative	F:calcium-dependent phospholipid binding, calcium ion binding;P:unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
45.8	99.8	10.1	At5g52720	835349	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
45.5	99.8	130.9	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
43.2	99.8	121.2	At2g44010	819006	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.1	99.8	81.4	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.0	99.8	167.4	At5g43580	834378	serine-type endopeptidase inhibitor	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
40.3	99.8	53.6	At1g23120	838920	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.9	99.8	99.2	At4g34600	829612	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
38.7	99.8	9.5	At4g03830	825690	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA	O.I.	C.G.	H.G.
38.4	99.8	53.8	At1g64160	842720	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
38.3	99.8	17.3	At5g65600	836686	legume lectin family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
38.3	99.8	10.6	At1g63560	842661	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.5	99.7	17.9	At1g72860	843617	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
33.4	99.7	18.1	At1g80590	844398	WRKY66	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
32.6	99.7	42.9	At1g26240	839165	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
31.1	99.7	20.2	At1g59730	842266	ATH7 (thioredoxin H-type 7)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
31.0	99.7	3.9	At4g08880	826465	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.5	99.7	23.6	At3g61400	825312	2-oxoglutarate-dependent dioxygenase, putative	1-aminocyclopropane-1-carboxylate oxidase-like protein	O.I.	C.G.	H.G.
30.2	99.7	30.5	At5g52670	835344	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.7	99.7	5.5	At3g51210	824284	flavonol 3-sulfotransferase-related	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
28.1	99.7	16.6	At3g55790	824745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFV	O.I.	C.G.	H.G.
28.0	99.7	4.4	At5g59580	836077	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
27.3	99.7	30.7	At5g44350	834461	ethylene-responsive nuclear protein -related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
27.1	99.7	8.1	At3g47100	823863	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
26.8	99.7	7.5	At4g19620	827704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.5	99.7	5.5	At4g09860	826575	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.4	99.6	5.0	At2g01200	814648	IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32)	Belongs to auxin inducible gene family.	O.I.	C.G.	H.G.
25.3	99.6	77.5	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
24.9	99.6	9.7	At5g30470	3770969	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
24.8	99.6	7.2	At1g43040	840903	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
24.2	99.6	12.3	At1g59680	842259	EDA1 (embryo sac development arrest 1)	F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.7	99.6	8.4	At4g05280	825876	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
23.7	99.6	5.7	At4g03480	827906	protein binding	F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
23.5	99.6	10.8	At1g09170	837437	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPB	O.I.	C.G.	H.G.
23.4	99.6	1039.9	At5g42980	834313	ATTRX3 (THIOREDOXIN 3)	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	O.I.	C.G.	H.G.
23.3	99.6	124.8	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.3	99.6	121.3	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.3	99.6	14.7	At2g22630	816794	AGL17 (agamous-like 17)	Encodes a MADs domain containing protein involved in promoting flowering. Loss of function mutations show delayed flowering in long days and reduced levels of LFY and AP1 expression.	O.I.	C.G.	H.G.
23.2	99.6	12.7	At2g38100	818388	proton-dependent oligopeptide transport (POT) family protein	F:uracil transmembrane transporter activity, amino acid transmembrane transporter activity;P:oligopeptide transport;C:endomembrane system, membrane;PBMOF	O.I.	C.G.	H.G.
23.1	99.6	7.5	At1g62090	3767607	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
23.1	99.6	4.3	At2g24780	817015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.9	99.6	82.2	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.5	99.6	32.2	At3g45730	823715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
22.5	99.6	8.4	At5g26970	832755	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
22.4	99.6	28.4	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
22.3	99.6	223.5	At1g15270	838094	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPO	O.I.	C.G.	H.G.
22.2	99.6	13.3	At1g74820	843821	cupin family protein	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
22.0	99.6	64.3	At1g61820	842479	BGLU46 (BETA GLUCOSIDASE 46)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
21.9	99.6	607.6	At2g40205	818612	60S ribosomal protein L41 (RPL41C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFO	O.I.	C.G.	H.G.
21.9	99.6	43.5	At4g13235	826940	EDA21 (embryo sac development arrest 21)	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
21.9	99.6	40.1	At1g26390	839181	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
21.9	99.6	7.8	At5g02350	831920	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
21.7	99.6	17.9	At2g22810	816812	ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4)	key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA).	O.I.	C.G.	H.G.
21.7	99.6	13.7	At5g22550	832317	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.4	99.6	230.7	At5g58375	835950	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.3	99.6	10.2	At2g36550	818228	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVO	O.I.	C.G.	H.G.
20.7	99.6	16.1	At1g55940	842045	CYP708A1	member of CYP708A	O.I.	C.G.	H.G.
20.6	99.6	15.6	At1g26410	839183	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAM	O.I.	C.G.	H.G.
20.6	99.6	5.6	At2g11130	3768370	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
20.4	99.6	38.5	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
20.4	99.6	20.9	At5g22530	832314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
20.4	99.6	7.2	At4g12350	826844	MYB42 (myb domain protein 42)	Encodes a putative transcription factor (MYB42).	O.I.	C.G.	H.G.
20.2	99.6	539.8	At2g23120	816844	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
20.2	99.6	516.1	At1g45145	841082	ATTRX5	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	O.I.	C.G.	H.G.
20.2	99.6	28.9	At3g27070	822325	TOM20-1 (translocase outer membrane 20-1)	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	O.I.	C.G.	H.G.
20.1	99.6	58.0	At5g13080	831147	WRKY75	WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation.	O.I.	C.G.	H.G.
19.8	99.6	234.0	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
19.8	99.6	16.1	At5g65320	836657	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF	O.I.	C.G.	H.G.
19.7	99.6	33.5	At1g68450	843174	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
19.7	99.6	6.2	At5g36810	833648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
19.6	99.6	12.4	At2g48090	819421	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
19.4	99.6	11.4	At1g49260	841350	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.3	99.6	18.3	At2g29480	817497	ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
19.1	99.6	7.0	At4g04230	3770148	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
18.8	99.5	443.4	At3g07230	819912	wound-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.7	99.5	10.1	At1g36970	840606	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
18.5	99.5	12.0	At1g10890	837632	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.

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GSM ID	GSM184555
Assay name	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184555 Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184555

Assay name Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root