CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184552

Assay name Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
371.6 100.0 40.9 At3g32150 822979 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMF O.I. C.G. H.G.
272.1 100.0 25.2 At1g77790 844116 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POF O.I. C.G. H.G.
227.3 100.0 9.0 At2g12230 3768490 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
225.2 100.0 8.3 At1g26860 837037 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
224.3 100.0 14.6 At2g12920 3768702 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
216.6 100.0 14.4 At3g31410 822905 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
215.5 100.0 27.3 At1g56540 842107 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
194.6 100.0 40.3 At2g02580 814788 CYP71B9 member of CYP71B O.I. C.G. H.G.
185.7 100.0 10.3 At2g05270 815075 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
181.5 100.0 141.9 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
177.7 100.0 10.3 At1g32000 840091 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
173.6 100.0 37.4 At2g37780 818355 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
169.4 100.0 12.9 At2g10440 815503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV O.I. C.G. H.G.
164.0 99.9 9.5 At3g59260 825095 pirin, putative F:calmodulin binding;P:unknown;C:cellular_component unknown;BOFPMA O.I. C.G. H.G.
163.5 99.9 17.3 At5g65130 836637 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
161.4 99.9 25.2 At3g61120 825284 AGL13 (AGAMOUS-LIKE 13) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
156.8 99.9 33.9 At2g46915 819305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOM O.I. C.G. H.G.
156.0 99.9 18.7 At5g52720 835349 metal ion binding F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
149.7 99.9 13.2 At4g00960 827937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
149.3 99.9 10.2 At3g59860 3769741 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
145.5 99.9 30.0 At2g46840 819297 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
145.3 99.9 22.6 At2g03460 814875 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBO O.I. C.G. H.G.
144.9 99.9 27.1 At3g32060 3769238 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
143.9 99.9 15.0 At4g10880 826687 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
142.0 99.9 19.2 At3g13680 820576 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
136.4 99.9 39.1 At3g10580 820225 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
132.5 99.9 20.2 At2g07320 815302 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
131.5 99.9 16.5 At4g19620 827704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
131.3 99.9 13.1 At1g13540 837914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
131.1 99.9 18.6 At2g43270 818929 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
126.9 99.9 23.9 At5g01440 831886 insulin-degrading enzyme-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
126.6 99.9 25.0 At1g44090 841012 ATGA20OX5 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5) Encodes a gibberellin 20-oxidase. O.I. C.G. H.G.
126.1 99.9 95.7 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
126.1 99.9 29.5 At2g37730 818350 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
125.8 99.9 21.0 At3g27730 822395 RCK (ROCK-N-ROLLERS) DNA helicase required for interference-sensitive meiotic crossover events. O.I. C.G. H.G.
118.4 99.9 28.3 At5g44270 834450 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
118.2 99.9 19.5 At1g01200 839493 ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, nucleus, cell plate;MOFPBVA O.I. C.G. H.G.
118.0 99.9 22.2 At4g08740 826443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
117.0 99.9 14.1 At5g57400 835846 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
116.4 99.9 37.0 At3g43320 823411 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
116.3 99.9 6.3 At1g64020 842705 serpin-related / serine protease inhibitor-related F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
116.1 99.9 16.6 At5g43200 834338 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
114.6 99.9 40.2 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
111.9 99.9 29.2 At4g23970 828497 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
111.1 99.9 27.1 At1g69560 843292 MYB105 (myb domain protein 105) Encodes a putative transcription factor (MYB105). O.I. C.G. H.G.
110.2 99.9 20.3 At2g25030 3768249 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
109.2 99.9 24.9 At4g36105 829767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV O.I. C.G. H.G.
109.1 99.9 46.7 At2g22850 816816 AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF O.I. C.G. H.G.
109.1 99.9 26.1 At1g59680 842259 EDA1 (embryo sac development arrest 1) F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P O.I. C.G. H.G.
107.4 99.9 14.9 At2g11090 815577 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
107.2 99.9 36.4 At4g17785 827500 MYB39 (myb domain protein 39) Encodes a putative transcription factor (MYB39). O.I. C.G. H.G.
106.2 99.9 17.3 At4g17700 827491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
105.7 99.9 4.5 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
105.3 99.9 20.8 At5g35890 833575 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:anchored to membrane;P O.I. C.G. H.G.
105.0 99.9 18.3 At5g56800 835782 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
103.6 99.9 43.5 At3g46580 823811 MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5) Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. O.I. C.G. H.G.
103.6 99.9 13.3 At2g30760 817627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
103.4 99.9 24.1 At1g53810 3767451 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
103.1 99.9 17.3 At4g07720 3770346 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
103.1 99.9 15.5 At1g31260 840014 ZIP10 (ZINC TRANSPORTER 10 PRECURSOR) member of Fe(II) transporter isolog family O.I. C.G. H.G.
102.3 99.9 42.9 At2g46380 819246 unknown protein F:unknown;P:unknown;C:cellular_component unknown;POMB O.I. C.G. H.G.
102.3 99.9 13.9 At1g19390 838522 wall-associated kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
102.2 99.9 31.8 At4g11050 826706 AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3) F:carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
102.1 99.9 42.3 At5g07040 830595 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV O.I. C.G. H.G.
101.8 99.9 19.5 At5g06020 830489 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
101.7 99.9 16.6 At2g34210 817982 structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV O.I. C.G. H.G.
100.9 99.9 32.0 At5g38310 833813 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MP O.I. C.G. H.G.
99.5 99.9 12.4 At5g23640 832429 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
99.0 99.9 15.6 At4g23760 828476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
98.6 99.9 26.1 At2g36980 818272 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFAB O.I. C.G. H.G.
97.5 99.9 23.3 At4g01380 826657 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
97.2 99.9 17.6 At3g22040 821764 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
96.5 99.9 28.2 At3g29380 822598 transcription factor IIB (TFIIB) family protein F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:response to cadmium ion;C:transcription factor complex, nucleus;OAMFPV O.I. C.G. H.G.
96.3 99.9 14.6 At1g33320 840226 cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative F:pyridoxal phosphate binding, cystathionine gamma-synthase activity, catalytic activity;P:amino acid metabolic process, methionine biosynthetic process;C:unknown;OBFMPA O.I. C.G. H.G.
95.7 99.9 13.9 At3g05440 819709 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
94.9 99.9 7.2 At3g42400 823236 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
94.6 99.9 11.5 At5g40750 834075 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
93.7 99.9 29.4 At1g52950 841728 replication protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
93.7 99.9 20.5 At2g26950 817236 AtMYB104 (myb domain protein 104) Member of the R2R3 factor gene family. O.I. C.G. H.G.
92.3 99.9 19.6 At4g19580 827700 heat shock protein binding F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
92.2 99.9 14.5 At5g39390 833935 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
90.8 99.9 11.6 At3g26040 822201 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
90.1 99.9 12.8 At5g32600 833241 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
90.0 99.9 16.8 At2g44810 819090 DAD1 (DEFECTIVE ANTHER DEHISCENCE 1) Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis. O.I. C.G. H.G.
89.1 99.9 11.1 At3g25880 822183 auxin-resistance protein, putative F:binding, catalytic activity;P:response to auxin stimulus, metabolic process;C:cellular_component unknown;MFPO O.I. C.G. H.G.
89.1 99.9 8.1 At2g10660 3767861 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
89.0 99.9 16.6 At2g47150 819328 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
87.6 99.9 7.3 At2g10465 815506 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
86.6 99.9 29.1 At1g47465 3767381 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
86.2 99.9 18.4 At1g35480 3766947 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
86.1 99.9 17.2 At5g39700 833966 MYB89 (myb domain protein 89) Encodes a putative transcription factor (MYB89). O.I. C.G. H.G.
85.8 99.9 17.5 At2g12910 3768701 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
85.3 99.9 15.3 At4g13570 826990 HTA4 Encodes HTA4, a histone H2A protein. O.I. C.G. H.G.
83.8 99.9 12.0 At5g33380 833316 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
83.1 99.9 13.5 At4g03660 825666 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
82.8 99.9 10.4 At4g31260 829253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
82.7 99.9 12.0 At5g22990 832363 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
82.1 99.9 25.1 At5g01310 830940 basic helix-loop-helix (bHLH) family protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus, chloroplast;PMFBOV O.I. C.G. H.G.
81.8 99.9 234.1 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
81.1 99.9 22.7 At3g01900 821263 CYP94B2 member of CYP94B O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
371.6	100.0	40.9	At3g32150	822979	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMF	O.I.	C.G.	H.G.
272.1	100.0	25.2	At1g77790	844116	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POF	O.I.	C.G.	H.G.
227.3	100.0	9.0	At2g12230	3768490	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
225.2	100.0	8.3	At1g26860	837037	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
224.3	100.0	14.6	At2g12920	3768702	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
216.6	100.0	14.4	At3g31410	822905	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
215.5	100.0	27.3	At1g56540	842107	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
194.6	100.0	40.3	At2g02580	814788	CYP71B9	member of CYP71B	O.I.	C.G.	H.G.
185.7	100.0	10.3	At2g05270	815075	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
181.5	100.0	141.9	At5g22555	832318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
177.7	100.0	10.3	At1g32000	840091	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
173.6	100.0	37.4	At2g37780	818355	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
169.4	100.0	12.9	At2g10440	815503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV	O.I.	C.G.	H.G.
164.0	99.9	9.5	At3g59260	825095	pirin, putative	F:calmodulin binding;P:unknown;C:cellular_component unknown;BOFPMA	O.I.	C.G.	H.G.
163.5	99.9	17.3	At5g65130	836637	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
161.4	99.9	25.2	At3g61120	825284	AGL13 (AGAMOUS-LIKE 13)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
156.8	99.9	33.9	At2g46915	819305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOM	O.I.	C.G.	H.G.
156.0	99.9	18.7	At5g52720	835349	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
149.7	99.9	13.2	At4g00960	827937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
149.3	99.9	10.2	At3g59860	3769741	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
145.5	99.9	30.0	At2g46840	819297	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
145.3	99.9	22.6	At2g03460	814875	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBO	O.I.	C.G.	H.G.
144.9	99.9	27.1	At3g32060	3769238	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
143.9	99.9	15.0	At4g10880	826687	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
142.0	99.9	19.2	At3g13680	820576	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
136.4	99.9	39.1	At3g10580	820225	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
132.5	99.9	20.2	At2g07320	815302	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
131.5	99.9	16.5	At4g19620	827704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
131.3	99.9	13.1	At1g13540	837914	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
131.1	99.9	18.6	At2g43270	818929	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
126.9	99.9	23.9	At5g01440	831886	insulin-degrading enzyme-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
126.6	99.9	25.0	At1g44090	841012	ATGA20OX5 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5)	Encodes a gibberellin 20-oxidase.	O.I.	C.G.	H.G.
126.1	99.9	95.7	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
126.1	99.9	29.5	At2g37730	818350	fringe-related protein	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
125.8	99.9	21.0	At3g27730	822395	RCK (ROCK-N-ROLLERS)	DNA helicase required for interference-sensitive meiotic crossover events.	O.I.	C.G.	H.G.
118.4	99.9	28.3	At5g44270	834450	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
118.2	99.9	19.5	At1g01200	839493	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, nucleus, cell plate;MOFPBVA	O.I.	C.G.	H.G.
118.0	99.9	22.2	At4g08740	826443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
117.0	99.9	14.1	At5g57400	835846	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
116.4	99.9	37.0	At3g43320	823411	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
116.3	99.9	6.3	At1g64020	842705	serpin-related / serine protease inhibitor-related	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
116.1	99.9	16.6	At5g43200	834338	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
114.6	99.9	40.2	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
111.9	99.9	29.2	At4g23970	828497	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
111.1	99.9	27.1	At1g69560	843292	MYB105 (myb domain protein 105)	Encodes a putative transcription factor (MYB105).	O.I.	C.G.	H.G.
110.2	99.9	20.3	At2g25030	3768249	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
109.2	99.9	24.9	At4g36105	829767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV	O.I.	C.G.	H.G.
109.1	99.9	46.7	At2g22850	816816	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMF	O.I.	C.G.	H.G.
109.1	99.9	26.1	At1g59680	842259	EDA1 (embryo sac development arrest 1)	F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P	O.I.	C.G.	H.G.
107.4	99.9	14.9	At2g11090	815577	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
107.2	99.9	36.4	At4g17785	827500	MYB39 (myb domain protein 39)	Encodes a putative transcription factor (MYB39).	O.I.	C.G.	H.G.
106.2	99.9	17.3	At4g17700	827491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
105.7	99.9	4.5	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
105.3	99.9	20.8	At5g35890	833575	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:anchored to membrane;P	O.I.	C.G.	H.G.
105.0	99.9	18.3	At5g56800	835782	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
103.6	99.9	43.5	At3g46580	823811	MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5)	Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	O.I.	C.G.	H.G.
103.6	99.9	13.3	At2g30760	817627	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
103.4	99.9	24.1	At1g53810	3767451	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
103.1	99.9	17.3	At4g07720	3770346	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
103.1	99.9	15.5	At1g31260	840014	ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)	member of Fe(II) transporter isolog family	O.I.	C.G.	H.G.
102.3	99.9	42.9	At2g46380	819246	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;POMB	O.I.	C.G.	H.G.
102.3	99.9	13.9	At1g19390	838522	wall-associated kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
102.2	99.9	31.8	At4g11050	826706	AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3)	F:carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
102.1	99.9	42.3	At5g07040	830595	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV	O.I.	C.G.	H.G.
101.8	99.9	19.5	At5g06020	830489	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
101.7	99.9	16.6	At2g34210	817982	structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor	F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV	O.I.	C.G.	H.G.
100.9	99.9	32.0	At5g38310	833813	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MP	O.I.	C.G.	H.G.
99.5	99.9	12.4	At5g23640	832429	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
99.0	99.9	15.6	At4g23760	828476	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
98.6	99.9	26.1	At2g36980	818272	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFAB	O.I.	C.G.	H.G.
97.5	99.9	23.3	At4g01380	826657	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
97.2	99.9	17.6	At3g22040	821764	receptor-like protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
96.5	99.9	28.2	At3g29380	822598	transcription factor IIB (TFIIB) family protein	F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:response to cadmium ion;C:transcription factor complex, nucleus;OAMFPV	O.I.	C.G.	H.G.
96.3	99.9	14.6	At1g33320	840226	cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative	F:pyridoxal phosphate binding, cystathionine gamma-synthase activity, catalytic activity;P:amino acid metabolic process, methionine biosynthetic process;C:unknown;OBFMPA	O.I.	C.G.	H.G.
95.7	99.9	13.9	At3g05440	819709	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
94.9	99.9	7.2	At3g42400	823236	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
94.6	99.9	11.5	At5g40750	834075	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
93.7	99.9	29.4	At1g52950	841728	replication protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
93.7	99.9	20.5	At2g26950	817236	AtMYB104 (myb domain protein 104)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
92.3	99.9	19.6	At4g19580	827700	heat shock protein binding	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
92.2	99.9	14.5	At5g39390	833935	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
90.8	99.9	11.6	At3g26040	822201	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
90.1	99.9	12.8	At5g32600	833241	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
90.0	99.9	16.8	At2g44810	819090	DAD1 (DEFECTIVE ANTHER DEHISCENCE 1)	Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis.	O.I.	C.G.	H.G.
89.1	99.9	11.1	At3g25880	822183	auxin-resistance protein, putative	F:binding, catalytic activity;P:response to auxin stimulus, metabolic process;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
89.1	99.9	8.1	At2g10660	3767861	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
89.0	99.9	16.6	At2g47150	819328	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
87.6	99.9	7.3	At2g10465	815506	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
86.6	99.9	29.1	At1g47465	3767381	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
86.2	99.9	18.4	At1g35480	3766947	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
86.1	99.9	17.2	At5g39700	833966	MYB89 (myb domain protein 89)	Encodes a putative transcription factor (MYB89).	O.I.	C.G.	H.G.
85.8	99.9	17.5	At2g12910	3768701	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
85.3	99.9	15.3	At4g13570	826990	HTA4	Encodes HTA4, a histone H2A protein.	O.I.	C.G.	H.G.
83.8	99.9	12.0	At5g33380	833316	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
83.1	99.9	13.5	At4g03660	825666	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
82.8	99.9	10.4	At4g31260	829253	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
82.7	99.9	12.0	At5g22990	832363	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
82.1	99.9	25.1	At5g01310	830940	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus, chloroplast;PMFBOV	O.I.	C.G.	H.G.
81.8	99.9	234.1	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
81.1	99.9	22.7	At3g01900	821263	CYP94B2	member of CYP94B	O.I.	C.G.	H.G.

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GSM ID	GSM184552
Assay name	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184552 Assay name Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184552

Assay name Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root