CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184528

Assay name Stele root cells 2hr continuous KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
112.4 99.9 59.9 At4g14980 827157 - F:unknown;P:intracellular signaling cascade;C:unknown;POMF O.I. C.G. H.G.
106.0 99.9 79.2 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA O.I. C.G. H.G.
91.6 99.9 22.3 At5g57770 835885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
90.6 99.9 77.8 At5g43890 834411 YUCCA5 Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype O.I. C.G. H.G.
83.8 99.9 219.6 At1g77690 844105 LAX3 (LIKE AUX1 3) Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia. O.I. C.G. H.G.
78.3 99.9 10.2 At1g03010 839556 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM O.I. C.G. H.G.
69.6 99.9 65.7 At5g66700 836803 HB53 Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development. O.I. C.G. H.G.
69.5 99.9 67.5 At3g26610 822270 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
65.0 99.8 52.4 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
64.0 99.8 45.0 At5g03960 830275 IQD12 (IQ-domain 12) F:calmodulin binding;P:biological_process unknown;C:unknown;PBFO O.I. C.G. H.G.
61.3 99.8 33.8 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
61.0 99.8 64.9 At1g25320 839116 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
59.3 99.8 33.4 At1g55380 841985 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
55.2 99.8 44.7 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.0 99.8 20.8 At3g08570 820004 protein binding / signal transducer F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PM O.I. C.G. H.G.
49.4 99.8 80.7 At3g56480 824815 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFV O.I. C.G. H.G.
48.6 99.8 33.8 At4g20210 827768 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PO O.I. C.G. H.G.
47.7 99.8 320.8 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
46.4 99.8 119.8 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
46.1 99.8 394.8 At5g05410 830424 DREB2A Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes. O.I. C.G. H.G.
41.2 99.8 304.5 At5g41670 834169 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV O.I. C.G. H.G.
41.1 99.8 829.0 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
39.3 99.8 72.9 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. O.I. C.G. H.G.
38.7 99.8 97.6 At1g66500 842968 zinc finger (C2H2-type) family protein F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP O.I. C.G. H.G.
38.6 99.8 50.2 At1g71830 843513 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later O.I. C.G. H.G.
37.2 99.7 23.7 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
36.1 99.7 107.9 At4g03190 828045 GRH1 (GRR1-LIKE PROTEIN 1) Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. O.I. C.G. H.G.
35.5 99.7 105.5 At1g19210 838504 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
34.9 99.7 47.5 At3g18710 821402 PUB29 (PLANT U-BOX 29) Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. O.I. C.G. H.G.
34.6 99.7 20.8 At3g14000 820614 ATBRXL2 Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. O.I. C.G. H.G.
34.0 99.7 19.0 At4g20230 827770 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO O.I. C.G. H.G.
33.9 99.7 13.3 At3g27473 822369 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO O.I. C.G. H.G.
33.6 99.7 21.9 At2g37210 818298 - Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950. O.I. C.G. H.G.
32.9 99.7 290.0 At3g12050 820379 Aha1 domain-containing protein F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB O.I. C.G. H.G.
32.6 99.7 259.7 At1g43710 840958 emb1075 (embryo defective 1075) F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity;P:embryonic development ending in seed dormancy, amino acid metabolic process;C:cellular_component unknown;BMOFAPV O.I. C.G. H.G.
32.6 99.7 71.2 At1g30440 839923 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PM O.I. C.G. H.G.
32.3 99.7 273.6 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
32.2 99.7 49.3 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM O.I. C.G. H.G.
32.1 99.7 149.1 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. O.I. C.G. H.G.
31.9 99.7 37.7 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
31.3 99.7 65.0 At3g24520 822047 AT-HSFC1 member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
31.3 99.7 49.6 At4g25870 828693 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POB O.I. C.G. H.G.
31.2 99.7 18.6 At1g50580 841480 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
30.9 99.7 19.4 At3g26550 822263 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO O.I. C.G. H.G.
30.5 99.7 113.1 At3g02840 821225 immediate-early fungal elicitor family protein F:binding;P:response to other organism, response to ozone;C:unknown;PO O.I. C.G. H.G.
29.9 99.7 52.9 At5g49100 834969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPV O.I. C.G. H.G.
29.8 99.7 13.9 At5g50300 835095 xanthine/uracil/vitamin C permease family protein F:transporter activity;P:transport;C:membrane;BOFAPM O.I. C.G. H.G.
29.7 99.7 19.2 At1g77020 844038 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
29.6 99.7 121.9 At2g22480 816781 PFK5 (PHOSPHOFRUCTOKINASE 5) F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAV O.I. C.G. H.G.
29.6 99.7 85.1 At5g01890 831677 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
29.2 99.7 16.1 At3g50870 824251 MNP (MONOPOLE) mutant has Embryo defect; GATA Factor Transcriptional Regulator O.I. C.G. H.G.
29.1 99.7 171.6 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.
29.0 99.7 146.6 At3g28860 822519 ABCB19 Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1. O.I. C.G. H.G.
28.9 99.7 390.0 At1g64190 842724 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAV O.I. C.G. H.G.
28.4 99.7 10.4 At2g27270 817269 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.2 99.7 75.0 At1g72360 843568 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
28.2 99.7 35.2 At1g12610 837817 DDF1 (DWARF AND DELAYED FLOWERING 1) Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor. O.I. C.G. H.G.
27.8 99.7 487.3 At5g53460 835427 GLT1 NADH-dependent glutamate synthase O.I. C.G. H.G.
27.4 99.7 85.9 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
27.2 99.7 27.0 At1g03905 839376 ABC transporter family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOAMFPV O.I. C.G. H.G.
27.1 99.7 89.3 At1g59960 842290 aldo/keto reductase, putative F:oxidoreductase activity;P:response to salt stress;C:unknown;BMOFPA O.I. C.G. H.G.
27.0 99.7 26.7 At5g06740 830563 lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
26.9 99.7 41.3 At1g70560 843393 TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln. O.I. C.G. H.G.
26.9 99.7 37.8 At5g23720 832437 PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1) Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling. O.I. C.G. H.G.
26.8 99.7 77.3 At5g14440 831295 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
26.6 99.7 39.6 At5g35580 833523 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
26.4 99.7 29.2 At1g14480 838010 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
26.3 99.7 432.5 At2g27510 817297 ATFD3 (ferredoxin 3) F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV O.I. C.G. H.G.
26.3 99.7 138.4 At3g62720 825446 XT1 (XYLOSYLTRANSFERASE 1) Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. O.I. C.G. H.G.
26.3 99.7 34.2 At5g27000 832758 ATK4 (ARABIDOPSIS THALIANA KINESIN 4) Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner. O.I. C.G. H.G.
26.2 99.7 71.3 At5g53570 835439 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;OMFBPVA O.I. C.G. H.G.
25.9 99.7 146.8 At1g74030 843741 enolase, putative F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP O.I. C.G. H.G.
25.8 99.7 100.7 At3g10930 820264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
25.6 99.7 108.6 At3g15610 820803 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
25.6 99.7 98.9 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
25.6 99.7 55.1 At1g26930 839583 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA O.I. C.G. H.G.
25.3 99.6 38.9 At4g28720 828993 flavin-containing monooxygenase family protein / FMO family protein F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA O.I. C.G. H.G.
25.3 99.6 38.2 At1g74510 843792 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
25.2 99.6 174.4 At3g20000 821538 TOM40 Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. O.I. C.G. H.G.
25.1 99.6 55.7 At4g37250 829879 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
25.1 99.6 16.9 At1g10750 837618 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;PFB O.I. C.G. H.G.
24.3 99.6 114.6 At1g69490 843282 NAP (NAC-like, activated by AP3/PI) Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. O.I. C.G. H.G.
24.3 99.6 61.2 At5g14760 831328 AO (L-ASPARTATE OXIDASE) At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2 O.I. C.G. H.G.
24.0 99.6 55.2 At2g21050 816640 amino acid permease, putative F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO O.I. C.G. H.G.
23.9 99.6 37.4 At5g06730 830562 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM O.I. C.G. H.G.
23.8 99.6 33.7 At5g23460 832412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.7 99.6 208.4 At3g19390 821473 cysteine proteinase, putative / thiol protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
23.6 99.6 78.6 At5g66650 836797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA O.I. C.G. H.G.
23.5 99.6 216.0 At1g01720 839265 ATAF1 Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA. O.I. C.G. H.G.
23.5 99.6 110.0 At4g12080 826816 DNA-binding family protein F:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBV O.I. C.G. H.G.
23.5 99.6 12.8 At1g01110 839394 IQD18 (IQ-domain 18) F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBV O.I. C.G. H.G.
23.2 99.6 118.4 At1g53840 841821 ATPME1 encodes a pectin methylesterase O.I. C.G. H.G.
23.2 99.6 17.8 At5g53290 835410 CRF3 (CYTOKININ RESPONSE FACTOR 3) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
23.0 99.6 19.4 At1g61840 842481 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
22.9 99.6 32.8 At5g01620 831716 unknown protein F:unknown;P:unknown;C:endomembrane system;PM O.I. C.G. H.G.
22.8 99.6 81.3 At1g50380 841460 prolyl oligopeptidase family protein F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;OBMPAF O.I. C.G. H.G.
22.7 99.6 247.3 At5g52640 835341 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. O.I. C.G. H.G.
22.5 99.6 91.7 At1g28110 839704 SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR) F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB O.I. C.G. H.G.
22.5 99.6 28.6 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
22.3 99.6 187.6 At2g17420 816248 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) NADPH-dependent thioredoxin reductase, major cytosolic isoform O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
112.4	99.9	59.9	At4g14980	827157	-	F:unknown;P:intracellular signaling cascade;C:unknown;POMF	O.I.	C.G.	H.G.
106.0	99.9	79.2	At5g17980	831665	C2 domain-containing protein	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA	O.I.	C.G.	H.G.
91.6	99.9	22.3	At5g57770	835885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
90.6	99.9	77.8	At5g43890	834411	YUCCA5	Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype	O.I.	C.G.	H.G.
83.8	99.9	219.6	At1g77690	844105	LAX3 (LIKE AUX1 3)	Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.	O.I.	C.G.	H.G.
78.3	99.9	10.2	At1g03010	839556	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM	O.I.	C.G.	H.G.
69.6	99.9	65.7	At5g66700	836803	HB53	Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.	O.I.	C.G.	H.G.
69.5	99.9	67.5	At3g26610	822270	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
65.0	99.8	52.4	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
64.0	99.8	45.0	At5g03960	830275	IQD12 (IQ-domain 12)	F:calmodulin binding;P:biological_process unknown;C:unknown;PBFO	O.I.	C.G.	H.G.
61.3	99.8	33.8	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
61.0	99.8	64.9	At1g25320	839116	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
59.3	99.8	33.4	At1g55380	841985	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
55.2	99.8	44.7	At1g47410	841146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.0	99.8	20.8	At3g08570	820004	protein binding / signal transducer	F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PM	O.I.	C.G.	H.G.
49.4	99.8	80.7	At3g56480	824815	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFV	O.I.	C.G.	H.G.
48.6	99.8	33.8	At4g20210	827768	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PO	O.I.	C.G.	H.G.
47.7	99.8	320.8	At1g30510	839930	ATRFNR2 (ROOT FNR 2)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
46.4	99.8	119.8	At1g24280	839044	G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
46.1	99.8	394.8	At5g05410	830424	DREB2A	Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes.	O.I.	C.G.	H.G.
41.2	99.8	304.5	At5g41670	834169	6-phosphogluconate dehydrogenase family protein	F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV	O.I.	C.G.	H.G.
41.1	99.8	829.0	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
39.3	99.8	72.9	At1g55120	841955	ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)	Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
38.7	99.8	97.6	At1g66500	842968	zinc finger (C2H2-type) family protein	F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP	O.I.	C.G.	H.G.
38.6	99.8	50.2	At1g71830	843513	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later	O.I.	C.G.	H.G.
37.2	99.7	23.7	At5g46590	834702	anac096 (Arabidopsis NAC domain containing protein 96)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.1	99.7	107.9	At4g03190	828045	GRH1 (GRR1-LIKE PROTEIN 1)	Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.	O.I.	C.G.	H.G.
35.5	99.7	105.5	At1g19210	838504	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
34.9	99.7	47.5	At3g18710	821402	PUB29 (PLANT U-BOX 29)	Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.	O.I.	C.G.	H.G.
34.6	99.7	20.8	At3g14000	820614	ATBRXL2	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	O.I.	C.G.	H.G.
34.0	99.7	19.0	At4g20230	827770	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO	O.I.	C.G.	H.G.
33.9	99.7	13.3	At3g27473	822369	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO	O.I.	C.G.	H.G.
33.6	99.7	21.9	At2g37210	818298	-	Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.	O.I.	C.G.	H.G.
32.9	99.7	290.0	At3g12050	820379	Aha1 domain-containing protein	F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB	O.I.	C.G.	H.G.
32.6	99.7	259.7	At1g43710	840958	emb1075 (embryo defective 1075)	F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity;P:embryonic development ending in seed dormancy, amino acid metabolic process;C:cellular_component unknown;BMOFAPV	O.I.	C.G.	H.G.
32.6	99.7	71.2	At1g30440	839923	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PM	O.I.	C.G.	H.G.
32.3	99.7	273.6	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
32.2	99.7	49.3	At3g47210	823874	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;PM	O.I.	C.G.	H.G.
32.1	99.7	149.1	At3g61190	825291	BAP1 (BON ASSOCIATION PROTEIN 1)	Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.	O.I.	C.G.	H.G.
31.9	99.7	37.7	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
31.3	99.7	65.0	At3g24520	822047	AT-HSFC1	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
31.3	99.7	49.6	At4g25870	828693	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POB	O.I.	C.G.	H.G.
31.2	99.7	18.6	At1g50580	841480	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
30.9	99.7	19.4	At3g26550	822263	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
30.5	99.7	113.1	At3g02840	821225	immediate-early fungal elicitor family protein	F:binding;P:response to other organism, response to ozone;C:unknown;PO	O.I.	C.G.	H.G.
29.9	99.7	52.9	At5g49100	834969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPV	O.I.	C.G.	H.G.
29.8	99.7	13.9	At5g50300	835095	xanthine/uracil/vitamin C permease family protein	F:transporter activity;P:transport;C:membrane;BOFAPM	O.I.	C.G.	H.G.
29.7	99.7	19.2	At1g77020	844038	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
29.6	99.7	121.9	At2g22480	816781	PFK5 (PHOSPHOFRUCTOKINASE 5)	F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAV	O.I.	C.G.	H.G.
29.6	99.7	85.1	At5g01890	831677	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
29.2	99.7	16.1	At3g50870	824251	MNP (MONOPOLE)	mutant has Embryo defect; GATA Factor Transcriptional Regulator	O.I.	C.G.	H.G.
29.1	99.7	171.6	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.
29.0	99.7	146.6	At3g28860	822519	ABCB19	Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.	O.I.	C.G.	H.G.
28.9	99.7	390.0	At1g64190	842724	6-phosphogluconate dehydrogenase family protein	F:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAV	O.I.	C.G.	H.G.
28.4	99.7	10.4	At2g27270	817269	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.2	99.7	75.0	At1g72360	843568	ethylene-responsive element-binding protein, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
28.2	99.7	35.2	At1g12610	837817	DDF1 (DWARF AND DELAYED FLOWERING 1)	Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.	O.I.	C.G.	H.G.
27.8	99.7	487.3	At5g53460	835427	GLT1	NADH-dependent glutamate synthase	O.I.	C.G.	H.G.
27.4	99.7	85.9	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
27.2	99.7	27.0	At1g03905	839376	ABC transporter family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOAMFPV	O.I.	C.G.	H.G.
27.1	99.7	89.3	At1g59960	842290	aldo/keto reductase, putative	F:oxidoreductase activity;P:response to salt stress;C:unknown;BMOFPA	O.I.	C.G.	H.G.
27.0	99.7	26.7	At5g06740	830563	lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
26.9	99.7	41.3	At1g70560	843393	TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)	TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.	O.I.	C.G.	H.G.
26.9	99.7	37.8	At5g23720	832437	PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)	Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.	O.I.	C.G.	H.G.
26.8	99.7	77.3	At5g14440	831295	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
26.6	99.7	39.6	At5g35580	833523	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
26.4	99.7	29.2	At1g14480	838010	protein binding	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
26.3	99.7	432.5	At2g27510	817297	ATFD3 (ferredoxin 3)	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV	O.I.	C.G.	H.G.
26.3	99.7	138.4	At3g62720	825446	XT1 (XYLOSYLTRANSFERASE 1)	Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.	O.I.	C.G.	H.G.
26.3	99.7	34.2	At5g27000	832758	ATK4 (ARABIDOPSIS THALIANA KINESIN 4)	Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner.	O.I.	C.G.	H.G.
26.2	99.7	71.3	At5g53570	835439	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;OMFBPVA	O.I.	C.G.	H.G.
25.9	99.7	146.8	At1g74030	843741	enolase, putative	F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP	O.I.	C.G.	H.G.
25.8	99.7	100.7	At3g10930	820264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
25.6	99.7	108.6	At3g15610	820803	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
25.6	99.7	98.9	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
25.6	99.7	55.1	At1g26930	839583	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA	O.I.	C.G.	H.G.
25.3	99.6	38.9	At4g28720	828993	flavin-containing monooxygenase family protein / FMO family protein	F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA	O.I.	C.G.	H.G.
25.3	99.6	38.2	At1g74510	843792	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
25.2	99.6	174.4	At3g20000	821538	TOM40	Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.	O.I.	C.G.	H.G.
25.1	99.6	55.7	At4g37250	829879	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
25.1	99.6	16.9	At1g10750	837618	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;PFB	O.I.	C.G.	H.G.
24.3	99.6	114.6	At1g69490	843282	NAP (NAC-like, activated by AP3/PI)	Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.	O.I.	C.G.	H.G.
24.3	99.6	61.2	At5g14760	831328	AO (L-ASPARTATE OXIDASE)	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	O.I.	C.G.	H.G.
24.0	99.6	55.2	At2g21050	816640	amino acid permease, putative	F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO	O.I.	C.G.	H.G.
23.9	99.6	37.4	At5g06730	830562	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM	O.I.	C.G.	H.G.
23.8	99.6	33.7	At5g23460	832412	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.7	99.6	208.4	At3g19390	821473	cysteine proteinase, putative / thiol protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
23.6	99.6	78.6	At5g66650	836797	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA	O.I.	C.G.	H.G.
23.5	99.6	216.0	At1g01720	839265	ATAF1	Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.	O.I.	C.G.	H.G.
23.5	99.6	110.0	At4g12080	826816	DNA-binding family protein	F:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBV	O.I.	C.G.	H.G.
23.5	99.6	12.8	At1g01110	839394	IQD18 (IQ-domain 18)	F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBV	O.I.	C.G.	H.G.
23.2	99.6	118.4	At1g53840	841821	ATPME1	encodes a pectin methylesterase	O.I.	C.G.	H.G.
23.2	99.6	17.8	At5g53290	835410	CRF3 (CYTOKININ RESPONSE FACTOR 3)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
23.0	99.6	19.4	At1g61840	842481	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
22.9	99.6	32.8	At5g01620	831716	unknown protein	F:unknown;P:unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
22.8	99.6	81.3	At1g50380	841460	prolyl oligopeptidase family protein	F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;OBMPAF	O.I.	C.G.	H.G.
22.7	99.6	247.3	At5g52640	835341	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.	O.I.	C.G.	H.G.
22.5	99.6	91.7	At1g28110	839704	SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
22.5	99.6	28.6	At3g27150	822334	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
22.3	99.6	187.6	At2g17420	816248	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	NADPH-dependent thioredoxin reductase, major cytosolic isoform	O.I.	C.G.	H.G.

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GSM ID	GSM184528
Assay name	Stele root cells 2hr continuous KNO3 treated, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184528 Assay name Stele root cells 2hr continuous KNO3 treated, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184528

Assay name Stele root cells 2hr continuous KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root