CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184511

Assay name Pericycle root cells 2hr continuous KNO3 treated, biological rep3

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
330.6 100.0 155.9 At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
270.1 100.0 57.9 At1g64920 842800 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
269.8 100.0 770.2 At3g14940 820723 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. O.I. C.G. H.G.
198.3 100.0 879.1 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
186.5 100.0 634.1 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
127.0 99.9 123.2 At1g59171 842233 ATP binding / inositol pentakisphosphate 2-kinase F:inositol pentakisphosphate 2-kinase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
110.6 99.9 324.5 At3g11340 820307 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
109.0 99.9 6.6 At4g04420 3769951 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
103.5 99.9 7.1 At4g08880 826465 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
95.8 99.9 5.3 At4g07620 3770532 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
92.5 99.9 9.1 At3g44080 823526 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
91.6 99.9 168.3 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
86.7 99.9 7.6 At4g08190 826369 Ras-related GTP-binding protein, putative F:GTP binding;P:small GTPase mediated signal transduction;C:cellular_component unknown;MPOF O.I. C.G. H.G.
84.3 99.9 127.4 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family O.I. C.G. H.G.
84.1 99.9 39.2 At5g03210 831903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
82.9 99.9 6.6 At1g63400 842646 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
77.0 99.9 24.1 At5g52260 835302 AtMYB19 (myb domain protein 19) Member of the R2R3 factor gene family. O.I. C.G. H.G.
75.8 99.9 186.8 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
72.1 99.9 1098.5 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
69.2 99.9 6.8 At2g03320 814861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
68.2 99.9 450.0 At5g06860 830577 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection. O.I. C.G. H.G.
68.0 99.9 26.9 At2g38300 818410 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF O.I. C.G. H.G.
66.1 99.8 56.8 At5g38540 833842 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
62.6 99.8 45.5 At3g13090 820497 ATMRP8 member of MRP subfamily O.I. C.G. H.G.
61.7 99.8 33.0 At1g64910 842799 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOF O.I. C.G. H.G.
59.3 99.8 7.6 At2g10440 815503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV O.I. C.G. H.G.
56.8 99.8 239.0 At3g43800 823491 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
55.4 99.8 15.6 At4g35660 829718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBO O.I. C.G. H.G.
54.0 99.8 3.1 At2g15190 3768611 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
51.9 99.8 101.8 At1g72360 843568 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. O.I. C.G. H.G.
51.5 99.8 415.5 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
51.0 99.8 4.8 At2g09960 3768104 transposable element gene pseudogene of unknown protein O.I. C.G. H.G.
50.7 99.8 43.0 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
50.6 99.8 34.2 At1g26960 839587 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
50.0 99.8 49.7 At5g66310 836763 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA O.I. C.G. H.G.
49.8 99.8 87.5 At5g14760 831328 AO (L-ASPARTATE OXIDASE) At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2 O.I. C.G. H.G.
49.2 99.8 23.4 At1g50580 841480 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
48.3 99.8 44.7 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins O.I. C.G. H.G.
48.3 99.8 9.4 At4g10820 826678 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.1 99.8 145.6 At3g62270 825400 anion exchange family protein F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV O.I. C.G. H.G.
46.7 99.8 13.6 At5g38790 833870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
46.4 99.8 135.0 At3g10930 820264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
45.5 99.8 23.9 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. O.I. C.G. H.G.
44.9 99.8 19.4 At2g02580 814788 CYP71B9 member of CYP71B O.I. C.G. H.G.
44.4 99.8 65.9 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
44.1 99.8 9.7 At2g02690 814798 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PFMO O.I. C.G. H.G.
43.6 99.8 43.2 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
43.4 99.8 25.2 At4g25560 828661 AtMYB18 (myb domain protein 18) Member of the R2R3 factor gene family. O.I. C.G. H.G.
43.3 99.8 29.5 At2g30660 817616 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
41.4 99.8 55.9 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM O.I. C.G. H.G.
40.1 99.8 166.8 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. O.I. C.G. H.G.
39.7 99.8 6.8 At5g57310 835836 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.4 99.8 197.4 At5g40850 834085 UPM1 (UROPHORPHYRIN METHYLASE 1) Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine. O.I. C.G. H.G.
37.5 99.7 20.8 At5g05900 830475 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
37.1 99.7 435.1 At5g17330 831599 GAD Encodes one of two isoforms of glutamate decarboxylase. O.I. C.G. H.G.
36.3 99.7 373.1 At5g13420 831183 transaldolase, putative F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF O.I. C.G. H.G.
36.3 99.7 20.2 At5g43690 834389 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
36.1 99.7 2.7 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
35.5 99.7 8.5 At3g06640 819844 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOBFVA O.I. C.G. H.G.
35.0 99.7 547.0 At5g53460 835427 GLT1 NADH-dependent glutamate synthase O.I. C.G. H.G.
34.4 99.7 317.1 At4g21830 828271 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
34.4 99.7 225.7 At1g05575 837061 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.4 99.7 17.5 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA O.I. C.G. H.G.
34.3 99.7 9.8 At4g19000 827636 IWS1 C-terminus family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
34.3 99.7 5.6 At2g18320 816347 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.1 99.7 13.6 At1g28170 839711 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF O.I. C.G. H.G.
33.6 99.7 382.8 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
33.3 99.7 21.9 At2g17070 816212 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
33.2 99.7 335.1 At5g05410 830424 DREB2A Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes. O.I. C.G. H.G.
33.1 99.7 433.4 At2g15620 816055 NIR1 (NITRITE REDUCTASE 1) involved in the second step of nitrate assimilation O.I. C.G. H.G.
33.1 99.7 114.7 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
32.9 99.7 10.8 At1g21390 838738 emb2170 (embryo defective 2170) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POM O.I. C.G. H.G.
32.8 99.7 70.1 At2g48010 819413 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) receptor-like serine/threonine kinase (RKF3) O.I. C.G. H.G.
32.5 99.7 18.1 At2g44580 819066 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
32.3 99.7 58.6 At5g15580 831411 LNG1 (LONGIFOLIA1) Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function. O.I. C.G. H.G.
32.0 99.7 410.5 At1g64190 842724 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAV O.I. C.G. H.G.
31.7 99.7 11.8 At1g07550 837269 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
31.5 99.7 94.5 At1g35910 840493 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA O.I. C.G. H.G.
31.4 99.7 85.0 At5g20400 832162 oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. O.I. C.G. H.G.
31.3 99.7 471.8 At2g27510 817297 ATFD3 (ferredoxin 3) F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV O.I. C.G. H.G.
31.1 99.7 17.9 At1g61550 842449 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
30.9 99.7 58.8 At5g23220 832386 NIC3 (NICOTINAMIDASE 3) F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFP O.I. C.G. H.G.
30.9 99.7 7.5 At1g47780 841190 acyl-protein thioesterase-related F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
30.7 99.7 2.6 At4g08660 3770101 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.6 99.7 4.6 At4g16910 3770503 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.5 99.7 6.7 At2g31910 817749 ATCHX21 (CATION/H+ EXCHANGER 21) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
30.5 99.7 5.5 At2g24880 817025 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
30.4 99.7 10.5 At3g29020 822542 MYB110 (myb domain protein 110) Encodes a putative transcription factor (MYB110). O.I. C.G. H.G.
30.3 99.7 18.2 At5g38350 833817 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFA O.I. C.G. H.G.
29.6 99.7 8.6 At5g50540 835122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.6 99.7 7.4 At5g30420 3770955 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.5 99.7 352.8 At1g63940 842697 monodehydroascorbate reductase, putative F:ATP binding;P:response to cadmium ion, response to cold;C:mitochondrion, stromule, chloroplast stroma, chloroplast;BOMFAP O.I. C.G. H.G.
29.5 99.7 9.2 At3g59440 825113 calcium-binding protein, putative F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBV O.I. C.G. H.G.
29.4 99.7 144.4 At5g13110 831150 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
29.4 99.7 11.7 At3g01175 820400 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
29.3 99.7 8.1 At2g13910 3768458 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.1 99.7 255.7 At5g41670 834169 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV O.I. C.G. H.G.
28.9 99.7 23.8 At2g21900 816726 WRKY59 member of WRKY Transcription Factor; Group II-c O.I. C.G. H.G.
28.6 99.7 143.3 At3g19240 821458 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM O.I. C.G. H.G.
28.6 99.7 41.6 At2g17080 816213 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
330.6	100.0	155.9	At5g24410	832512	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
270.1	100.0	57.9	At1g64920	842800	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
269.8	100.0	770.2	At3g14940	820723	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.	O.I.	C.G.	H.G.
198.3	100.0	879.1	At4g30170	829140	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
186.5	100.0	634.1	At1g30510	839930	ATRFNR2 (ROOT FNR 2)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
127.0	99.9	123.2	At1g59171	842233	ATP binding / inositol pentakisphosphate 2-kinase	F:inositol pentakisphosphate 2-kinase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
110.6	99.9	324.5	At3g11340	820307	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
109.0	99.9	6.6	At4g04420	3769951	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
103.5	99.9	7.1	At4g08880	826465	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
95.8	99.9	5.3	At4g07620	3770532	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
92.5	99.9	9.1	At3g44080	823526	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
91.6	99.9	168.3	At1g24280	839044	G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
86.7	99.9	7.6	At4g08190	826369	Ras-related GTP-binding protein, putative	F:GTP binding;P:small GTPase mediated signal transduction;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
84.3	99.9	127.4	At3g27170	822336	CLC-B (CHLORIDE CHANNEL B)	member of Anion channel protein family	O.I.	C.G.	H.G.
84.1	99.9	39.2	At5g03210	831903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
82.9	99.9	6.6	At1g63400	842646	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
77.0	99.9	24.1	At5g52260	835302	AtMYB19 (myb domain protein 19)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
75.8	99.9	186.8	At3g28510	822481	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
72.1	99.9	1098.5	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
69.2	99.9	6.8	At2g03320	814861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
68.2	99.9	450.0	At5g06860	830577	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.	O.I.	C.G.	H.G.
68.0	99.9	26.9	At2g38300	818410	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMF	O.I.	C.G.	H.G.
66.1	99.8	56.8	At5g38540	833842	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
62.6	99.8	45.5	At3g13090	820497	ATMRP8	member of MRP subfamily	O.I.	C.G.	H.G.
61.7	99.8	33.0	At1g64910	842799	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOF	O.I.	C.G.	H.G.
59.3	99.8	7.6	At2g10440	815503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV	O.I.	C.G.	H.G.
56.8	99.8	239.0	At3g43800	823491	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
55.4	99.8	15.6	At4g35660	829718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBO	O.I.	C.G.	H.G.
54.0	99.8	3.1	At2g15190	3768611	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
51.9	99.8	101.8	At1g72360	843568	ethylene-responsive element-binding protein, putative	encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.	O.I.	C.G.	H.G.
51.5	99.8	415.5	At1g49860	841409	ATGSTF14	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
51.0	99.8	4.8	At2g09960	3768104	transposable element gene	pseudogene of unknown protein	O.I.	C.G.	H.G.
50.7	99.8	43.0	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
50.6	99.8	34.2	At1g26960	839587	AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
50.0	99.8	49.7	At5g66310	836763	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA	O.I.	C.G.	H.G.
49.8	99.8	87.5	At5g14760	831328	AO (L-ASPARTATE OXIDASE)	At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2	O.I.	C.G.	H.G.
49.2	99.8	23.4	At1g50580	841480	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
48.3	99.8	44.7	At3g27070	822325	TOM20-1 (translocase outer membrane 20-1)	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	O.I.	C.G.	H.G.
48.3	99.8	9.4	At4g10820	826678	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.1	99.8	145.6	At3g62270	825400	anion exchange family protein	F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV	O.I.	C.G.	H.G.
46.7	99.8	13.6	At5g38790	833870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
46.4	99.8	135.0	At3g10930	820264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
45.5	99.8	23.9	At5g15150	831367	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.	O.I.	C.G.	H.G.
44.9	99.8	19.4	At2g02580	814788	CYP71B9	member of CYP71B	O.I.	C.G.	H.G.
44.4	99.8	65.9	At3g12230	820403	scpl14 (serine carboxypeptidase-like 14)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
44.1	99.8	9.7	At2g02690	814798	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PFMO	O.I.	C.G.	H.G.
43.6	99.8	43.2	At5g52710	835348	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
43.4	99.8	25.2	At4g25560	828661	AtMYB18 (myb domain protein 18)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
43.3	99.8	29.5	At2g30660	817616	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	F:catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
41.4	99.8	55.9	At3g47210	823874	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;PM	O.I.	C.G.	H.G.
40.1	99.8	166.8	At3g61190	825291	BAP1 (BON ASSOCIATION PROTEIN 1)	Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.	O.I.	C.G.	H.G.
39.7	99.8	6.8	At5g57310	835836	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.4	99.8	197.4	At5g40850	834085	UPM1 (UROPHORPHYRIN METHYLASE 1)	Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.	O.I.	C.G.	H.G.
37.5	99.7	20.8	At5g05900	830475	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
37.1	99.7	435.1	At5g17330	831599	GAD	Encodes one of two isoforms of glutamate decarboxylase.	O.I.	C.G.	H.G.
36.3	99.7	373.1	At5g13420	831183	transaldolase, putative	F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF	O.I.	C.G.	H.G.
36.3	99.7	20.2	At5g43690	834389	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
36.1	99.7	2.7	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
35.5	99.7	8.5	At3g06640	819844	protein kinase family protein	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
35.0	99.7	547.0	At5g53460	835427	GLT1	NADH-dependent glutamate synthase	O.I.	C.G.	H.G.
34.4	99.7	317.1	At4g21830	828271	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
34.4	99.7	225.7	At1g05575	837061	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.4	99.7	17.5	At4g11230	826725	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA	O.I.	C.G.	H.G.
34.3	99.7	9.8	At4g19000	827636	IWS1 C-terminus family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
34.3	99.7	5.6	At2g18320	816347	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.1	99.7	13.6	At1g28170	839711	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	O.I.	C.G.	H.G.
33.6	99.7	382.8	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
33.3	99.7	21.9	At2g17070	816212	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
33.2	99.7	335.1	At5g05410	830424	DREB2A	Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes.	O.I.	C.G.	H.G.
33.1	99.7	433.4	At2g15620	816055	NIR1 (NITRITE REDUCTASE 1)	involved in the second step of nitrate assimilation	O.I.	C.G.	H.G.
33.1	99.7	114.7	At2g30670	817617	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
32.9	99.7	10.8	At1g21390	838738	emb2170 (embryo defective 2170)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;POM	O.I.	C.G.	H.G.
32.8	99.7	70.1	At2g48010	819413	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	receptor-like serine/threonine kinase (RKF3)	O.I.	C.G.	H.G.
32.5	99.7	18.1	At2g44580	819066	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
32.3	99.7	58.6	At5g15580	831411	LNG1 (LONGIFOLIA1)	Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function.	O.I.	C.G.	H.G.
32.0	99.7	410.5	At1g64190	842724	6-phosphogluconate dehydrogenase family protein	F:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAV	O.I.	C.G.	H.G.
31.7	99.7	11.8	At1g07550	837269	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
31.5	99.7	94.5	At1g35910	840493	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA	O.I.	C.G.	H.G.
31.4	99.7	85.0	At5g20400	832162	oxidoreductase, 2OG-Fe(II) oxygenase family protein	encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.	O.I.	C.G.	H.G.
31.3	99.7	471.8	At2g27510	817297	ATFD3 (ferredoxin 3)	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV	O.I.	C.G.	H.G.
31.1	99.7	17.9	At1g61550	842449	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
30.9	99.7	58.8	At5g23220	832386	NIC3 (NICOTINAMIDASE 3)	F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFP	O.I.	C.G.	H.G.
30.9	99.7	7.5	At1g47780	841190	acyl-protein thioesterase-related	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
30.7	99.7	2.6	At4g08660	3770101	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.6	99.7	4.6	At4g16910	3770503	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.5	99.7	6.7	At2g31910	817749	ATCHX21 (CATION/H+ EXCHANGER 21)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
30.5	99.7	5.5	At2g24880	817025	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
30.4	99.7	10.5	At3g29020	822542	MYB110 (myb domain protein 110)	Encodes a putative transcription factor (MYB110).	O.I.	C.G.	H.G.
30.3	99.7	18.2	At5g38350	833817	disease resistance protein (NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFA	O.I.	C.G.	H.G.
29.6	99.7	8.6	At5g50540	835122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.6	99.7	7.4	At5g30420	3770955	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.5	99.7	352.8	At1g63940	842697	monodehydroascorbate reductase, putative	F:ATP binding;P:response to cadmium ion, response to cold;C:mitochondrion, stromule, chloroplast stroma, chloroplast;BOMFAP	O.I.	C.G.	H.G.
29.5	99.7	9.2	At3g59440	825113	calcium-binding protein, putative	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MFPOBV	O.I.	C.G.	H.G.
29.4	99.7	144.4	At5g13110	831150	G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
29.4	99.7	11.7	At3g01175	820400	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
29.3	99.7	8.1	At2g13910	3768458	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.1	99.7	255.7	At5g41670	834169	6-phosphogluconate dehydrogenase family protein	F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV	O.I.	C.G.	H.G.
28.9	99.7	23.8	At2g21900	816726	WRKY59	member of WRKY Transcription Factor; Group II-c	O.I.	C.G.	H.G.
28.6	99.7	143.3	At3g19240	821458	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM	O.I.	C.G.	H.G.
28.6	99.7	41.6	At2g17080	816213	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM184511
Assay name	Pericycle root cells 2hr continuous KNO3 treated, biological rep3
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184511 Assay name Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184511

Assay name Pericycle root cells 2hr continuous KNO3 treated, biological rep3

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root