CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184537

Assay name Whole roots 2hr KCl control treated then frozen, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3001.8 100.0 63.7 At3g29800 822695 AAA-type ATPase family F:ATPase activity, ATP binding;P:biological_process unknown;C:endomembrane system;PFMOBAV O.I. C.G. H.G.
1388.0 100.0 42.9 At5g50470 835115 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
1339.7 100.0 11.7 At4g03810 3770158 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1298.8 100.0 65.3 At5g36280 833626 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1166.2 100.0 76.3 At5g66260 836758 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
1163.7 100.0 63.5 At4g27930 828906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1115.6 100.0 70.4 At4g05270 825875 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POMF O.I. C.G. H.G.
1107.3 100.0 74.0 At4g03490 827426 protein binding F:protein binding;P:unknown;C:unknown;MOFPBVA O.I. C.G. H.G.
1038.0 100.0 48.4 At3g51200 824283 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
1019.0 100.0 78.6 At4g09300 826513 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
1016.0 100.0 20.1 At1g37340 3767070 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
999.3 100.0 112.1 At1g33220 840216 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
988.9 100.0 28.0 At5g35280 833482 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
970.4 100.0 78.5 At1g48220 841242 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
912.7 100.0 77.6 At1g69560 843292 MYB105 (myb domain protein 105) Encodes a putative transcription factor (MYB105). O.I. C.G. H.G.
904.5 100.0 105.6 At4g17785 827500 MYB39 (myb domain protein 39) Encodes a putative transcription factor (MYB39). O.I. C.G. H.G.
893.7 100.0 40.0 At5g34450 833359 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
875.9 100.0 48.4 At2g36210 818193 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
860.4 100.0 34.6 At3g42480 823256 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
840.8 100.0 54.2 At3g22690 821840 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:regulation of chlorophyll biosynthetic process, photosystem II assembly, photosystem I assembly, thylakoid membrane organization, RNA modification;C:chloroplast;POMFBA O.I. C.G. H.G.
834.5 100.0 35.7 At4g32220 3770572 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
826.1 100.0 41.0 At1g23680 838978 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
816.0 100.0 50.3 At3g18700 821401 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
812.6 100.0 68.4 At2g10340 815493 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
801.7 100.0 45.2 At4g02740 828188 - F:unknown;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
799.0 100.0 36.1 At2g21000 3767874 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
795.0 100.0 32.8 At5g32610 833243 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
773.6 100.0 57.3 At5g56620 835763 anac099 (Arabidopsis NAC domain containing protein 99) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PM O.I. C.G. H.G.
771.4 100.0 55.2 At2g16160 816113 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
755.1 100.0 24.6 At3g63230 825498 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
748.8 100.0 22.8 At3g59860 3769741 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
745.9 100.0 61.3 At5g59660 836087 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
745.5 100.0 72.0 At3g30843 822865 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
740.7 100.0 57.1 At4g11700 826775 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
739.8 100.0 59.8 At1g51880 841615 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
737.1 100.0 65.4 At1g73690 843704 CDKD1 cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation. O.I. C.G. H.G.
729.1 100.0 113.4 At3g06020 819773 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA O.I. C.G. H.G.
726.0 100.0 28.5 At3g47230 823876 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
715.3 100.0 42.4 At4g12350 826844 MYB42 (myb domain protein 42) Encodes a putative transcription factor (MYB42). O.I. C.G. H.G.
711.1 100.0 14.8 At2g10840 3768125 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
710.8 100.0 25.5 At2g18320 816347 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
705.8 100.0 45.3 At1g24060 839018 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
704.6 100.0 22.2 At1g39350 840697 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
702.6 100.0 40.8 At3g46910 823844 ubiquitin protein ligase binding F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MPFO O.I. C.G. H.G.
699.8 100.0 66.7 At1g16910 838262 LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
699.3 100.0 27.2 At3g05540 819719 - F:unknown;P:biological_process unknown;C:cytoplasm;MFPO O.I. C.G. H.G.
694.4 100.0 72.5 At5g52260 835302 AtMYB19 (myb domain protein 19) Member of the R2R3 factor gene family. O.I. C.G. H.G.
690.1 100.0 46.5 At5g01070 831898 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO O.I. C.G. H.G.
685.6 100.0 49.4 At2g12910 3768701 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
685.1 100.0 42.6 At3g32190 822986 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV O.I. C.G. H.G.
673.4 100.0 45.7 At4g17200 827431 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
667.2 100.0 15.3 At2g12230 3768490 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
665.0 100.0 39.0 At4g18860 827620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
661.1 100.0 84.6 At4g04700 825805 CPK27 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
654.7 100.0 32.9 At3g53910 824558 malate dehydrogenase-related F:L-malate dehydrogenase activity, catalytic activity;P:malate metabolic process, carbohydrate metabolic process;C:endomembrane system;PMBOF O.I. C.G. H.G.
652.4 100.0 25.2 At3g45820 823725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
647.8 100.0 53.1 At1g53020 841735 UBC26 (UBIQUITIN-CONJUGATING ENZYME 26) F:ubiquitin-protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:unknown;MFPOV O.I. C.G. H.G.
647.5 100.0 32.1 At5g28240 832902 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
646.5 100.0 53.7 At3g59190 825088 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
643.0 100.0 48.0 At2g14595 3768400 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
637.8 100.0 49.6 At5g48530 834909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
636.2 100.0 70.5 At3g05980 819769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
636.2 100.0 33.8 At5g07160 830607 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMO O.I. C.G. H.G.
635.8 100.0 79.6 At2g27650 817311 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POMF O.I. C.G. H.G.
622.5 100.0 52.4 At4g22680 828364 MYB85 (myb domain protein 85) Encodes a putative transcription factor (MYB85). O.I. C.G. H.G.
619.7 100.0 46.6 At5g32630 3771080 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
618.7 100.0 35.8 At2g11090 815577 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
614.6 100.0 51.1 At5g67570 836893 DG1 (DELAYED GREENING 1) Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression. O.I. C.G. H.G.
612.7 100.0 79.7 At5g66300 836762 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. O.I. C.G. H.G.
607.1 100.0 34.4 At2g13630 815848 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
605.7 100.0 105.4 At3g12940 820479 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
600.5 100.0 137.8 At4g18670 827601 protein binding / structural constituent of cell wall F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVA O.I. C.G. H.G.
599.9 100.0 36.3 At4g03660 825666 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
596.0 100.0 71.3 At5g20560 832178 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
591.7 100.0 52.7 At4g08800 826451 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MOPBFVA O.I. C.G. H.G.
590.9 100.0 108.7 At4g29650 829086 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO O.I. C.G. H.G.
589.6 100.0 34.7 At5g02730 831820 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
583.5 100.0 88.2 At2g41510 818749 CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1) It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
582.6 100.0 27.7 At1g66490 842967 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
582.3 100.0 36.3 At1g24851 839087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
579.9 100.0 60.1 At1g59680 842259 EDA1 (embryo sac development arrest 1) F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P O.I. C.G. H.G.
578.2 100.0 26.2 At2g15360 816028 galactoside 2-alpha-L-fucosyltransferase F:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;P O.I. C.G. H.G.
578.1 100.0 24.0 At5g35470 833510 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
574.7 100.0 23.4 At2g12920 3768702 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
574.6 100.0 45.5 At1g24420 839058 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
569.7 100.0 46.1 At2g25030 3768249 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
569.4 100.0 45.1 At3g57370 824904 transcription factor IIB (TFIIB) family protein F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;AOMFPV O.I. C.G. H.G.
569.1 100.0 18.1 At3g30190 822712 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
563.3 100.0 18.5 At2g10465 815506 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
560.8 100.0 47.0 At2g20070 816526 - F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
557.3 100.0 42.9 At5g38440 833832 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
553.4 100.0 32.9 At5g37610 833739 voltage-gated anion channel F:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane, endomembrane system;PMF O.I. C.G. H.G.
553.2 100.0 37.1 At1g37140 840631 MCT1 (mei2 C-Terminal RRM only like 1) a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only. O.I. C.G. H.G.
552.7 100.0 112.2 At5g53740 835455 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
552.1 100.0 76.1 At5g04400 830319 anac077 (Arabidopsis NAC domain containing protein 77) F:DNA binding;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POBM O.I. C.G. H.G.
551.9 100.0 44.5 At5g20310 832153 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
549.0 100.0 54.4 At4g10220 826613 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
540.3 100.0 40.8 At2g47150 819328 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
539.4 100.0 25.8 At5g45240 834560 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
535.5 100.0 62.6 At5g55780 835672 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMFO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
3001.8	100.0	63.7	At3g29800	822695	AAA-type ATPase family	F:ATPase activity, ATP binding;P:biological_process unknown;C:endomembrane system;PFMOBAV	O.I.	C.G.	H.G.
1388.0	100.0	42.9	At5g50470	835115	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
1339.7	100.0	11.7	At4g03810	3770158	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1298.8	100.0	65.3	At5g36280	833626	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1166.2	100.0	76.3	At5g66260	836758	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
1163.7	100.0	63.5	At4g27930	828906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1115.6	100.0	70.4	At4g05270	825875	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
1107.3	100.0	74.0	At4g03490	827426	protein binding	F:protein binding;P:unknown;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
1038.0	100.0	48.4	At3g51200	824283	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
1019.0	100.0	78.6	At4g09300	826513	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
1016.0	100.0	20.1	At1g37340	3767070	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
999.3	100.0	112.1	At1g33220	840216	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
988.9	100.0	28.0	At5g35280	833482	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
970.4	100.0	78.5	At1g48220	841242	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
912.7	100.0	77.6	At1g69560	843292	MYB105 (myb domain protein 105)	Encodes a putative transcription factor (MYB105).	O.I.	C.G.	H.G.
904.5	100.0	105.6	At4g17785	827500	MYB39 (myb domain protein 39)	Encodes a putative transcription factor (MYB39).	O.I.	C.G.	H.G.
893.7	100.0	40.0	At5g34450	833359	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
875.9	100.0	48.4	At2g36210	818193	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
860.4	100.0	34.6	At3g42480	823256	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
840.8	100.0	54.2	At3g22690	821840	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:regulation of chlorophyll biosynthetic process, photosystem II assembly, photosystem I assembly, thylakoid membrane organization, RNA modification;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
834.5	100.0	35.7	At4g32220	3770572	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
826.1	100.0	41.0	At1g23680	838978	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
816.0	100.0	50.3	At3g18700	821401	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
812.6	100.0	68.4	At2g10340	815493	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
801.7	100.0	45.2	At4g02740	828188	-	F:unknown;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
799.0	100.0	36.1	At2g21000	3767874	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
795.0	100.0	32.8	At5g32610	833243	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
773.6	100.0	57.3	At5g56620	835763	anac099 (Arabidopsis NAC domain containing protein 99)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
771.4	100.0	55.2	At2g16160	816113	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
755.1	100.0	24.6	At3g63230	825498	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
748.8	100.0	22.8	At3g59860	3769741	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
745.9	100.0	61.3	At5g59660	836087	leucine-rich repeat protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
745.5	100.0	72.0	At3g30843	822865	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
740.7	100.0	57.1	At4g11700	826775	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
739.8	100.0	59.8	At1g51880	841615	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
737.1	100.0	65.4	At1g73690	843704	CDKD1	cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation.	O.I.	C.G.	H.G.
729.1	100.0	113.4	At3g06020	819773	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA	O.I.	C.G.	H.G.
726.0	100.0	28.5	At3g47230	823876	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
715.3	100.0	42.4	At4g12350	826844	MYB42 (myb domain protein 42)	Encodes a putative transcription factor (MYB42).	O.I.	C.G.	H.G.
711.1	100.0	14.8	At2g10840	3768125	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
710.8	100.0	25.5	At2g18320	816347	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
705.8	100.0	45.3	At1g24060	839018	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
704.6	100.0	22.2	At1g39350	840697	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
702.6	100.0	40.8	At3g46910	823844	ubiquitin protein ligase binding	F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MPFO	O.I.	C.G.	H.G.
699.8	100.0	66.7	At1g16910	838262	LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
699.3	100.0	27.2	At3g05540	819719	-	F:unknown;P:biological_process unknown;C:cytoplasm;MFPO	O.I.	C.G.	H.G.
694.4	100.0	72.5	At5g52260	835302	AtMYB19 (myb domain protein 19)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
690.1	100.0	46.5	At5g01070	831898	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
685.6	100.0	49.4	At2g12910	3768701	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
685.1	100.0	42.6	At3g32190	822986	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV	O.I.	C.G.	H.G.
673.4	100.0	45.7	At4g17200	827431	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
667.2	100.0	15.3	At2g12230	3768490	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
665.0	100.0	39.0	At4g18860	827620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
661.1	100.0	84.6	At4g04700	825805	CPK27	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
654.7	100.0	32.9	At3g53910	824558	malate dehydrogenase-related	F:L-malate dehydrogenase activity, catalytic activity;P:malate metabolic process, carbohydrate metabolic process;C:endomembrane system;PMBOF	O.I.	C.G.	H.G.
652.4	100.0	25.2	At3g45820	823725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
647.8	100.0	53.1	At1g53020	841735	UBC26 (UBIQUITIN-CONJUGATING ENZYME 26)	F:ubiquitin-protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:unknown;MFPOV	O.I.	C.G.	H.G.
647.5	100.0	32.1	At5g28240	832902	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
646.5	100.0	53.7	At3g59190	825088	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
643.0	100.0	48.0	At2g14595	3768400	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
637.8	100.0	49.6	At5g48530	834909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
636.2	100.0	70.5	At3g05980	819769	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
636.2	100.0	33.8	At5g07160	830607	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMO	O.I.	C.G.	H.G.
635.8	100.0	79.6	At2g27650	817311	ubiquitin carboxyl-terminal hydrolase-related	F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;POMF	O.I.	C.G.	H.G.
622.5	100.0	52.4	At4g22680	828364	MYB85 (myb domain protein 85)	Encodes a putative transcription factor (MYB85).	O.I.	C.G.	H.G.
619.7	100.0	46.6	At5g32630	3771080	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
618.7	100.0	35.8	At2g11090	815577	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
614.6	100.0	51.1	At5g67570	836893	DG1 (DELAYED GREENING 1)	Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression.	O.I.	C.G.	H.G.
612.7	100.0	79.7	At5g66300	836762	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	O.I.	C.G.	H.G.
607.1	100.0	34.4	At2g13630	815848	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
605.7	100.0	105.4	At3g12940	820479	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
600.5	100.0	137.8	At4g18670	827601	protein binding / structural constituent of cell wall	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPFOVA	O.I.	C.G.	H.G.
599.9	100.0	36.3	At4g03660	825666	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
596.0	100.0	71.3	At5g20560	832178	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
591.7	100.0	52.7	At4g08800	826451	protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MOPBFVA	O.I.	C.G.	H.G.
590.9	100.0	108.7	At4g29650	829086	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
589.6	100.0	34.7	At5g02730	831820	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
583.5	100.0	88.2	At2g41510	818749	CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1)	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
582.6	100.0	27.7	At1g66490	842967	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
582.3	100.0	36.3	At1g24851	839087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
579.9	100.0	60.1	At1g59680	842259	EDA1 (embryo sac development arrest 1)	F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P	O.I.	C.G.	H.G.
578.2	100.0	26.2	At2g15360	816028	galactoside 2-alpha-L-fucosyltransferase	F:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;P	O.I.	C.G.	H.G.
578.1	100.0	24.0	At5g35470	833510	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
574.7	100.0	23.4	At2g12920	3768702	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
574.6	100.0	45.5	At1g24420	839058	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
569.7	100.0	46.1	At2g25030	3768249	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
569.4	100.0	45.1	At3g57370	824904	transcription factor IIB (TFIIB) family protein	F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;AOMFPV	O.I.	C.G.	H.G.
569.1	100.0	18.1	At3g30190	822712	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
563.3	100.0	18.5	At2g10465	815506	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
560.8	100.0	47.0	At2g20070	816526	-	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
557.3	100.0	42.9	At5g38440	833832	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
553.4	100.0	32.9	At5g37610	833739	voltage-gated anion channel	F:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane, endomembrane system;PMF	O.I.	C.G.	H.G.
553.2	100.0	37.1	At1g37140	840631	MCT1 (mei2 C-Terminal RRM only like 1)	a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.	O.I.	C.G.	H.G.
552.7	100.0	112.2	At5g53740	835455	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
552.1	100.0	76.1	At5g04400	830319	anac077 (Arabidopsis NAC domain containing protein 77)	F:DNA binding;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
551.9	100.0	44.5	At5g20310	832153	-	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
549.0	100.0	54.4	At4g10220	826613	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
540.3	100.0	40.8	At2g47150	819328	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
539.4	100.0	25.8	At5g45240	834560	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
535.5	100.0	62.6	At5g55780	835672	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMFO	O.I.	C.G.	H.G.

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GSM ID	GSM184537
Assay name	Whole roots 2hr KCl control treated then frozen, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184537 Assay name Whole roots 2hr KCl control treated then frozen, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184537

Assay name Whole roots 2hr KCl control treated then frozen, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root