CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184538

Assay name Whole roots 2hr KCl control treated then frozen, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
457.6 100.0 95.9 At2g30660 817616 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
298.7 100.0 187.5 At4g19750 827719 glycosyl hydrolase family 18 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA O.I. C.G. H.G.
280.7 100.0 334.1 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
211.5 100.0 93.5 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins O.I. C.G. H.G.
187.6 100.0 135.7 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
145.8 99.9 34.9 At2g02580 814788 CYP71B9 member of CYP71B O.I. C.G. H.G.
142.6 99.9 78.2 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
134.0 99.9 121.9 At5g22555 832318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
109.4 99.9 485.7 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
106.7 99.9 61.9 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
101.3 99.9 123.9 At4g37430 829897 CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2) Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily. O.I. C.G. H.G.
91.0 99.9 185.0 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
75.3 99.9 85.8 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
59.4 99.8 359.7 At1g44800 841044 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BOPAM O.I. C.G. H.G.
58.8 99.8 168.5 At3g23190 821897 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
57.3 99.8 105.1 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family O.I. C.G. H.G.
56.5 99.8 435.3 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
55.2 99.8 130.6 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
53.6 99.8 19.9 At2g01430 814671 ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOV O.I. C.G. H.G.
51.5 99.8 131.7 At2g19590 816478 ACO1 (ACC OXIDASE 1) encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase O.I. C.G. H.G.
51.5 99.8 121.8 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF O.I. C.G. H.G.
50.3 99.8 30.6 At2g26820 817223 ATPP2-A3 (Phloem protein 2-A3) F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVA O.I. C.G. H.G.
49.0 99.8 80.2 At5g45440 834580 disease resistance protein-related F:ATP binding;P:apoptosis;C:cellular_component unknown;PFB O.I. C.G. H.G.
48.5 99.8 326.5 At3g14940 820723 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. O.I. C.G. H.G.
47.9 99.8 179.1 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
47.4 99.8 147.8 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
47.0 99.8 89.4 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
46.8 99.8 313.2 At3g03270 821303 universal stress protein (USP) family protein / early nodulin ENOD18 family protein F:unknown;P:response to stress;C:plasma membrane, membrane;PFMBO O.I. C.G. H.G.
45.2 99.8 68.3 At4g31730 829301 GDU1 (GLUTAMINE DUMPER 1) Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion O.I. C.G. H.G.
44.9 99.8 36.1 At4g32950 829432 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
44.5 99.8 28.5 At3g61400 825312 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein O.I. C.G. H.G.
43.0 99.8 76.3 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. O.I. C.G. H.G.
42.6 99.8 54.0 At1g52140 841644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.0 99.8 57.1 At1g78050 844140 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
41.2 99.8 830.0 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
40.5 99.8 183.7 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
38.2 99.8 94.0 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
37.8 99.8 135.3 At2g46690 819281 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
37.5 99.7 33.7 At1g44050 841006 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
36.8 99.7 259.6 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.5 99.7 152.5 At4g05390 825887 ATRFNR1 (ROOT FNR 1) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
35.1 99.7 79.0 At3g18560 821387 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
34.0 99.7 37.6 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.5 99.7 21.9 At3g47980 823953 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP O.I. C.G. H.G.
33.4 99.7 98.2 At5g56080 835707 NAS2 (NICOTIANAMINE SYNTHASE 2) Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc. O.I. C.G. H.G.
33.4 99.7 91.9 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB O.I. C.G. H.G.
33.4 99.7 81.7 At1g72360 843568 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
32.6 99.7 353.3 At5g13420 831183 transaldolase, putative F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF O.I. C.G. H.G.
32.6 99.7 15.5 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
32.5 99.7 483.1 At1g11580 837701 PMEPCRA (METHYLESTERASE PCR A) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMO O.I. C.G. H.G.
32.4 99.7 97.7 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
32.0 99.7 41.3 At3g04530 819609 PPCK2 Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light. O.I. C.G. H.G.
31.7 99.7 12.1 At1g78360 844172 ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
31.3 99.7 27.9 At3g11370 820309 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
31.1 99.7 45.6 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.7 99.7 176.5 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.
28.7 99.7 34.1 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
28.3 99.7 45.3 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
28.2 99.7 25.7 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
27.8 99.7 19.4 At3g49760 824138 AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
27.2 99.7 21.9 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
27.1 99.7 343.8 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
27.1 99.7 131.7 At2g19970 816516 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO O.I. C.G. H.G.
26.9 99.7 35.0 At5g15830 831440 AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
26.8 99.7 16.5 At2g47560 819369 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
26.5 99.7 78.9 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
25.8 99.7 189.3 At3g02910 821189 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA O.I. C.G. H.G.
25.7 99.7 252.3 At4g30140 829137 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
25.6 99.7 160.9 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P O.I. C.G. H.G.
25.5 99.7 343.8 At1g12110 837763 NRT1.1 Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium. O.I. C.G. H.G.
25.5 99.7 154.0 At3g49940 824156 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.5 99.7 54.0 At4g08780 826448 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM O.I. C.G. H.G.
25.3 99.6 62.4 At5g14760 831328 AO (L-ASPARTATE OXIDASE) At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2 O.I. C.G. H.G.
25.3 99.6 55.5 At3g50350 824197 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
25.0 99.6 377.0 At2g15620 816055 NIR1 (NITRITE REDUCTASE 1) involved in the second step of nitrate assimilation O.I. C.G. H.G.
24.8 99.6 153.6 At3g11340 820307 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
24.8 99.6 16.9 At5g05900 830475 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
23.9 99.6 44.4 At5g05790 830464 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
23.4 99.6 39.1 At4g35150 829667 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO O.I. C.G. H.G.
22.7 99.6 43.7 At3g20590 821606 non-race specific disease resistance protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.2 99.6 15.3 At2g02250 814756 AtPP2-B2 (Phloem protein 2-B2) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
22.1 99.6 27.7 At4g14390 827084 ankyrin repeat family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
21.4 99.6 72.1 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.4 99.6 60.4 At5g45480 834584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
21.2 99.6 242.1 At5g50200 835085 WR3 (WOUND-RESPONSIVE 3) Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction. O.I. C.G. H.G.
21.0 99.6 70.7 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
20.6 99.6 22.6 At5g45460 834582 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.3 99.6 282.5 At2g26400 817180 ATARD3 (ACIREDUCTONE DIOXYGENASE 3) Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family. O.I. C.G. H.G.
20.1 99.6 128.6 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
20.0 99.6 146.9 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). O.I. C.G. H.G.
20.0 99.6 9.3 At1g07550 837269 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
19.4 99.6 9.7 At3g12220 820402 scpl16 (serine carboxypeptidase-like 16) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
19.3 99.6 370.8 At2g27510 817297 ATFD3 (ferredoxin 3) F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV O.I. C.G. H.G.
19.3 99.6 39.3 At5g04080 830287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
19.1 99.6 70.9 At5g38930 833885 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO O.I. C.G. H.G.
19.1 99.6 61.6 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. O.I. C.G. H.G.
19.1 99.6 16.4 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
19.0 99.5 31.8 At5g14000 831248 anac084 (Arabidopsis NAC domain containing protein 84) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
18.7 99.5 13.8 At4g25760 828681 AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.5 99.5 25.0 At4g24670 828569 TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2) Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
457.6	100.0	95.9	At2g30660	817616	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	F:catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
298.7	100.0	187.5	At4g19750	827719	glycosyl hydrolase family 18 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPA	O.I.	C.G.	H.G.
280.7	100.0	334.1	At2g30670	817617	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
211.5	100.0	93.5	At3g27070	822325	TOM20-1 (translocase outer membrane 20-1)	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	O.I.	C.G.	H.G.
187.6	100.0	135.7	At5g41280	834129	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
145.8	99.9	34.9	At2g02580	814788	CYP71B9	member of CYP71B	O.I.	C.G.	H.G.
142.6	99.9	78.2	At5g52710	835348	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
134.0	99.9	121.9	At5g22555	832318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
109.4	99.9	485.7	At1g30510	839930	ATRFNR2 (ROOT FNR 2)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
106.7	99.9	61.9	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
101.3	99.9	123.9	At4g37430	829897	CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)	Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.	O.I.	C.G.	H.G.
91.0	99.9	185.0	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
75.3	99.9	85.8	At3g12230	820403	scpl14 (serine carboxypeptidase-like 14)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
59.4	99.8	359.7	At1g44800	841044	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
58.8	99.8	168.5	At3g23190	821897	lesion inducing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
57.3	99.8	105.1	At3g27170	822336	CLC-B (CHLORIDE CHANNEL B)	member of Anion channel protein family	O.I.	C.G.	H.G.
56.5	99.8	435.3	At1g49860	841409	ATGSTF14	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
55.2	99.8	130.6	At1g24280	839044	G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
53.6	99.8	19.9	At2g01430	814671	ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOV	O.I.	C.G.	H.G.
51.5	99.8	131.7	At2g19590	816478	ACO1 (ACC OXIDASE 1)	encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase	O.I.	C.G.	H.G.
51.5	99.8	121.8	At1g29020	839776	calcium-binding EF hand family protein	F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF	O.I.	C.G.	H.G.
50.3	99.8	30.6	At2g26820	817223	ATPP2-A3 (Phloem protein 2-A3)	F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
49.0	99.8	80.2	At5g45440	834580	disease resistance protein-related	F:ATP binding;P:apoptosis;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
48.5	99.8	326.5	At3g14940	820723	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.	O.I.	C.G.	H.G.
47.9	99.8	179.1	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.4	99.8	147.8	At3g28510	822481	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
47.0	99.8	89.4	At4g18340	827561	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
46.8	99.8	313.2	At3g03270	821303	universal stress protein (USP) family protein / early nodulin ENOD18 family protein	F:unknown;P:response to stress;C:plasma membrane, membrane;PFMBO	O.I.	C.G.	H.G.
45.2	99.8	68.3	At4g31730	829301	GDU1 (GLUTAMINE DUMPER 1)	Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion	O.I.	C.G.	H.G.
44.9	99.8	36.1	At4g32950	829432	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
44.5	99.8	28.5	At3g61400	825312	2-oxoglutarate-dependent dioxygenase, putative	1-aminocyclopropane-1-carboxylate oxidase-like protein	O.I.	C.G.	H.G.
43.0	99.8	76.3	At1g55120	841955	ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)	Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
42.6	99.8	54.0	At1g52140	841644	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.0	99.8	57.1	At1g78050	844140	PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)	F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
41.2	99.8	830.0	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
40.5	99.8	183.7	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
38.2	99.8	94.0	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
37.8	99.8	135.3	At2g46690	819281	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
37.5	99.7	33.7	At1g44050	841006	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
36.8	99.7	259.6	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.5	99.7	152.5	At4g05390	825887	ATRFNR1 (ROOT FNR 1)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
35.1	99.7	79.0	At3g18560	821387	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
34.0	99.7	37.6	At5g19970	832119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.5	99.7	21.9	At3g47980	823953	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP	O.I.	C.G.	H.G.
33.4	99.7	98.2	At5g56080	835707	NAS2 (NICOTIANAMINE SYNTHASE 2)	Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.	O.I.	C.G.	H.G.
33.4	99.7	91.9	At3g03670	821193	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB	O.I.	C.G.	H.G.
33.4	99.7	81.7	At1g72360	843568	ethylene-responsive element-binding protein, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
32.6	99.7	353.3	At5g13420	831183	transaldolase, putative	F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF	O.I.	C.G.	H.G.
32.6	99.7	15.5	At1g31060	839992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
32.5	99.7	483.1	At1g11580	837701	PMEPCRA (METHYLESTERASE PCR A)	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
32.4	99.7	97.7	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.0	99.7	41.3	At3g04530	819609	PPCK2	Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light.	O.I.	C.G.	H.G.
31.7	99.7	12.1	At1g78360	844172	ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
31.3	99.7	27.9	At3g11370	820309	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
31.1	99.7	45.6	At5g10210	830885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.7	99.7	176.5	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.
28.7	99.7	34.1	At5g22890	832353	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
28.3	99.7	45.3	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
28.2	99.7	25.7	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
27.8	99.7	19.4	At3g49760	824138	AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
27.2	99.7	21.9	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
27.1	99.7	343.8	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
27.1	99.7	131.7	At2g19970	816516	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO	O.I.	C.G.	H.G.
26.9	99.7	35.0	At5g15830	831440	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
26.8	99.7	16.5	At2g47560	819369	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
26.5	99.7	78.9	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
25.8	99.7	189.3	At3g02910	821189	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA	O.I.	C.G.	H.G.
25.7	99.7	252.3	At4g30140	829137	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
25.6	99.7	160.9	At4g10270	826619	wound-responsive family protein	F:molecular_function unknown;P:response to wounding;C:unknown;P	O.I.	C.G.	H.G.
25.5	99.7	343.8	At1g12110	837763	NRT1.1	Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium.	O.I.	C.G.	H.G.
25.5	99.7	154.0	At3g49940	824156	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.5	99.7	54.0	At4g08780	826448	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM	O.I.	C.G.	H.G.
25.3	99.6	62.4	At5g14760	831328	AO (L-ASPARTATE OXIDASE)	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	O.I.	C.G.	H.G.
25.3	99.6	55.5	At3g50350	824197	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
25.0	99.6	377.0	At2g15620	816055	NIR1 (NITRITE REDUCTASE 1)	involved in the second step of nitrate assimilation	O.I.	C.G.	H.G.
24.8	99.6	153.6	At3g11340	820307	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
24.8	99.6	16.9	At5g05900	830475	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
23.9	99.6	44.4	At5g05790	830464	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
23.4	99.6	39.1	At4g35150	829667	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO	O.I.	C.G.	H.G.
22.7	99.6	43.7	At3g20590	821606	non-race specific disease resistance protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.2	99.6	15.3	At2g02250	814756	AtPP2-B2 (Phloem protein 2-B2)	F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.1	99.6	27.7	At4g14390	827084	ankyrin repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
21.4	99.6	72.1	At1g49310	841354	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.4	99.6	60.4	At5g45480	834584	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
21.2	99.6	242.1	At5g50200	835085	WR3 (WOUND-RESPONSIVE 3)	Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.	O.I.	C.G.	H.G.
21.0	99.6	70.7	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
20.6	99.6	22.6	At5g45460	834582	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.3	99.6	282.5	At2g26400	817180	ATARD3 (ACIREDUCTONE DIOXYGENASE 3)	Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family.	O.I.	C.G.	H.G.
20.1	99.6	128.6	At5g10580	830923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
20.0	99.6	146.9	At3g43190	823393	SUS4	Encodes a protein with sucrose synthase activity (SUS4).	O.I.	C.G.	H.G.
20.0	99.6	9.3	At1g07550	837269	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
19.4	99.6	9.7	At3g12220	820402	scpl16 (serine carboxypeptidase-like 16)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
19.3	99.6	370.8	At2g27510	817297	ATFD3 (ferredoxin 3)	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV	O.I.	C.G.	H.G.
19.3	99.6	39.3	At5g04080	830287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
19.1	99.6	70.9	At5g38930	833885	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFO	O.I.	C.G.	H.G.
19.1	99.6	61.6	At5g11920	831065	AtcwINV6 (6-&1-fructan exohydrolase)	Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
19.1	99.6	16.4	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
19.0	99.5	31.8	At5g14000	831248	anac084 (Arabidopsis NAC domain containing protein 84)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.7	99.5	13.8	At4g25760	828681	AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.5	99.5	25.0	At4g24670	828569	TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2)	Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.	O.I.	C.G.	H.G.

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GSM ID	GSM184538
Assay name	Whole roots 2hr KCl control treated then frozen, biological rep2
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184538 Assay name Whole roots 2hr KCl control treated then frozen, biological rep2 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184538

Assay name Whole roots 2hr KCl control treated then frozen, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root