Microarray experiments to specifically-expressed genes

GSM ID GSM184509
Assay name Pericycle root cells 2hr continuous KNO3 treated, biological rep1
GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
288.6100.072.6At3g614008253122-oxoglutarate-dependent dioxygenase, putative1-aminocyclopropane-1-carboxylate oxidase-like proteinO.I.C.G.H.G.
276.4100.0114.5At1g71870843518MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
245.6100.0238.3At4g31910829321transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBOO.I.C.G.H.G.
170.0100.0110.2At1g31050839991transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
153.799.9191.6At4g01430826685nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMFO.I.C.G.H.G.
148.499.965.0At1g75520843888SRS5 (SHI-RELATED SEQUENCE 5)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.O.I.C.G.H.G.
144.099.9147.7At4g37430829897CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2)Encodes a member of the CYP81F cytochrome P450 monooxygenase subfamily.O.I.C.G.H.G.
122.699.972.5At5g52710835348heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
116.399.9189.6At1g24280839044G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.O.I.C.G.H.G.
115.499.9230.5At3g28510822481AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
114.999.9124.6At1g55120841955ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.O.I.C.G.H.G.
108.699.959.9At3g13090820497ATMRP8member of MRP subfamilyO.I.C.G.H.G.
106.799.9183.0At1g19210838504AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
103.699.932.4At2g47560819369zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
98.499.928.5At4g19720827716glycosyl hydrolase family 18 proteinF:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;MBFOVPAO.I.C.G.H.G.
94.999.956.7At4g24670828569TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2)Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.O.I.C.G.H.G.
91.499.9446.0At1g44800841044nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:membrane;BOPAMO.I.C.G.H.G.
90.799.981.1At4g13290826959CYP71A19putative cytochrome P450O.I.C.G.H.G.
89.199.960.7At3g27070822325TOM20-1 (translocase outer membrane 20-1)Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteinsO.I.C.G.H.G.
77.799.9117.8At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOO.I.C.G.H.G.
77.499.961.3At4g01440826697nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMO.I.C.G.H.G.
75.999.990.8At1g21140838710nodulin, putativeF:unknown;P:biological_process unknown;C:unknown;BOPFAO.I.C.G.H.G.
74.499.979.2At1g11330837675S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
74.099.944.4At4g15340827200ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1)Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.O.I.C.G.H.G.
66.999.8128.7At5g62630836384HIPL2 (HIPL2 PROTEIN PRECURSOR)F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;BOPMAFO.I.C.G.H.G.
64.899.8381.8At5g416708341696-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAVO.I.C.G.H.G.
64.299.8372.2At1g30510839930ATRFNR2 (ROOT FNR 2)Encodes a root-type ferredoxin:NADP(H) oxidoreductase.O.I.C.G.H.G.
63.799.855.9At3g12090820383TET6 (TETRASPANIN6)Member of TETRASPANIN familyO.I.C.G.H.G.
61.899.846.4At4g14390827084ankyrin repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
60.799.8202.6At4g33420829479peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBMO.I.C.G.H.G.
59.699.8138.3At1g20823838674zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVO.I.C.G.H.G.
58.699.841.3At5g50120835077transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
56.599.8432.3At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.O.I.C.G.H.G.
55.599.891.8At1g51420841567SPP1 (SUCROSE-PHOSPHATASE 1)F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPOO.I.C.G.H.G.
53.199.843.7At1g68880843221AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFOO.I.C.G.H.G.
52.399.825.3At3g26550822263DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOO.I.C.G.H.G.
52.299.8375.2At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
52.199.828.0At5g28650832971WRKY74member of WRKY Transcription Factor; Group II-dO.I.C.G.H.G.
48.199.832.5At3g01350819616proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFO.I.C.G.H.G.
47.099.8166.7At2g30040817555MAPKKK14member of MEKK subfamilyO.I.C.G.H.G.
47.099.832.6At1g52710841704cytochrome c oxidase-relatedF:cytochrome-c oxidase activity;P:biological_process unknown;C:mitochondrial envelope;MPOFO.I.C.G.H.G.
46.699.820.3At4g36260829783STY2 (STYLISH 2)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves.O.I.C.G.H.G.
45.799.849.3At3g25730822164AP2 domain-containing transcription factor, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;POO.I.C.G.H.G.
44.299.816.0At4g24180828519-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
43.999.877.0At3g24520822047AT-HSFC1member of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
42.999.8458.2At1g48600841281phosphoethanolamine N-methyltransferase 2, putative (NMT2)F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMVO.I.C.G.H.G.
42.899.814.9At3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
42.799.847.4At2g34140817975Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
42.299.8206.8At5g40850834085UPM1 (UROPHORPHYRIN METHYLASE 1)Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.O.I.C.G.H.G.
42.199.852.7At2g21560816695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.C.G.H.G.
41.699.847.1At1g30840839967ATPUP4Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
41.499.840.9At3g12750820457ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.O.I.C.G.H.G.
41.399.879.1At1g79470844285inosine-5'-monophosphate dehydrogenaseF:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPVO.I.C.G.H.G.
41.299.868.4At3g46130823756MYB111 (MYB DOMAIN PROTEIN 111)Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.O.I.C.G.H.G.
40.299.816.1At5g52690835346heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
39.099.888.3At1g72360843568ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
38.799.8123.4At3g10930820264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
38.799.849.3At1g59970842291matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:plasma membrane, anchored to membrane;MOPBVFAO.I.C.G.H.G.
38.699.837.5At3g27150822334kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
38.599.8802.4At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
38.499.836.4At3g29770822677MES11 (METHYL ESTERASE 11)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
38.399.8125.8At4g01450828176nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOMO.I.C.G.H.G.
37.699.7384.8At2g26400817180ATARD3 (ACIREDUCTONE DIOXYGENASE 3)Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARDí)family.O.I.C.G.H.G.
36.999.780.4At2g27230817265LHW (LONESOME HIGHWAY)Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.O.I.C.G.H.G.
36.899.719.3At4g25760828681AtGDU2 (Arabidopsis thaliana GLUTAMINE DUMPER 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.399.792.8At5g43180834336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
36.399.776.1At1g60680842362aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
36.399.748.1At1g60470842342AtGolS4 (Arabidopsis thaliana galactinol synthase 4)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
35.799.796.7At5g66650836797unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOAO.I.C.G.H.G.
35.499.758.7At2g30080817559ZIP6member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.O.I.C.G.H.G.
34.699.771.3At2g16890816190UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PO.I.C.G.H.G.
34.299.7149.7At4g05390825887ATRFNR1 (ROOT FNR 1)Encodes a root-type ferredoxin:NADP(H) oxidoreductase.O.I.C.G.H.G.
34.099.7119.5At3g02840821225immediate-early fungal elicitor family proteinF:binding;P:response to other organism, response to ozone;C:unknown;POO.I.C.G.H.G.
34.099.760.4At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
33.899.781.7At2g40900818687nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BOPAMO.I.C.G.H.G.
33.799.7421.0At1g641908427246-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to salt stress;C:chloroplast, membrane;BOMPFAVO.I.C.G.H.G.
33.799.7167.5At5g45500834586unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.C.G.H.G.
33.699.737.8At5g67160836851EPS1 (ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1)Encodes a member of the BAHD acyltransferase superfamily. Mutants have enhanced susceptibility to virulent and avirulent pathogens and are defective in pathogen induced SA biosynthesis. EPS1 may act upstream of SA biosynthesis as application of SA can rescue the mutant phenotype.O.I.C.G.H.G.
33.399.7118.9At2g42760818876unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
33.299.7129.0At2g22480816781PFK5 (PHOSPHOFRUCTOKINASE 5)F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAVO.I.C.G.H.G.
32.499.721.5At3g47980823953integral membrane HPP family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFPO.I.C.G.H.G.
32.399.770.5At5g14760831328AO (L-ASPARTATE OXIDASE)At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2O.I.C.G.H.G.
31.899.745.5At4g35150829667O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMOO.I.C.G.H.G.
31.399.759.9At4g08780826448peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFMO.I.C.G.H.G.
31.199.7155.8At1g15210838087PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPVO.I.C.G.H.G.
30.999.7267.9At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
30.999.738.5At5g092908307883'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
30.699.7741.3At1g73330843668ATDR4encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.O.I.C.G.H.G.
29.599.737.1At1g56660842121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
29.499.722.0At2g39370818522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
28.099.7327.4At5g13420831183transaldolase, putativeF:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAFO.I.C.G.H.G.
28.099.7179.6At4g11280826730ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6)encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene familyO.I.C.G.H.G.
27.999.715.5At5g66670836799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBO.I.C.G.H.G.
27.799.7126.3At1g74930843832ORA47encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
27.299.772.0At1g08430837363ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1)Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited).O.I.C.G.H.G.
27.099.761.7At3g19990821537unknown proteinF:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PBOO.I.C.G.H.G.
26.999.789.0At1g59960842290aldo/keto reductase, putativeF:oxidoreductase activity;P:response to salt stress;C:unknown;BMOFPAO.I.C.G.H.G.
26.999.744.6At3g49860824148ATARLA1B (ADP-ribosylation factor-like A1B)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.C.G.H.G.
26.999.736.1At1g33700840261catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BPMOAO.I.C.G.H.G.
26.899.7258.9At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFO.I.C.G.H.G.



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