Microarray experiments to specifically-expressed genes

GSM ID GSM184485
Assay name Epidermis&Cortex root cells 2hr KCl control treated, biological rep1
GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
225.8100.093.7At2g05530815102glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
198.4100.055.1At3g60470825218unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
97.999.937.3At5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
94.999.996.3At3g12230820403scpl14 (serine carboxypeptidase-like 14)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
94.799.964.1At4g16230827317carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
81.799.9221.8At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
80.499.937.7At1g64910842799glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFO.I.C.G.H.G.
73.699.9119.6At5g20110832133dynein light chain, putativeF:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPFO.I.C.G.H.G.
72.199.931.1At3g21680821722unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
70.399.9127.3At5g20400832162oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.O.I.C.G.H.G.
67.199.8180.1At3g23190821897lesion inducing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.C.G.H.G.
67.199.820.2At3g50180824180unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MPOFBVAO.I.C.G.H.G.
66.599.842.2At4g25380828641zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
66.399.8655.9At5g01870831705lipid transfer protein, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
64.399.85.2At3g28380822467PGP17 (P-GLYCOPROTEIN 17)F:ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
58.099.843.8At5g48175834870unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
55.699.881.5At1g59171842233ATP binding / inositol pentakisphosphate 2-kinaseF:inositol pentakisphosphate 2-kinase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
53.299.825.7At1g64920842800glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
52.899.836.2At3g11370820309DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
50.099.821.0At4g36260829783STY2 (STYLISH 2)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves.O.I.C.G.H.G.
49.099.8194.3At2g39350818520ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
48.999.839.7At3g07600819951heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFVO.I.C.G.H.G.
47.299.828.8At2g02630814792DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
43.599.8130.8At3g10930820264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
42.899.876.1At1g55120841955ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5)Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity.O.I.C.G.H.G.
42.699.8409.5At2g26400817180ATARD3 (ACIREDUCTONE DIOXYGENASE 3)Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARDí)family.O.I.C.G.H.G.
42.499.8250.5At1g05575837061unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
42.299.8129.5At2g30670817617tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
41.499.8832.0At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
41.399.828.4At3g27950822419early nodule-specific protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
40.799.8104.7At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
40.499.834.7At3g11580820331DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
39.699.834.9At5g52670835344heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
39.099.877.0At1g51420841567SPP1 (SUCROSE-PHOSPHATASE 1)F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPOO.I.C.G.H.G.
38.199.825.0At1g61840842481DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.C.G.H.G.
37.499.714.1At5g59070836024glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;BOAPMFO.I.C.G.H.G.
37.499.710.0At3g50190824181unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
37.299.754.1At1g50090841432aminotransferase class IV family proteinF:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
35.499.7119.7At1g5256084168726.5 kDa class I small heat shock protein-like (HSP26.5-P)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:mitochondrion;BPOFAMVO.I.C.G.H.G.
35.499.713.6At1g55700842019DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOO.I.C.G.H.G.
35.099.717.9At3g46720823825UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
34.799.7161.4At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
34.599.737.8At3g27070822325TOM20-1 (translocase outer membrane 20-1)Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteinsO.I.C.G.H.G.
34.499.7319.9At5g06860830577PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.O.I.C.G.H.G.
33.399.749.5At5g24410832512glucosamine/galactosamine-6-phosphate isomerase-relatedF:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
33.199.717.2At1g33610840255protein bindingF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
32.699.719.2At5g43690834389sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.C.G.H.G.
32.599.78.1At3g50170824179unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
31.699.721.5At4g25560828661AtMYB18 (myb domain protein 18)Member of the R2R3 factor gene family.O.I.C.G.H.G.
30.999.7222.7At1g78340844169ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
29.899.753.6At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
29.799.767.6At5g14760831328AO (L-ASPARTATE OXIDASE)At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2O.I.C.G.H.G.
29.599.7173.3At1g5405084184317.4 kDa class III heat shock protein (HSP17.4-CIII)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMO.I.C.G.H.G.
29.499.753.7At5g41280834129-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;PO.I.C.G.H.G.
29.499.738.0At1g10990837642unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.899.795.4At2g45400819146BEN1involved in the regulation of brassinosteroid metabolic pathwayO.I.C.G.H.G.
28.899.734.4At1g24320839048alpha-glucosidase, putativeF:mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity;P:oligosaccharide metabolic process;C:cellular_component unknown;MFOBPAO.I.C.G.H.G.
28.899.719.0At3g47050823858glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAMO.I.C.G.H.G.
28.799.731.6At4g14390827084ankyrin repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
28.499.712.1At3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
28.299.7164.0At3g11340820307UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
28.099.7451.6At5g19440832064cinnamyl-alcohol dehydrogenase, putative (CAD)similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
28.099.714.8At4g01920828197DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
27.999.793.5At1g19210838504AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
27.799.7164.5At2g47550819368pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
27.799.7102.7At5g60950836216COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.299.7228.4At3g10720820241pectinesterase, putativeF:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
27.199.724.3At3g62280825401carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
27.199.710.8At4g11550826759DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
27.099.717.3At1g50580841480glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
26.599.724.8At1g26960839587AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
26.399.78.2At1g47620841171CYP96A8member of CYP96AO.I.C.G.H.G.
26.099.720.0At3g07000819885DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
25.899.717.3At5g05900830475UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
25.799.735.7At5g66310836763kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVAO.I.C.G.H.G.
25.699.735.0At3g50640824227unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
25.699.714.3At5g17960831663DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
25.499.632.4At1g02430839242ATARFD1B (ADP-ribosylation factor D1B)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.O.I.C.G.H.G.
25.399.623.9At1g52710841704cytochrome c oxidase-relatedF:cytochrome-c oxidase activity;P:biological_process unknown;C:mitochondrial envelope;MPOFO.I.C.G.H.G.
25.099.620.0At1g66440842962DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
24.699.644.3At3g56760824843calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane, membrane;MOPFBVAO.I.C.G.H.G.
24.599.616.3At1g66450842963DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
24.299.634.4At5g19340832054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBVO.I.C.G.H.G.
24.299.617.2At3g26550822263DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOO.I.C.G.H.G.
23.999.688.7At5g10830830950embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAO.I.C.G.H.G.
23.999.631.6At2g24610816997ATCNGC14member of Cyclic nucleotide gated channel familyO.I.C.G.H.G.
23.699.69.5At1g66950843013PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVO.I.C.G.H.G.
23.199.640.3At3g48920824053AtMYB45 (myb domain protein 45)Member of the R2R3 factor gene family.O.I.C.G.H.G.
23.199.68.8At5g54050835488DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.C.G.H.G.
23.099.6225.0At3g14940820723ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.O.I.C.G.H.G.
22.999.616.6At2g34830818048WRKY35 (WRKY DNA-binding protein 35)member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
22.899.6341.5At5g17330831599GADEncodes one of two isoforms of glutamate decarboxylase.O.I.C.G.H.G.
22.699.627.3At4g22110828300alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
22.599.654.3At5g45440834580disease resistance protein-relatedF:ATP binding;P:apoptosis;C:cellular_component unknown;PFBO.I.C.G.H.G.
22.599.625.9At2g27000817242CYP705A8member of CYP705AO.I.C.G.H.G.
22.399.654.2At3g11330820306leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MPBOFAVO.I.C.G.H.G.
22.399.628.5At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
22.299.6216.5At4g13180826932short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:response to arsenic;C:unknown;BOMFPAVO.I.C.G.H.G.
22.199.6264.7At3g02780820960IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.O.I.C.G.H.G.
22.199.637.0At5g66700836803HB53Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development.O.I.C.G.H.G.



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