CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184525

Assay name Stele root cells 2hr transitory KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
148.8 99.9 14.1 At1g03010 839556 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM O.I. C.G. H.G.
133.0 99.9 26.9 At5g57770 835885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
109.2 99.9 62.9 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
93.2 99.9 110.8 At3g56480 824815 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFV O.I. C.G. H.G.
88.9 99.9 40.7 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
87.2 99.9 52.5 At5g03960 830275 IQD12 (IQ-domain 12) F:calmodulin binding;P:biological_process unknown;C:unknown;PBFO O.I. C.G. H.G.
85.2 99.9 221.3 At1g77690 844105 LAX3 (LIKE AUX1 3) Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia. O.I. C.G. H.G.
81.5 99.9 26.5 At3g08570 820004 protein binding / signal transducer F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PM O.I. C.G. H.G.
79.3 99.9 43.2 At4g20210 827768 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PO O.I. C.G. H.G.
76.6 99.9 55.8 At1g61260 842420 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
68.5 99.9 68.8 At1g25320 839116 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
67.0 99.8 54.7 At5g27000 832758 ATK4 (ARABIDOPSIS THALIANA KINESIN 4) Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner. O.I. C.G. H.G.
64.5 99.8 65.7 At5g43890 834411 YUCCA5 Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype O.I. C.G. H.G.
63.3 99.8 90.1 At1g63420 842648 - F:unknown;P:biological_process unknown;C:unknown;MPFBOV O.I. C.G. H.G.
61.6 99.8 63.5 At2g01950 814726 BRL2 (BRI1-LIKE 2) Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein. O.I. C.G. H.G.
61.0 99.8 50.7 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
60.0 99.8 102.5 At2g27230 817265 LHW (LONESOME HIGHWAY) Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots. O.I. C.G. H.G.
59.7 99.8 62.6 At3g26610 822270 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
52.9 99.8 57.9 At1g70560 843393 TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln. O.I. C.G. H.G.
51.2 99.8 25.2 At1g77020 844038 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
49.8 99.8 442.8 At2g26400 817180 ATARD3 (ACIREDUCTONE DIOXYGENASE 3) Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family. O.I. C.G. H.G.
49.5 99.8 54.2 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA O.I. C.G. H.G.
48.0 99.8 26.2 At2g37210 818298 - Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950. O.I. C.G. H.G.
47.5 99.8 156.4 At4g12080 826816 DNA-binding family protein F:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBV O.I. C.G. H.G.
45.8 99.8 105.9 At5g01890 831677 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
43.3 99.8 19.5 At3g50870 824251 MNP (MONOPOLE) mutant has Embryo defect; GATA Factor Transcriptional Regulator O.I. C.G. H.G.
43.1 99.8 53.1 At1g71830 843513 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later O.I. C.G. H.G.
41.0 99.8 71.2 At4g37250 829879 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
41.0 99.8 50.4 At5g66700 836803 HB53 Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development. O.I. C.G. H.G.
40.9 99.8 80.9 At1g14330 837994 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
40.6 99.8 209.4 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). O.I. C.G. H.G.
40.6 99.8 36.0 At4g14980 827157 - F:unknown;P:intracellular signaling cascade;C:unknown;POMF O.I. C.G. H.G.
39.9 99.8 146.8 At1g69490 843282 NAP (NAC-like, activated by AP3/PI) Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. O.I. C.G. H.G.
39.0 99.8 24.3 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
38.9 99.8 27.9 At5g65240 836649 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
38.8 99.8 806.3 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
38.8 99.8 34.9 At5g25830 832652 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
38.3 99.8 69.7 At2g21050 816640 amino acid permease, putative F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO O.I. C.G. H.G.
37.9 99.8 240.6 At3g51670 824330 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:plasma membrane;MFPO O.I. C.G. H.G.
36.5 99.7 15.3 At5g50300 835095 xanthine/uracil/vitamin C permease family protein F:transporter activity;P:transport;C:membrane;BOFAPM O.I. C.G. H.G.
36.0 99.7 13.6 At3g27473 822369 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO O.I. C.G. H.G.
35.9 99.7 137.0 At2g13820 815865 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PF O.I. C.G. H.G.
35.1 99.7 275.0 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
35.0 99.7 34.8 At3g29770 822677 MES11 (METHYL ESTERASE 11) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
33.6 99.7 43.1 At4g37650 829919 SHR (SHORT ROOT) Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. O.I. C.G. H.G.
32.8 99.7 66.6 At3g24520 822047 AT-HSFC1 member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
32.7 99.7 20.2 At3g14000 820614 ATBRXL2 Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. O.I. C.G. H.G.
32.0 99.7 70.6 At1g30440 839923 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PM O.I. C.G. H.G.
31.9 99.7 180.4 At1g54050 841843 17.4 kDa class III heat shock protein (HSP17.4-CIII) F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
31.2 99.7 70.8 At3g06130 819786 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA O.I. C.G. H.G.
31.2 99.7 55.9 At3g27350 822356 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFB O.I. C.G. H.G.
30.9 99.7 267.7 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
30.9 99.7 38.9 At3g12090 820383 TET6 (TETRASPANIN6) Member of TETRASPANIN family O.I. C.G. H.G.
30.8 99.7 252.3 At1g43710 840958 emb1075 (embryo defective 1075) F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity;P:embryonic development ending in seed dormancy, amino acid metabolic process;C:cellular_component unknown;BMOFAPV O.I. C.G. H.G.
30.7 99.7 280.2 At3g12050 820379 Aha1 domain-containing protein F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB O.I. C.G. H.G.
30.1 99.7 24.6 At5g38280 833810 PR5K putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase O.I. C.G. H.G.
30.0 99.7 96.3 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
29.7 99.7 316.8 At5g05410 830424 DREB2A Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes. O.I. C.G. H.G.
29.6 99.7 148.0 At3g28860 822519 ABCB19 Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1. O.I. C.G. H.G.
29.4 99.7 41.9 At4g28720 828993 flavin-containing monooxygenase family protein / FMO family protein F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA O.I. C.G. H.G.
28.7 99.7 213.8 At1g02840 839262 SR1 SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. O.I. C.G. H.G.
28.7 99.7 66.4 At5g14760 831328 AO (L-ASPARTATE OXIDASE) At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2 O.I. C.G. H.G.
28.7 99.7 44.5 At3g48185 823974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.4 99.7 95.6 At4g03190 828045 GRH1 (GRR1-LIKE PROTEIN 1) Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. O.I. C.G. H.G.
28.4 99.7 14.1 At1g01110 839394 IQD18 (IQ-domain 18) F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBV O.I. C.G. H.G.
28.3 99.7 18.6 At3g26550 822263 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO O.I. C.G. H.G.
28.1 99.7 77.2 At5g54440 835532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
27.9 99.7 12.7 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
27.6 99.7 36.3 At5g23460 832412 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.5 99.7 87.4 At3g52920 824458 unknown protein F:unknown;P:unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
27.5 99.7 35.1 At4g20430 827791 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM O.I. C.G. H.G.
26.3 99.7 188.9 At1g16030 838174 Hsp70b (heat shock protein 70B) F:ATP binding;P:protein folding, response to heat;C:cytosol, cell wall, plasma membrane, chloroplast, membrane;BOMFPVA O.I. C.G. H.G.
25.8 99.7 33.9 At1g10120 837549 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
25.7 99.7 468.6 At5g53460 835427 GLT1 NADH-dependent glutamate synthase O.I. C.G. H.G.
25.0 99.6 33.4 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
24.9 99.6 49.3 At4g32880 829424 ATHB-8 (HOMEOBOX GENE 8) member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems. O.I. C.G. H.G.
24.8 99.6 97.4 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
24.7 99.6 48.1 At5g49100 834969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPV O.I. C.G. H.G.
24.5 99.6 50.2 At2g01830 814714 WOL (WOODEN LEG) Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane O.I. C.G. H.G.
24.4 99.6 16.1 At4g20230 827770 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO O.I. C.G. H.G.
23.8 99.6 13.2 At2g18060 816318 VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. O.I. C.G. H.G.
23.7 99.6 56.7 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. O.I. C.G. H.G.
23.7 99.6 18.5 At4g14650 827115 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;OMFBPVA O.I. C.G. H.G.
23.7 99.6 18.0 At5g53290 835410 CRF3 (CYTOKININ RESPONSE FACTOR 3) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
23.5 99.6 17.5 At2g34060 817967 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
23.2 99.6 93.0 At1g28110 839704 SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR) F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB O.I. C.G. H.G.
23.0 99.6 248.7 At5g52640 835341 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. O.I. C.G. H.G.
23.0 99.6 36.5 At1g74510 843792 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
22.7 99.6 63.9 At3g24240 822011 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
22.6 99.6 225.4 At5g41670 834169 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV O.I. C.G. H.G.
22.6 99.6 13.6 At1g03840 839396 MGP (Magpie) MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations. O.I. C.G. H.G.
22.4 99.6 127.8 At3g62720 825446 XT1 (XYLOSYLTRANSFERASE 1) Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. O.I. C.G. H.G.
22.4 99.6 72.1 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. O.I. C.G. H.G.
22.4 99.6 36.4 At5g35580 833523 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
22.4 99.6 32.6 At1g04520 839502 PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2) F:molecular_function unknown;P:N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport;C:plasmodesma;PBFMO O.I. C.G. H.G.
22.3 99.6 24.4 At4g25380 828641 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
22.2 99.6 20.5 At1g55740 842023 AtSIP1 (Arabidopsis thaliana seed imbibition 1) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO O.I. C.G. H.G.
22.1 99.6 12.6 At2g31900 817748 XIF Encodes an novel myosin isoform. O.I. C.G. H.G.
21.9 99.6 45.8 At1g35550 840451 elongation factor Tu C-terminal domain-containing protein F:GTP binding, translation elongation factor activity;P:translational elongation;C:cellular_component unknown;MFOPA O.I. C.G. H.G.
21.8 99.6 148.7 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
148.8	99.9	14.1	At1g03010	839556	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM	O.I.	C.G.	H.G.
133.0	99.9	26.9	At5g57770	835885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
109.2	99.9	62.9	At1g47410	841146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
93.2	99.9	110.8	At3g56480	824815	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFV	O.I.	C.G.	H.G.
88.9	99.9	40.7	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
87.2	99.9	52.5	At5g03960	830275	IQD12 (IQ-domain 12)	F:calmodulin binding;P:biological_process unknown;C:unknown;PBFO	O.I.	C.G.	H.G.
85.2	99.9	221.3	At1g77690	844105	LAX3 (LIKE AUX1 3)	Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.	O.I.	C.G.	H.G.
81.5	99.9	26.5	At3g08570	820004	protein binding / signal transducer	F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PM	O.I.	C.G.	H.G.
79.3	99.9	43.2	At4g20210	827768	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PO	O.I.	C.G.	H.G.
76.6	99.9	55.8	At1g61260	842420	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
68.5	99.9	68.8	At1g25320	839116	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
67.0	99.8	54.7	At5g27000	832758	ATK4 (ARABIDOPSIS THALIANA KINESIN 4)	Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner.	O.I.	C.G.	H.G.
64.5	99.8	65.7	At5g43890	834411	YUCCA5	Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype	O.I.	C.G.	H.G.
63.3	99.8	90.1	At1g63420	842648	-	F:unknown;P:biological_process unknown;C:unknown;MPFBOV	O.I.	C.G.	H.G.
61.6	99.8	63.5	At2g01950	814726	BRL2 (BRI1-LIKE 2)	Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.	O.I.	C.G.	H.G.
61.0	99.8	50.7	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
60.0	99.8	102.5	At2g27230	817265	LHW (LONESOME HIGHWAY)	Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.	O.I.	C.G.	H.G.
59.7	99.8	62.6	At3g26610	822270	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
52.9	99.8	57.9	At1g70560	843393	TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)	TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.	O.I.	C.G.	H.G.
51.2	99.8	25.2	At1g77020	844038	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
49.8	99.8	442.8	At2g26400	817180	ATARD3 (ACIREDUCTONE DIOXYGENASE 3)	Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD�)family.	O.I.	C.G.	H.G.
49.5	99.8	54.2	At5g17980	831665	C2 domain-containing protein	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA	O.I.	C.G.	H.G.
48.0	99.8	26.2	At2g37210	818298	-	Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.	O.I.	C.G.	H.G.
47.5	99.8	156.4	At4g12080	826816	DNA-binding family protein	F:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBV	O.I.	C.G.	H.G.
45.8	99.8	105.9	At5g01890	831677	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
43.3	99.8	19.5	At3g50870	824251	MNP (MONOPOLE)	mutant has Embryo defect; GATA Factor Transcriptional Regulator	O.I.	C.G.	H.G.
43.1	99.8	53.1	At1g71830	843513	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later	O.I.	C.G.	H.G.
41.0	99.8	71.2	At4g37250	829879	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
41.0	99.8	50.4	At5g66700	836803	HB53	Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.	O.I.	C.G.	H.G.
40.9	99.8	80.9	At1g14330	837994	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
40.6	99.8	209.4	At3g43190	823393	SUS4	Encodes a protein with sucrose synthase activity (SUS4).	O.I.	C.G.	H.G.
40.6	99.8	36.0	At4g14980	827157	-	F:unknown;P:intracellular signaling cascade;C:unknown;POMF	O.I.	C.G.	H.G.
39.9	99.8	146.8	At1g69490	843282	NAP (NAC-like, activated by AP3/PI)	Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.	O.I.	C.G.	H.G.
39.0	99.8	24.3	At5g46590	834702	anac096 (Arabidopsis NAC domain containing protein 96)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.9	99.8	27.9	At5g65240	836649	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
38.8	99.8	806.3	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
38.8	99.8	34.9	At5g25830	832652	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
38.3	99.8	69.7	At2g21050	816640	amino acid permease, putative	F:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMO	O.I.	C.G.	H.G.
37.9	99.8	240.6	At3g51670	824330	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	F:transporter activity;P:transport;C:plasma membrane;MFPO	O.I.	C.G.	H.G.
36.5	99.7	15.3	At5g50300	835095	xanthine/uracil/vitamin C permease family protein	F:transporter activity;P:transport;C:membrane;BOFAPM	O.I.	C.G.	H.G.
36.0	99.7	13.6	At3g27473	822369	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO	O.I.	C.G.	H.G.
35.9	99.7	137.0	At2g13820	815865	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PF	O.I.	C.G.	H.G.
35.1	99.7	275.0	At1g30510	839930	ATRFNR2 (ROOT FNR 2)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
35.0	99.7	34.8	At3g29770	822677	MES11 (METHYL ESTERASE 11)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
33.6	99.7	43.1	At4g37650	829919	SHR (SHORT ROOT)	Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.	O.I.	C.G.	H.G.
32.8	99.7	66.6	At3g24520	822047	AT-HSFC1	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
32.7	99.7	20.2	At3g14000	820614	ATBRXL2	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	O.I.	C.G.	H.G.
32.0	99.7	70.6	At1g30440	839923	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PM	O.I.	C.G.	H.G.
31.9	99.7	180.4	At1g54050	841843	17.4 kDa class III heat shock protein (HSP17.4-CIII)	F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
31.2	99.7	70.8	At3g06130	819786	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVA	O.I.	C.G.	H.G.
31.2	99.7	55.9	At3g27350	822356	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOFB	O.I.	C.G.	H.G.
30.9	99.7	267.7	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
30.9	99.7	38.9	At3g12090	820383	TET6 (TETRASPANIN6)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
30.8	99.7	252.3	At1g43710	840958	emb1075 (embryo defective 1075)	F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity;P:embryonic development ending in seed dormancy, amino acid metabolic process;C:cellular_component unknown;BMOFAPV	O.I.	C.G.	H.G.
30.7	99.7	280.2	At3g12050	820379	Aha1 domain-containing protein	F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB	O.I.	C.G.	H.G.
30.1	99.7	24.6	At5g38280	833810	PR5K	putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase	O.I.	C.G.	H.G.
30.0	99.7	96.3	At1g24280	839044	G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
29.7	99.7	316.8	At5g05410	830424	DREB2A	Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes.	O.I.	C.G.	H.G.
29.6	99.7	148.0	At3g28860	822519	ABCB19	Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.	O.I.	C.G.	H.G.
29.4	99.7	41.9	At4g28720	828993	flavin-containing monooxygenase family protein / FMO family protein	F:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPA	O.I.	C.G.	H.G.
28.7	99.7	213.8	At1g02840	839262	SR1	SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.	O.I.	C.G.	H.G.
28.7	99.7	66.4	At5g14760	831328	AO (L-ASPARTATE OXIDASE)	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	O.I.	C.G.	H.G.
28.7	99.7	44.5	At3g48185	823974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.4	99.7	95.6	At4g03190	828045	GRH1 (GRR1-LIKE PROTEIN 1)	Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.	O.I.	C.G.	H.G.
28.4	99.7	14.1	At1g01110	839394	IQD18 (IQ-domain 18)	F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBV	O.I.	C.G.	H.G.
28.3	99.7	18.6	At3g26550	822263	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
28.1	99.7	77.2	At5g54440	835532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
27.9	99.7	12.7	At4g24180	828519	-	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
27.6	99.7	36.3	At5g23460	832412	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.5	99.7	87.4	At3g52920	824458	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
27.5	99.7	35.1	At4g20430	827791	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM	O.I.	C.G.	H.G.
26.3	99.7	188.9	At1g16030	838174	Hsp70b (heat shock protein 70B)	F:ATP binding;P:protein folding, response to heat;C:cytosol, cell wall, plasma membrane, chloroplast, membrane;BOMFPVA	O.I.	C.G.	H.G.
25.8	99.7	33.9	At1g10120	837549	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
25.7	99.7	468.6	At5g53460	835427	GLT1	NADH-dependent glutamate synthase	O.I.	C.G.	H.G.
25.0	99.6	33.4	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
24.9	99.6	49.3	At4g32880	829424	ATHB-8 (HOMEOBOX GENE 8)	member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.	O.I.	C.G.	H.G.
24.8	99.6	97.4	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
24.7	99.6	48.1	At5g49100	834969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPV	O.I.	C.G.	H.G.
24.5	99.6	50.2	At2g01830	814714	WOL (WOODEN LEG)	Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane	O.I.	C.G.	H.G.
24.4	99.6	16.1	At4g20230	827770	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO	O.I.	C.G.	H.G.
23.8	99.6	13.2	At2g18060	816318	VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1)	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	O.I.	C.G.	H.G.
23.7	99.6	56.7	At1g55120	841955	ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)	Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.	O.I.	C.G.	H.G.
23.7	99.6	18.5	At4g14650	827115	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;OMFBPVA	O.I.	C.G.	H.G.
23.7	99.6	18.0	At5g53290	835410	CRF3 (CYTOKININ RESPONSE FACTOR 3)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
23.5	99.6	17.5	At2g34060	817967	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
23.2	99.6	93.0	At1g28110	839704	SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
23.0	99.6	248.7	At5g52640	835341	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.	O.I.	C.G.	H.G.
23.0	99.6	36.5	At1g74510	843792	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
22.7	99.6	63.9	At3g24240	822011	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
22.6	99.6	225.4	At5g41670	834169	6-phosphogluconate dehydrogenase family protein	F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV	O.I.	C.G.	H.G.
22.6	99.6	13.6	At1g03840	839396	MGP (Magpie)	MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.	O.I.	C.G.	H.G.
22.4	99.6	127.8	At3g62720	825446	XT1 (XYLOSYLTRANSFERASE 1)	Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.	O.I.	C.G.	H.G.
22.4	99.6	72.1	At5g43810	834403	ZLL (ZWILLE)	Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.	O.I.	C.G.	H.G.
22.4	99.6	36.4	At5g35580	833523	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
22.4	99.6	32.6	At1g04520	839502	PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2)	F:molecular_function unknown;P:N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport;C:plasmodesma;PBFMO	O.I.	C.G.	H.G.
22.3	99.6	24.4	At4g25380	828641	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
22.2	99.6	20.5	At1g55740	842023	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	O.I.	C.G.	H.G.
22.1	99.6	12.6	At2g31900	817748	XIF	Encodes an novel myosin isoform.	O.I.	C.G.	H.G.
21.9	99.6	45.8	At1g35550	840451	elongation factor Tu C-terminal domain-containing protein	F:GTP binding, translation elongation factor activity;P:translational elongation;C:cellular_component unknown;MFOPA	O.I.	C.G.	H.G.
21.8	99.6	148.7	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.

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GSM ID	GSM184525
Assay name	Stele root cells 2hr transitory KNO3 treated, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184525 Assay name Stele root cells 2hr transitory KNO3 treated, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184525

Assay name Stele root cells 2hr transitory KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root