Microarray experiments to specifically-expressed genes

GSM ID GSM184526
Assay name Stele root cells 2hr transitory KNO3 treated, biological rep2
GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
249.3100.063.9At1g61840842481DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.C.G.H.G.
152.199.930.4At3g50180824180unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MPOFBVAO.I.C.G.H.G.
144.399.9239.6At2g30670817617tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
113.599.9178.7At5g22570832320WRKY38member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
106.699.980.3At2g17080816213unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBVO.I.C.G.H.G.
105.899.972.8At4g15370827203BARS1 (BARUOL SYNTHASE 1)Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.O.I.C.G.H.G.
98.299.9540.2At5g06860830577PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.O.I.C.G.H.G.
89.899.91225.7At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
86.799.936.9At4g15360827202CYP705A3member of CYP705AO.I.C.G.H.G.
79.199.988.1At5g41280834129-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;PO.I.C.G.H.G.
70.899.9185.0At3g23190821897lesion inducing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.C.G.H.G.
70.899.983.2At3g12230820403scpl14 (serine carboxypeptidase-like 14)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
68.099.9257.7At2g47550819368pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
64.399.844.1At1g44050841006DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
60.599.8154.2At3g10930820264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
58.199.840.9At5g59930836115DC1 domain-containing protein / UV-B light-insensitive protein, putativeF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMFO.I.C.G.H.G.
57.899.831.9At1g64910842799glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFO.I.C.G.H.G.
56.799.8329.4At3g10720820241pectinesterase, putativeF:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
56.099.837.3At3g11370820309DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
55.999.8127.0At1g29020839776calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:endomembrane system;PMOAFO.I.C.G.H.G.
55.699.8117.9At5g24070832472peroxidase family proteinF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
54.899.847.6At3g27070822325TOM20-1 (translocase outer membrane 20-1)Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteinsO.I.C.G.H.G.
54.099.885.5At1g55120841955ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.O.I.C.G.H.G.
53.599.812.0At3g50190824181unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
53.299.830.6At2g02630814792DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
51.299.89.5At3g28390822468PGP18 (P-GLYCOPROTEIN 18)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
50.899.8331.0At1g30510839930ATRFNR2 (ROOT FNR 2)Encodes a root-type ferredoxin:NADP(H) oxidoreductase.O.I.C.G.H.G.
49.399.8225.5At1g06090837118fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPVO.I.C.G.H.G.
47.899.822.3At1g50050841429pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
47.399.859.1At5g40590834057DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POFO.I.C.G.H.G.
47.099.844.9At5g52710835348heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
46.999.860.8At1g50090841432aminotransferase class IV family proteinF:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
45.599.898.5At2g07708815383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
43.099.8131.4At4g00080828192UNE11 (unfertilized embryo sac 11)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;PO.I.C.G.H.G.
41.699.876.1At4g15300827196CYP702A2a member of the cytochrome P450 gene family. molecular function unknown.O.I.C.G.H.G.
41.399.828.3At3g27950822419early nodule-specific protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
40.899.854.8At5g24410832512glucosamine/galactosamine-6-phosphate isomerase-relatedF:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
40.299.8204.5At2g37540818330short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
38.399.876.7At5g14760831328AO (L-ASPARTATE OXIDASE)At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2O.I.C.G.H.G.
37.499.7100.4At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
36.899.742.6At1g10990837642unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.899.713.7At1g55700842019DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOO.I.C.G.H.G.
35.499.7176.1At5g15320831384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.699.770.3At4g25300828633oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
34.499.713.3At3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
33.899.755.4At2g32620817822ATCSLB02encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
33.599.7325.8At3g02780820960IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.O.I.C.G.H.G.
33.099.733.1At5g48175834870unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
32.599.736.6At1g02430839242ATARFD1B (ADP-ribosylation factor D1B)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.O.I.C.G.H.G.
32.499.786.5At5g20400832162oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.O.I.C.G.H.G.
32.299.731.2At1g14550838017anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
32.199.720.0At1g64920842800glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
32.099.75.9At5g48200834873unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
31.199.733.0At5g57510835855unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
30.599.730.0At1g56680842124glycoside hydrolase family 19 proteinF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
30.099.796.4At1g24280839044G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.O.I.C.G.H.G.
29.599.799.7At2g19590816478ACO1 (ACC OXIDASE 1)encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidaseO.I.C.G.H.G.
29.199.721.1At3g60470825218unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.099.7132.1At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
28.999.735.2At2g37330818310ALS3 (ALUMINUM SENSITIVE 3)Encodes an ABC transporter-like protein, without an ATPase domain, required for aluminum (Al) resistance/tolerance and may function to redistribute accumulated Al away from sensitive tissues in order to protect the growing root from the toxic effects of Al.O.I.C.G.H.G.
28.299.725.6At5g09710830830magnesium transporter CorA-like family proteinF:metal ion transmembrane transporter activity;P:metal ion transport;C:membrane;PFMOO.I.C.G.H.G.
28.299.711.8At4g15350827201CYP705A2member of CYP705AO.I.C.G.H.G.
28.099.742.3At5g15940831451binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
27.999.723.3At2g40470818641LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
27.599.792.9At1g19210838504AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
27.499.7346.0At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.O.I.C.G.H.G.
27.499.738.1At1g17060838276CYP72C1 (CYTOCHROME P450 72C1)Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.O.I.C.G.H.G.
27.399.715.7At1g33610840255protein bindingF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
27.199.7200.3At1g05575837061unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.099.720.3At3g07000819885DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
26.899.793.2At3g07350819923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
26.199.73.4At2g04330814972transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
25.599.716.2At1g61550842449S-locus protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
25.399.611.9At1g42980840896formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
25.199.643.0At5g03510831818zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOO.I.C.G.H.G.
25.099.699.2At1g80240844364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
24.999.682.1At1g16170838186unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.699.624.2At1g13430837903ST4C (SULFOTRANSFERASE 4C)Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.O.I.C.G.H.G.
24.499.6137.0At2g39350818520ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
24.199.643.3At1g78050844140PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPAO.I.C.G.H.G.
24.099.625.2At3g25790822170myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
22.499.6236.0At5g60530836174late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVAO.I.C.G.H.G.
22.399.6250.5At2g31490817707unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;PO.I.C.G.H.G.
21.599.648.9At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
21.599.627.4At4g14390827084ankyrin repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
21.499.615.3At1g10400837580UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOFO.I.C.G.H.G.
21.399.614.8At2g04680815011DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
21.299.670.4At5g28630832966glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
21.299.652.7At5g45440834580disease resistance protein-relatedF:ATP binding;P:apoptosis;C:cellular_component unknown;PFBO.I.C.G.H.G.
21.299.613.0At3g20960821646CYP705A33member of CYP705AO.I.C.G.H.G.
21.199.612.9At3g45530823694DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
21.099.627.6At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
20.999.6368.0At5g01870831705lipid transfer protein, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
20.799.6309.3At1g12110837763NRT1.1Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium.O.I.C.G.H.G.
20.799.672.8At2g23410816873ACPT (Arabidopsis cis-prenyltransferase)encodes cis-prenyltransferaseO.I.C.G.H.G.
20.699.6387.3At5g19440832064cinnamyl-alcohol dehydrogenase, putative (CAD)similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
20.499.625.4At4g10350826627ANAC070 (Arabidopsis NAC domain containing protein 70)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
20.299.6366.1At4g08950826473EXO (EXORDIUM)F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PBO.I.C.G.H.G.
19.899.620.7At1g73340843669electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAVO.I.C.G.H.G.
19.399.6701.1At4g3920083007540S ribosomal protein S25 (RPS25E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOAO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage