CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184497

Assay name Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
635.5 100.0 44.2 At2g07320 815302 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
546.5 100.0 36.0 At5g43200 834338 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
516.1 100.0 48.2 At3g32150 822979 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMF O.I. C.G. H.G.
473.8 100.0 32.0 At5g54620 835551 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
365.2 100.0 18.6 At2g04380 814977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
361.0 100.0 17.8 At2g19210 816438 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
350.3 100.0 19.3 At2g06110 3768364 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
341.9 100.0 26.6 At2g11090 815577 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
339.2 100.0 28.0 At4g03830 825690 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA O.I. C.G. H.G.
322.5 100.0 39.9 At2g03370 814866 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBF O.I. C.G. H.G.
317.2 100.0 29.9 At4g17700 827491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
314.9 100.0 34.6 At2g27270 817269 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
312.0 100.0 21.6 At4g07330 3769822 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
307.3 100.0 10.4 At2g12230 3768490 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
288.3 100.0 32.5 At3g15250 820756 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV O.I. C.G. H.G.
282.9 100.0 22.1 At5g33380 833316 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
282.5 100.0 29.1 At5g52490 835325 fibrillarin, putative F:RNA binding;P:rRNA processing;C:nucleus;MOFAPBV O.I. C.G. H.G.
275.1 100.0 25.1 At5g39390 833935 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
262.8 100.0 101.1 At2g05530 815102 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
260.8 100.0 57.2 At1g33220 840216 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
254.7 100.0 45.2 At2g39560 818541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
247.3 100.0 31.1 At1g07460 837258 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:anchored to membrane;PBO O.I. C.G. H.G.
245.2 100.0 15.5 At2g10440 815503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV O.I. C.G. H.G.
243.0 100.0 35.4 At5g56770 835779 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
241.4 100.0 39.4 At2g44170 3768737 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
235.2 100.0 19.0 At5g40290 834027 metal-dependent phosphohydrolase HD domain-containing protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOAMPFV O.I. C.G. H.G.
226.5 100.0 25.9 At3g63320 825507 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:unknown;MPOFVB O.I. C.G. H.G.
225.7 100.0 19.6 At4g13760 827010 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
225.2 100.0 88.0 At2g18800 816395 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
223.3 100.0 27.5 At3g30585 3769093 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
220.0 100.0 40.9 At5g55020 835593 MYB120 (MYB DOMAIN PROTEIN 120) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120). O.I. C.G. H.G.
216.6 100.0 23.6 At2g18200 816335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
215.0 100.0 25.4 At2g18270 816343 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
214.1 100.0 30.6 At1g42450 3767252 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
212.6 100.0 29.6 At1g51810 841608 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase F:protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA O.I. C.G. H.G.
212.2 100.0 29.5 At4g25160 828619 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA O.I. C.G. H.G.
210.6 100.0 28.8 At3g61120 825284 AGL13 (AGAMOUS-LIKE 13) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
206.8 100.0 29.8 At3g47740 823928 ATATH2 member of ATH subfamily O.I. C.G. H.G.
198.2 100.0 49.2 At3g32080 822963 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
197.6 100.0 113.9 At3g26610 822270 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
197.3 100.0 21.0 At2g13910 3768458 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
197.0 100.0 14.5 At4g13880 827022 AtRLP48 (Receptor Like Protein 48) F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
195.7 100.0 34.9 At1g59680 842259 EDA1 (embryo sac development arrest 1) F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P O.I. C.G. H.G.
194.7 100.0 23.6 At3g25490 822134 wall-associated kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
183.5 100.0 28.4 At4g11700 826775 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
183.0 100.0 26.0 At2g31780 817735 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
181.5 100.0 45.1 At3g10580 820225 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
180.5 100.0 27.4 At3g04900 819650 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMFBOV O.I. C.G. H.G.
178.0 100.0 20.9 At2g01240 814651 reticulon family protein (RTNLB15) F:unknown;P:biological_process unknown;C:endoplasmic reticulum;PMF O.I. C.G. H.G.
178.0 100.0 17.4 At1g42697 3767272 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
177.7 100.0 65.6 At1g77300 844066 EFS (EARLY FLOWERING IN SHORT DAYS) Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones. O.I. C.G. H.G.
173.8 100.0 22.9 At3g59170 825086 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
173.3 100.0 40.8 At3g19040 821437 HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth. O.I. C.G. H.G.
171.4 100.0 21.7 At1g52840 841718 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
170.5 100.0 15.0 At4g31260 829253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
168.8 100.0 20.5 At2g14160 815902 nucleic acid binding / nucleotide binding F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
168.3 100.0 32.5 At2g18120 816325 SRS4 (SHI-RELATED SEQUENCE 4) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. O.I. C.G. H.G.
167.8 100.0 23.6 At3g24710 822068 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
167.6 100.0 7.6 At1g64020 842705 serpin-related / serine protease inhibitor-related F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
167.5 100.0 25.0 At5g50480 835116 NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
166.2 100.0 23.9 At2g01280 814656 MEE65 (maternal effect embryo arrest 65) F:RNA polymerase II transcription factor activity, cation:chloride symporter activity;P:embryonic development ending in seed dormancy;C:transcription factor complex, nucleus;OMFABPV O.I. C.G. H.G.
165.1 100.0 34.0 At5g61865 836308 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPAF O.I. C.G. H.G.
164.3 99.9 22.5 At1g11220 837663 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
164.2 99.9 19.0 At3g26010 822198 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
162.3 99.9 22.5 At5g12380 831113 annexin, putative F:calcium-dependent phospholipid binding, calcium ion binding;P:unknown;C:unknown;MPOF O.I. C.G. H.G.
162.3 99.9 19.8 At3g42580 823270 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
161.9 99.9 35.3 At3g01080 821213 WRKY58 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
161.5 99.9 31.6 At2g46840 819297 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
159.3 99.9 24.4 At2g34330 817995 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
158.9 99.9 25.1 At3g06280 819802 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
158.3 99.9 41.3 At3g58520 825021 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;P O.I. C.G. H.G.
157.8 99.9 46.7 At1g64700 842778 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
156.2 99.9 30.2 At2g42960 818898 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
155.5 99.9 34.2 At5g06920 830583 FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR) F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
155.1 99.9 33.4 At1g49790 841402 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
154.5 99.9 6.9 At1g26860 837037 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
154.4 99.9 36.6 At5g28010 832871 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
153.6 99.9 13.4 At4g00960 827937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
153.2 99.9 17.8 At5g02210 831804 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO O.I. C.G. H.G.
153.1 99.9 33.3 At5g39370 833933 S-locus glycoprotein, putative F:sugar binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
150.8 99.9 29.5 At2g10340 815493 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
150.2 99.9 9.1 At1g39430 840698 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
149.8 99.9 5.7 At4g08660 3770101 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
148.5 99.9 29.3 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
147.9 99.9 20.6 At2g07490 3768135 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
147.7 99.9 20.1 At1g44980 841063 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
146.4 99.9 27.4 At1g53010 841734 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV O.I. C.G. H.G.
143.5 99.9 39.0 At4g28110 828927 AtMYB41 (myb domain protein 41) Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion. O.I. C.G. H.G.
142.3 99.9 32.7 At3g05480 819713 RAD9 Involved in the regulation of DNA damage repair and homologous recombination. O.I. C.G. H.G.
141.9 99.9 17.3 At3g49510 824113 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
141.2 99.9 35.3 At2g13335 3767778 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
141.0 99.9 36.6 At1g72860 843617 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
140.8 99.9 33.6 At1g74820 843821 cupin family protein F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
140.4 99.9 66.4 At2g27390 817284 proline-rich family protein F:structural constituent of cell wall;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
139.6 99.9 19.4 At5g29020 833029 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
139.2 99.9 6.3 At4g07550 3770366 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
139.0 99.9 17.0 At1g63600 842665 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF O.I. C.G. H.G.
138.2 99.9 16.0 At5g67000 836835 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
138.1 99.9 19.1 At3g11640 820336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
137.9 99.9 10.6 At2g24780 817015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
635.5	100.0	44.2	At2g07320	815302	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
546.5	100.0	36.0	At5g43200	834338	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
516.1	100.0	48.2	At3g32150	822979	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMF	O.I.	C.G.	H.G.
473.8	100.0	32.0	At5g54620	835551	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
365.2	100.0	18.6	At2g04380	814977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
361.0	100.0	17.8	At2g19210	816438	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
350.3	100.0	19.3	At2g06110	3768364	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
341.9	100.0	26.6	At2g11090	815577	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
339.2	100.0	28.0	At4g03830	825690	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA	O.I.	C.G.	H.G.
322.5	100.0	39.9	At2g03370	814866	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBF	O.I.	C.G.	H.G.
317.2	100.0	29.9	At4g17700	827491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
314.9	100.0	34.6	At2g27270	817269	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
312.0	100.0	21.6	At4g07330	3769822	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
307.3	100.0	10.4	At2g12230	3768490	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
288.3	100.0	32.5	At3g15250	820756	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV	O.I.	C.G.	H.G.
282.9	100.0	22.1	At5g33380	833316	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
282.5	100.0	29.1	At5g52490	835325	fibrillarin, putative	F:RNA binding;P:rRNA processing;C:nucleus;MOFAPBV	O.I.	C.G.	H.G.
275.1	100.0	25.1	At5g39390	833935	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
262.8	100.0	101.1	At2g05530	815102	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
260.8	100.0	57.2	At1g33220	840216	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
254.7	100.0	45.2	At2g39560	818541	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
247.3	100.0	31.1	At1g07460	837258	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:anchored to membrane;PBO	O.I.	C.G.	H.G.
245.2	100.0	15.5	At2g10440	815503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV	O.I.	C.G.	H.G.
243.0	100.0	35.4	At5g56770	835779	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
241.4	100.0	39.4	At2g44170	3768737	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
235.2	100.0	19.0	At5g40290	834027	metal-dependent phosphohydrolase HD domain-containing protein	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOAMPFV	O.I.	C.G.	H.G.
226.5	100.0	25.9	At3g63320	825507	protein phosphatase 2C-related / PP2C-related	F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:unknown;MPOFVB	O.I.	C.G.	H.G.
225.7	100.0	19.6	At4g13760	827010	polygalacturonase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
225.2	100.0	88.0	At2g18800	816395	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
223.3	100.0	27.5	At3g30585	3769093	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
220.0	100.0	40.9	At5g55020	835593	MYB120 (MYB DOMAIN PROTEIN 120)	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120).	O.I.	C.G.	H.G.
216.6	100.0	23.6	At2g18200	816335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
215.0	100.0	25.4	At2g18270	816343	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
214.1	100.0	30.6	At1g42450	3767252	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
212.6	100.0	29.6	At1g51810	841608	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA	O.I.	C.G.	H.G.
212.2	100.0	29.5	At4g25160	828619	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA	O.I.	C.G.	H.G.
210.6	100.0	28.8	At3g61120	825284	AGL13 (AGAMOUS-LIKE 13)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
206.8	100.0	29.8	At3g47740	823928	ATATH2	member of ATH subfamily	O.I.	C.G.	H.G.
198.2	100.0	49.2	At3g32080	822963	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
197.6	100.0	113.9	At3g26610	822270	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
197.3	100.0	21.0	At2g13910	3768458	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
197.0	100.0	14.5	At4g13880	827022	AtRLP48 (Receptor Like Protein 48)	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
195.7	100.0	34.9	At1g59680	842259	EDA1 (embryo sac development arrest 1)	F:molecular_function unknown;P:megagametogenesis;C:cellular_component unknown;P	O.I.	C.G.	H.G.
194.7	100.0	23.6	At3g25490	822134	wall-associated kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
183.5	100.0	28.4	At4g11700	826775	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
183.0	100.0	26.0	At2g31780	817735	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
181.5	100.0	45.1	At3g10580	820225	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
180.5	100.0	27.4	At3g04900	819650	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMFBOV	O.I.	C.G.	H.G.
178.0	100.0	20.9	At2g01240	814651	reticulon family protein (RTNLB15)	F:unknown;P:biological_process unknown;C:endoplasmic reticulum;PMF	O.I.	C.G.	H.G.
178.0	100.0	17.4	At1g42697	3767272	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
177.7	100.0	65.6	At1g77300	844066	EFS (EARLY FLOWERING IN SHORT DAYS)	Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.	O.I.	C.G.	H.G.
173.8	100.0	22.9	At3g59170	825086	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
173.3	100.0	40.8	At3g19040	821437	HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2)	Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth.	O.I.	C.G.	H.G.
171.4	100.0	21.7	At1g52840	841718	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
170.5	100.0	15.0	At4g31260	829253	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
168.8	100.0	20.5	At2g14160	815902	nucleic acid binding / nucleotide binding	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
168.3	100.0	32.5	At2g18120	816325	SRS4 (SHI-RELATED SEQUENCE 4)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	O.I.	C.G.	H.G.
167.8	100.0	23.6	At3g24710	822068	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
167.6	100.0	7.6	At1g64020	842705	serpin-related / serine protease inhibitor-related	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
167.5	100.0	25.0	At5g50480	835116	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
166.2	100.0	23.9	At2g01280	814656	MEE65 (maternal effect embryo arrest 65)	F:RNA polymerase II transcription factor activity, cation:chloride symporter activity;P:embryonic development ending in seed dormancy;C:transcription factor complex, nucleus;OMFABPV	O.I.	C.G.	H.G.
165.1	100.0	34.0	At5g61865	836308	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPAF	O.I.	C.G.	H.G.
164.3	99.9	22.5	At1g11220	837663	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
164.2	99.9	19.0	At3g26010	822198	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
162.3	99.9	22.5	At5g12380	831113	annexin, putative	F:calcium-dependent phospholipid binding, calcium ion binding;P:unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
162.3	99.9	19.8	At3g42580	823270	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
161.9	99.9	35.3	At3g01080	821213	WRKY58	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
161.5	99.9	31.6	At2g46840	819297	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
159.3	99.9	24.4	At2g34330	817995	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
158.9	99.9	25.1	At3g06280	819802	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
158.3	99.9	41.3	At3g58520	825021	ubiquitin thiolesterase	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;P	O.I.	C.G.	H.G.
157.8	99.9	46.7	At1g64700	842778	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
156.2	99.9	30.2	At2g42960	818898	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
155.5	99.9	34.2	At5g06920	830583	FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR)	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
155.1	99.9	33.4	At1g49790	841402	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
154.5	99.9	6.9	At1g26860	837037	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
154.4	99.9	36.6	At5g28010	832871	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
153.6	99.9	13.4	At4g00960	827937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
153.2	99.9	17.8	At5g02210	831804	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
153.1	99.9	33.3	At5g39370	833933	S-locus glycoprotein, putative	F:sugar binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
150.8	99.9	29.5	At2g10340	815493	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
150.2	99.9	9.1	At1g39430	840698	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
149.8	99.9	5.7	At4g08660	3770101	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
148.5	99.9	29.3	At4g24180	828519	-	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
147.9	99.9	20.6	At2g07490	3768135	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
147.7	99.9	20.1	At1g44980	841063	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
146.4	99.9	27.4	At1g53010	841734	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV	O.I.	C.G.	H.G.
143.5	99.9	39.0	At4g28110	828927	AtMYB41 (myb domain protein 41)	Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.	O.I.	C.G.	H.G.
142.3	99.9	32.7	At3g05480	819713	RAD9	Involved in the regulation of DNA damage repair and homologous recombination.	O.I.	C.G.	H.G.
141.9	99.9	17.3	At3g49510	824113	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
141.2	99.9	35.3	At2g13335	3767778	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
141.0	99.9	36.6	At1g72860	843617	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
140.8	99.9	33.6	At1g74820	843821	cupin family protein	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
140.4	99.9	66.4	At2g27390	817284	proline-rich family protein	F:structural constituent of cell wall;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
139.6	99.9	19.4	At5g29020	833029	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
139.2	99.9	6.3	At4g07550	3770366	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
139.0	99.9	17.0	At1g63600	842665	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF	O.I.	C.G.	H.G.
138.2	99.9	16.0	At5g67000	836835	DNA binding / transcription factor	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
138.1	99.9	19.1	At3g11640	820336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
137.9	99.9	10.6	At2g24780	817015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM184497
Assay name	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184497 Assay name Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184497

Assay name Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root