Microarray experiments to specifically-expressed genes

GSM ID GSM184522
Assay name Stele root cells 2hr KCl control treated, biological rep1
GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
196.7100.0110.5At5g66700836803HB53Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.O.I.C.G.H.G.
119.999.961.9At4g14980827157-F:unknown;P:intracellular signaling cascade;C:unknown;POMFO.I.C.G.H.G.
106.799.939.1At2g37210818298-Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.O.I.C.G.H.G.
92.199.941.5At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
75.099.910.0At1g03010839556phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMO.I.C.G.H.G.
73.599.966.0At5g17980831665C2 domain-containing proteinF:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVAO.I.C.G.H.G.
72.599.997.8At3g56480824815myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFVO.I.C.G.H.G.
64.399.852.0At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
64.299.8386.1At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
56.699.861.5At5g43890834411YUCCA5Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotypeO.I.C.G.H.G.
55.699.877.3At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
49.599.839.6At5g03960830275IQD12 (IQ-domain 12)F:calmodulin binding;P:biological_process unknown;C:unknown;PBFOO.I.C.G.H.G.
48.599.815.9At3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
48.399.855.3At1g70560843393TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.O.I.C.G.H.G.
46.599.815.9At5g57770835885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
45.699.840.6At1g47410841146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
44.999.823.4At3g26550822263DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOO.I.C.G.H.G.
44.699.8160.2At1g77690844105LAX3 (LIKE AUX1 3)Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.O.I.C.G.H.G.
44.099.873.6At3g21420821696oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
43.899.844.2At1g10120837549DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
43.299.8215.8At3g43190823393SUS4Encodes a protein with sucrose synthase activity (SUS4).O.I.C.G.H.G.
42.699.854.3At1g25320839116leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
40.199.842.3At5g27000832758ATK4 (ARABIDOPSIS THALIANA KINESIN 4)Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner.O.I.C.G.H.G.
39.599.832.5At1g03905839376ABC transporter family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOAMFPVO.I.C.G.H.G.
38.599.816.4At1g01110839394IQD18 (IQ-domain 18)F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBVO.I.C.G.H.G.
38.499.815.7At5g50300835095xanthine/uracil/vitamin C permease family proteinF:transporter activity;P:transport;C:membrane;BOFAPMO.I.C.G.H.G.
38.099.8103.8At1g35910840493trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFAO.I.C.G.H.G.
37.999.887.0At1g72360843568ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
37.599.7384.4At2g26400817180ATARD3 (ACIREDUCTONE DIOXYGENASE 3)Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARDí)family.O.I.C.G.H.G.
34.499.720.7At1g77020844038DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
34.199.7755.0At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
33.699.7134.7At1g69490843282NAP (NAC-like, activated by AP3/PI)Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.O.I.C.G.H.G.
32.799.738.2At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
31.899.775.6At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
31.399.716.4At3g08570820004protein binding / signal transducerF:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PMO.I.C.G.H.G.
31.299.733.7At3g27150822334kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
30.199.772.7At2g27230817265LHW (LONESOME HIGHWAY)Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.O.I.C.G.H.G.
30.099.713.2At1g73780843713protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
29.799.752.7At5g49100834969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPVO.I.C.G.H.G.
29.499.726.3At4g20210827768terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;POO.I.C.G.H.G.
29.099.7110.9At4g17260827440L-lactate dehydrogenase, putativeF:in 6 functions;P:response to salt stress, response to abscisic acid stimulus;C:plasma membrane;BOMFPAO.I.C.G.H.G.
27.599.736.3At5g23460832412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.399.736.2At3g26760822289short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
26.199.739.5At4g28720828993flavin-containing monooxygenase family protein / FMO family proteinF:oxidoreductase activity, monooxygenase activity;P:unknown;C:unknown;BOFMPAO.I.C.G.H.G.
26.099.7257.9At3g12050820379Aha1 domain-containing proteinF:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPBO.I.C.G.H.G.
25.999.718.0At3g14000820614ATBRXL2Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.O.I.C.G.H.G.
25.899.7109.3At3g57010824868strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOAO.I.C.G.H.G.
25.199.683.9At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
25.199.624.0At5g62260836347DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFVOBO.I.C.G.H.G.
24.999.621.5At1g07260837237UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
24.899.616.8At1g10750837618unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;PFBO.I.C.G.H.G.
24.599.656.1At1g63420842648-F:unknown;P:biological_process unknown;C:unknown;MPFBOVO.I.C.G.H.G.
24.499.633.0At4g20430827791subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAMO.I.C.G.H.G.
23.999.627.4At5g25830832652zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
23.599.661.4At3g06130819786heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cell wall;MBOPFVAO.I.C.G.H.G.
23.399.6276.7At5g59910836113HTB4F:DNA binding;P:nucleosome assembly;C:nucleolus;MOPFBO.I.C.G.H.G.
23.199.6130.7At3g28860822519ABCB19Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.O.I.C.G.H.G.
22.899.674.7At5g01890831677leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
22.799.625.3At3g15240820755--O.I.C.G.H.G.
22.699.653.5At2g21050816640amino acid permease, putativeF:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMOO.I.C.G.H.G.
22.499.672.0At5g43810834403ZLL (ZWILLE)Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.O.I.C.G.H.G.
22.499.620.5At1g55380841985DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVAO.I.C.G.H.G.
22.499.614.0At3g50870824251MNP (MONOPOLE)mutant has Embryo defect; GATA Factor Transcriptional RegulatorO.I.C.G.H.G.
22.399.6175.8At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.999.682.9At1g19210838504AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
21.899.642.5At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
21.799.6100.0At3g15610820803transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.C.G.H.G.
21.699.6114.1At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
21.699.632.9At4g15370827203BARS1 (BARUOL SYNTHASE 1)Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.O.I.C.G.H.G.
21.599.6181.2At3g51670824330SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:plasma membrane;MFPOO.I.C.G.H.G.
21.199.684.3At2g19590816478ACO1 (ACC OXIDASE 1)encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidaseO.I.C.G.H.G.
21.099.6123.5At3g62720825446XT1 (XYLOSYLTRANSFERASE 1)Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.O.I.C.G.H.G.
21.099.631.0At5g26731832715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.799.640.6At3g56760824843calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane, membrane;MOPFBVAO.I.C.G.H.G.
20.799.637.7At3g48185823974unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.799.633.9At4g37650829919SHR (SHORT ROOT)Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.O.I.C.G.H.G.
20.799.619.7At1g55740842023AtSIP1 (Arabidopsis thaliana seed imbibition 1)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOO.I.C.G.H.G.
20.399.6232.3At1g04430839522dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBOO.I.C.G.H.G.
20.399.655.6At5g45600834599GAS41The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.O.I.C.G.H.G.
20.299.621.3At5g42060834211unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.299.615.0At1g50580841480glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
19.899.687.0At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
19.899.679.8At4g03190828045GRH1 (GRR1-LIKE PROTEIN 1)Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.O.I.C.G.H.G.
19.899.655.5At1g30440839923phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PMO.I.C.G.H.G.
19.899.636.0At3g26610822270polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
19.899.628.5At5g12330831108LRP1 (LATERAL ROOT PRIMORDIUM 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.O.I.C.G.H.G.
19.799.635.9At2g01950814726BRL2 (BRI1-LIKE 2)Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.O.I.C.G.H.G.
19.699.616.3At5g53290835410CRF3 (CYTOKININ RESPONSE FACTOR 3)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
19.399.661.2At5g53570835439RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;OMFBPVAO.I.C.G.H.G.
19.299.630.4At1g56020842053unknown proteinF:unknown;P:unknown;C:unknown;OMFBPVO.I.C.G.H.G.
19.199.634.5At5g57410835847unknown proteinF:unknown;P:response to cadmium ion;C:unknown;MOFBPAVO.I.C.G.H.G.
19.199.610.5At4g24180828519-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
19.099.599.0At4g12080826816DNA-binding family proteinF:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBVO.I.C.G.H.G.
18.999.533.3At5g06730830562peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBMO.I.C.G.H.G.
18.799.542.3At1g35550840451elongation factor Tu C-terminal domain-containing proteinF:GTP binding, translation elongation factor activity;P:translational elongation;C:cellular_component unknown;MFOPAO.I.C.G.H.G.
18.699.540.5At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAO.I.C.G.H.G.
18.599.547.8At4g37250829879leucine-rich repeat family protein / protein kinase family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
18.499.565.0At2g37050818281kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
18.499.545.3At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
18.299.529.8At3g23470821928cyclopropane-fatty-acyl-phospholipid synthaseF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAMO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage