CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184551

Assay name Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3310.2 100.0 36.3 At1g37340 3767070 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2594.4 100.0 25.8 At3g42250 823207 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2468.6 100.0 21.5 At1g56530 842106 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
2310.2 100.0 75.0 At5g38800 833871 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
2153.2 100.0 47.6 At5g28810 832997 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFA O.I. C.G. H.G.
1997.6 100.0 37.2 At3g59860 3769741 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1987.0 100.0 39.8 At1g77910 844126 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1667.5 100.0 26.3 At3g45380 823676 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1608.3 100.0 54.1 At3g60430 - - O.I. C.G. H.G.
1574.4 100.0 68.9 At5g54030 835486 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
1463.5 100.0 51.8 At5g35760 833555 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
1416.4 100.0 33.9 At2g24780 817015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1381.1 100.0 44.1 At5g40750 834075 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1353.3 100.0 102.0 At3g01080 821213 WRKY58 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
1310.5 100.0 116.0 At5g01080 831873 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
1307.9 100.0 41.1 At1g35143 840400 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1288.7 100.0 37.2 At4g13880 827022 AtRLP48 (Receptor Like Protein 48) F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
1261.0 100.0 848.3 At1g36540 3767012 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1193.5 100.0 52.3 At5g39390 833935 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
1173.7 100.0 51.2 At3g50120 824174 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1107.0 100.0 70.4 At5g51090 835182 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1102.3 100.0 83.2 At3g20950 821645 CYP705A32 member of CYP705A O.I. C.G. H.G.
1093.4 100.0 103.1 At5g11940 831067 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
1044.6 100.0 30.8 At1g41900 840803 transposable element gene pseudogene of myosin heavy chain-related O.I. C.G. H.G.
1032.4 100.0 49.7 At5g42640 834272 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PM O.I. C.G. H.G.
1017.6 100.0 30.8 At2g06890 3768157 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
986.8 100.0 60.1 At1g27610 839653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
983.2 100.0 55.3 At3g44910 823625 ATCHX12 member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
981.7 100.0 31.3 At5g14990 831351 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV O.I. C.G. H.G.
976.3 100.0 64.3 At3g45540 823695 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPF O.I. C.G. H.G.
953.6 100.0 52.7 At3g19085 821443 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
923.3 100.0 42.5 At4g21640 828251 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
920.1 100.0 53.4 At1g32040 840095 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
898.8 100.0 40.4 At1g47920 841210 syntaxin-related family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
887.7 100.0 62.0 At5g07450 830636 CYCP4 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB O.I. C.G. H.G.
884.8 100.0 34.0 At1g61940 842489 AtTLP4 (TUBBY LIKE PROTEIN 4) Member of TLP family O.I. C.G. H.G.
860.0 100.0 34.7 At2g36920 818266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
855.3 100.0 66.9 At4g17860 827509 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
842.9 100.0 33.3 At1g13540 837914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
835.4 100.0 49.4 At2g46770 819290 EMB2301 (EMBRYO DEFECTIVE 2301) NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop. O.I. C.G. H.G.
828.3 100.0 48.6 At3g43420 823422 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
814.0 100.0 14.6 At1g43060 3767287 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
812.0 100.0 78.9 At5g28940 833020 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
810.1 100.0 53.3 At2g17920 816302 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
809.7 100.0 35.3 At5g23640 832429 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
807.8 100.0 30.4 At2g13720 815856 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPV O.I. C.G. H.G.
804.5 100.0 11.7 At4g03990 825711 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
800.5 100.0 53.0 At3g14820 820711 carboxylesterase/ hydrolase, acting on ester bonds / lipase F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
798.5 100.0 57.2 At3g53790 824546 TRFL4 (TRF-LIKE 4) Arabidopsis thaliana telomere-binding protein, putative (At3g53790) O.I. C.G. H.G.
797.3 100.0 45.8 At3g31390 3769189 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
797.0 100.0 18.8 At2g04330 814972 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
787.6 100.0 57.2 At3g04900 819650 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMFBOV O.I. C.G. H.G.
785.3 100.0 34.7 At4g03680 825668 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
781.6 100.0 61.8 At5g05150 830397 AtATG18e F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA O.I. C.G. H.G.
780.5 100.0 39.3 At1g09400 837462 12-oxophytodienoate reductase, putative F:unknown;P:unknown;C:mitochondrion;BOFPAM O.I. C.G. H.G.
769.0 100.0 58.7 At5g36960 833666 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
762.7 100.0 58.6 At2g23160 816848 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
748.1 100.0 65.5 At4g11490 826754 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
735.6 100.0 38.2 At3g31330 822883 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
732.1 100.0 37.4 At5g64490 836570 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
728.1 100.0 45.1 At2g03560 814885 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PB O.I. C.G. H.G.
727.4 100.0 53.6 At3g06280 819802 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
721.9 100.0 65.0 At1g14520 838014 MIOX1 (MYO-INISITOL OXYGENASE) Encodes MIOX1. Belongs to myo-inositol oxygenase gene family. O.I. C.G. H.G.
721.8 100.0 58.2 At2g39320 818517 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
719.0 100.0 35.7 At2g03630 814892 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
710.4 100.0 32.8 At2g35580 818123 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF O.I. C.G. H.G.
707.3 100.0 23.8 At3g63230 825498 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
706.8 100.0 26.8 At1g53970 841835 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
704.8 100.0 60.4 At3g48830 824044 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein F:polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity;P:RNA processing;C:endomembrane system;BOMFPVA O.I. C.G. H.G.
701.2 100.0 31.3 At3g43970 823514 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
699.0 100.0 47.4 At5g44900 834520 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, N-terminal protein myristoylation, defense response, innate immune response;C:intrinsic to membrane;PO O.I. C.G. H.G.
695.1 100.0 28.7 At2g15360 816028 galactoside 2-alpha-L-fucosyltransferase F:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;P O.I. C.G. H.G.
694.2 100.0 22.3 At4g36370 829789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
688.8 100.0 22.3 At5g51320 835206 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
681.8 100.0 50.5 At2g25030 3768249 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
681.2 100.0 39.0 At3g42460 823249 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
678.2 100.0 47.3 At4g10490 826641 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
672.7 100.0 37.8 At3g57840 824953 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
667.7 100.0 16.0 At1g79100 844251 arginine/serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
663.3 100.0 69.0 At3g59460 825115 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
644.2 100.0 50.0 At1g05330 837032 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
643.8 100.0 44.9 At5g42110 834216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
641.1 100.0 40.5 At4g08640 826429 ATP binding / protein binding F:protein binding, ATP binding;P:cellular protein metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
638.9 100.0 31.8 At1g75360 843872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB O.I. C.G. H.G.
638.2 100.0 31.4 At5g30520 833141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
635.0 100.0 38.7 At3g30220 822722 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
634.5 100.0 11.1 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
621.6 100.0 10.9 At1g32670 840161 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
618.9 100.0 78.5 At1g28135 839707 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
617.6 100.0 44.7 At4g26540 828760 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
616.8 100.0 51.9 At5g52870 835364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
612.8 100.0 63.1 At3g46810 823834 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
611.5 100.0 38.2 At3g09750 820133 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
604.0 100.0 18.9 At2g23920 816924 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
601.5 100.0 33.0 At3g21620 821716 early-responsive to dehydration protein-related / ERD protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMO O.I. C.G. H.G.
601.0 100.0 34.3 At5g37610 833739 voltage-gated anion channel F:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane, endomembrane system;PMF O.I. C.G. H.G.
600.1 100.0 39.8 At1g60790 842373 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
598.3 100.0 45.5 At5g39700 833966 MYB89 (myb domain protein 89) Encodes a putative transcription factor (MYB89). O.I. C.G. H.G.
597.8 100.0 49.3 At2g03180 814847 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
596.6 100.0 72.0 At5g28010 832871 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
3310.2	100.0	36.3	At1g37340	3767070	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2594.4	100.0	25.8	At3g42250	823207	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2468.6	100.0	21.5	At1g56530	842106	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
2310.2	100.0	75.0	At5g38800	833871	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
2153.2	100.0	47.6	At5g28810	832997	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFA	O.I.	C.G.	H.G.
1997.6	100.0	37.2	At3g59860	3769741	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1987.0	100.0	39.8	At1g77910	844126	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1667.5	100.0	26.3	At3g45380	823676	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1608.3	100.0	54.1	At3g60430		-	-	O.I.	C.G.	H.G.
1574.4	100.0	68.9	At5g54030	835486	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
1463.5	100.0	51.8	At5g35760	833555	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
1416.4	100.0	33.9	At2g24780	817015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1381.1	100.0	44.1	At5g40750	834075	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1353.3	100.0	102.0	At3g01080	821213	WRKY58	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
1310.5	100.0	116.0	At5g01080	831873	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
1307.9	100.0	41.1	At1g35143	840400	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1288.7	100.0	37.2	At4g13880	827022	AtRLP48 (Receptor Like Protein 48)	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
1261.0	100.0	848.3	At1g36540	3767012	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1193.5	100.0	52.3	At5g39390	833935	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
1173.7	100.0	51.2	At3g50120	824174	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1107.0	100.0	70.4	At5g51090	835182	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1102.3	100.0	83.2	At3g20950	821645	CYP705A32	member of CYP705A	O.I.	C.G.	H.G.
1093.4	100.0	103.1	At5g11940	831067	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
1044.6	100.0	30.8	At1g41900	840803	transposable element gene	pseudogene of myosin heavy chain-related	O.I.	C.G.	H.G.
1032.4	100.0	49.7	At5g42640	834272	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PM	O.I.	C.G.	H.G.
1017.6	100.0	30.8	At2g06890	3768157	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
986.8	100.0	60.1	At1g27610	839653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
983.2	100.0	55.3	At3g44910	823625	ATCHX12	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
981.7	100.0	31.3	At5g14990	831351	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV	O.I.	C.G.	H.G.
976.3	100.0	64.3	At3g45540	823695	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPF	O.I.	C.G.	H.G.
953.6	100.0	52.7	At3g19085	821443	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
923.3	100.0	42.5	At4g21640	828251	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
920.1	100.0	53.4	At1g32040	840095	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
898.8	100.0	40.4	At1g47920	841210	syntaxin-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
887.7	100.0	62.0	At5g07450	830636	CYCP4	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB	O.I.	C.G.	H.G.
884.8	100.0	34.0	At1g61940	842489	AtTLP4 (TUBBY LIKE PROTEIN 4)	Member of TLP family	O.I.	C.G.	H.G.
860.0	100.0	34.7	At2g36920	818266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
855.3	100.0	66.9	At4g17860	827509	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
842.9	100.0	33.3	At1g13540	837914	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
835.4	100.0	49.4	At2g46770	819290	EMB2301 (EMBRYO DEFECTIVE 2301)	NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop.	O.I.	C.G.	H.G.
828.3	100.0	48.6	At3g43420	823422	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
814.0	100.0	14.6	At1g43060	3767287	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
812.0	100.0	78.9	At5g28940	833020	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
810.1	100.0	53.3	At2g17920	816302	nucleic acid binding / zinc ion binding	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
809.7	100.0	35.3	At5g23640	832429	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
807.8	100.0	30.4	At2g13720	815856	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPV	O.I.	C.G.	H.G.
804.5	100.0	11.7	At4g03990	825711	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
800.5	100.0	53.0	At3g14820	820711	carboxylesterase/ hydrolase, acting on ester bonds / lipase	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
798.5	100.0	57.2	At3g53790	824546	TRFL4 (TRF-LIKE 4)	Arabidopsis thaliana telomere-binding protein, putative (At3g53790)	O.I.	C.G.	H.G.
797.3	100.0	45.8	At3g31390	3769189	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
797.0	100.0	18.8	At2g04330	814972	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
787.6	100.0	57.2	At3g04900	819650	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMFBOV	O.I.	C.G.	H.G.
785.3	100.0	34.7	At4g03680	825668	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
781.6	100.0	61.8	At5g05150	830397	AtATG18e	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA	O.I.	C.G.	H.G.
780.5	100.0	39.3	At1g09400	837462	12-oxophytodienoate reductase, putative	F:unknown;P:unknown;C:mitochondrion;BOFPAM	O.I.	C.G.	H.G.
769.0	100.0	58.7	At5g36960	833666	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
762.7	100.0	58.6	At2g23160	816848	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
748.1	100.0	65.5	At4g11490	826754	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
735.6	100.0	38.2	At3g31330	822883	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
732.1	100.0	37.4	At5g64490	836570	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
728.1	100.0	45.1	At2g03560	814885	ubiquitin-protein ligase	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
727.4	100.0	53.6	At3g06280	819802	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
721.9	100.0	65.0	At1g14520	838014	MIOX1 (MYO-INISITOL OXYGENASE)	Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.	O.I.	C.G.	H.G.
721.8	100.0	58.2	At2g39320	818517	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
719.0	100.0	35.7	At2g03630	814892	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
710.4	100.0	32.8	At2g35580	818123	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF	O.I.	C.G.	H.G.
707.3	100.0	23.8	At3g63230	825498	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
706.8	100.0	26.8	At1g53970	841835	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
704.8	100.0	60.4	At3g48830	824044	polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein	F:polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity;P:RNA processing;C:endomembrane system;BOMFPVA	O.I.	C.G.	H.G.
701.2	100.0	31.3	At3g43970	823514	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
699.0	100.0	47.4	At5g44900	834520	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, N-terminal protein myristoylation, defense response, innate immune response;C:intrinsic to membrane;PO	O.I.	C.G.	H.G.
695.1	100.0	28.7	At2g15360	816028	galactoside 2-alpha-L-fucosyltransferase	F:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;P	O.I.	C.G.	H.G.
694.2	100.0	22.3	At4g36370	829789	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
688.8	100.0	22.3	At5g51320	835206	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
681.8	100.0	50.5	At2g25030	3768249	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
681.2	100.0	39.0	At3g42460	823249	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
678.2	100.0	47.3	At4g10490	826641	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
672.7	100.0	37.8	At3g57840	824953	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
667.7	100.0	16.0	At1g79100	844251	arginine/serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
663.3	100.0	69.0	At3g59460	825115	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
644.2	100.0	50.0	At1g05330	837032	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
643.8	100.0	44.9	At5g42110	834216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
641.1	100.0	40.5	At4g08640	826429	ATP binding / protein binding	F:protein binding, ATP binding;P:cellular protein metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
638.9	100.0	31.8	At1g75360	843872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB	O.I.	C.G.	H.G.
638.2	100.0	31.4	At5g30520	833141	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
635.0	100.0	38.7	At3g30220	822722	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
634.5	100.0	11.1	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
621.6	100.0	10.9	At1g32670	840161	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
618.9	100.0	78.5	At1g28135	839707	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
617.6	100.0	44.7	At4g26540	828760	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
616.8	100.0	51.9	At5g52870	835364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
612.8	100.0	63.1	At3g46810	823834	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
611.5	100.0	38.2	At3g09750	820133	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
604.0	100.0	18.9	At2g23920	816924	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
601.5	100.0	33.0	At3g21620	821716	early-responsive to dehydration protein-related / ERD protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMO	O.I.	C.G.	H.G.
601.0	100.0	34.3	At5g37610	833739	voltage-gated anion channel	F:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane, endomembrane system;PMF	O.I.	C.G.	H.G.
600.1	100.0	39.8	At1g60790	842373	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
598.3	100.0	45.5	At5g39700	833966	MYB89 (myb domain protein 89)	Encodes a putative transcription factor (MYB89).	O.I.	C.G.	H.G.
597.8	100.0	49.3	At2g03180	814847	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
596.6	100.0	72.0	At5g28010	832871	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM184551
Assay name	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184551 Assay name Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184551

Assay name Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root