Microarray experiments to specifically-expressed genes

GSM ID GSM184484
Assay name Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3
GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1149.5100.0536.2At5g24070832472peroxidase family proteinF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
988.6100.0370.9At4g15300827196CYP702A2a member of the cytochrome P450 gene family. molecular function unknown.O.I.C.G.H.G.
712.5100.0213.3At5g15940831451binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
602.8100.0195.1At1g12740837830CYP87A2encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
555.9100.0224.5At2g32620817822ATCSLB02encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
456.2100.089.6At2g02630814792DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
442.4100.0118.2At4g10350826627ANAC070 (Arabidopsis NAC domain containing protein 70)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
421.2100.081.3At4g15360827202CYP705A3member of CYP705AO.I.C.G.H.G.
411.4100.095.5At5g60770836198ATNRT2.4member of High affinity nitrate transporter familyO.I.C.G.H.G.
406.1100.074.7At5g51310835205gibberellin 20-oxidase-relatedF:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFMO.I.C.G.H.G.
406.0100.01005.7At5g60530836174late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVAO.I.C.G.H.G.
383.8100.0392.5At4g00080828192UNE11 (unfertilized embryo sac 11)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;PO.I.C.G.H.G.
374.7100.0708.6At1g52050841634jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
367.1100.0218.5At2g43600818962glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
349.7100.0132.3At4g15370827203BARS1 (BARUOL SYNTHASE 1)Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.O.I.C.G.H.G.
349.5100.0414.0At3g06460819823GNS1/SUR4 membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPVO.I.C.G.H.G.
334.6100.0292.8At2g23410816873ACPT (Arabidopsis cis-prenyltransferase)encodes cis-prenyltransferaseO.I.C.G.H.G.
323.5100.0577.7At1g06090837118fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPVO.I.C.G.H.G.
315.3100.0387.7At3g16440820892ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)myrosinase-binding protein-like protein (AtMLP-300B) mRNA,O.I.C.G.H.G.
310.0100.0152.5At2g32610817821ATCSLB01encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
291.0100.098.9At5g16230831483acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOMO.I.C.G.H.G.
278.1100.0697.9At1g52070841636jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
272.0100.0226.1At5g58784835994dehydrodolichyl diphosphate synthaseF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
270.1100.086.4At3g05390819703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABOO.I.C.G.H.G.
267.0100.0453.5At2g39350818520ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
255.0100.0190.9At4g25300828633oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
253.7100.01153.2At1g47600841169BGLU34 (BETA GLUCOSIDASE 34)Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.O.I.C.G.H.G.
247.9100.0103.7At4g16230827317carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
237.7100.0497.5At2g37540818330short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
227.2100.0268.1At2g45400819146BEN1involved in the regulation of brassinosteroid metabolic pathwayO.I.C.G.H.G.
207.2100.070.4At2g34080817969cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
203.6100.0446.1At2g47550819368pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
202.9100.0139.7At3g47400823894pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMAO.I.C.G.H.G.
192.8100.0607.8At3g10720820241pectinesterase, putativeF:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
190.8100.052.0At3g25950822192-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PMO.I.C.G.H.G.
184.1100.0102.4At5g04970830379pectinesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVAO.I.C.G.H.G.
177.4100.055.7At5g56320835731ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
177.2100.029.5At4g15350827201CYP705A2member of CYP705AO.I.C.G.H.G.
175.4100.053.6At1g61840842481DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.C.G.H.G.
173.0100.0511.3At1g52060841635-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
168.5100.070.2At3g20160821560geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAVO.I.C.G.H.G.
167.6100.0202.1At2g41290818728strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFAO.I.C.G.H.G.
162.699.965.2At1g33280840223ANAC015 (Arabidopsis NAC domain containing protein 15)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
161.399.956.1At4g01240827909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
156.599.9247.9At1g80240844364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
151.199.954.2At3g27950822419early nodule-specific protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
140.199.972.9At4g14940827152ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.O.I.C.G.H.G.
135.999.9286.1At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
130.199.9918.5At5g01870831705lipid transfer protein, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
129.299.942.8At5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
126.399.961.8At1g44050841006DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
125.899.952.3At1g73340843669electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAVO.I.C.G.H.G.
125.699.9190.6At5g66280836760GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)GDP-D-mannose 4,6-dehydrataseO.I.C.G.H.G.
124.699.957.5At3g25790822170myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
121.899.979.5At1g14080837968FUT6 (FUCOSYLTRANSFERASE 6)member of Xyloglucan fucosyltransferase familyO.I.C.G.H.G.
119.899.925.0At1g55700842019DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOO.I.C.G.H.G.
118.799.9129.7At2g23630816895sks16 (SKU5 Similar 16)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
110.599.941.8At4g40070830170protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
109.099.952.0At3g11370820309DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
108.199.941.0At1g12600837816-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBAO.I.C.G.H.G.
107.699.950.7At2g37700818347catalytic/ iron ion binding / oxidoreductaseF:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFVO.I.C.G.H.G.
107.099.925.5At3g50180824180unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MPOFBVAO.I.C.G.H.G.
106.599.923.8At5g59070836024glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;BOAPMFO.I.C.G.H.G.
106.199.991.3At3g56060824772glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAO.I.C.G.H.G.
101.899.9144.4At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.O.I.C.G.H.G.
99.999.944.0At2g40470818641LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
98.199.9185.1At3g16150820860L-asparaginase, putative / L-asparagine amidohydrolase, putativeF:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
96.799.927.5At3g45530823694DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
96.099.925.5At1g16160838185WAKL5 (wall associated kinase-like 5)WAK-like kinaseO.I.C.G.H.G.
95.499.9205.9At1g26820839225RNS3 (RIBONUCLEASE 3)Encodes ribonuclease RNS3.O.I.C.G.H.G.
94.999.9177.2At1g52910841724unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
94.299.970.7At1g17060838276CYP72C1 (CYTOCHROME P450 72C1)Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.O.I.C.G.H.G.
93.999.9533.5At5g54370835525late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
90.199.953.3At2g14095815895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFBO.I.C.G.H.G.
86.699.949.9At5g59930836115DC1 domain-containing protein / UV-B light-insensitive protein, putativeF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMFO.I.C.G.H.G.
86.599.978.5At2g47140819327short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
85.199.959.2At1g02430839242ATARFD1B (ADP-ribosylation factor D1B)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.O.I.C.G.H.G.
83.199.970.0At4g11610826766C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
81.499.9457.8At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
81.299.960.0At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
79.899.9146.6At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
78.299.928.5At1g50050841429pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
77.499.914.0At1g47620841171CYP96A8member of CYP96AO.I.C.G.H.G.
76.199.9146.3At5g22570832320WRKY38member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
75.999.953.4At2g02680814797DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.C.G.H.G.
75.499.939.9At1g79580844296SMB (SOMBRERO)NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.O.I.C.G.H.G.
75.099.926.2At3g46720823825UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
74.099.9132.0At5g60520836173late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
72.199.9102.5At5g23530832418AtCXE18 (Arabidopsis thaliana carboxyesterase 18)F:carboxylesterase activity;P:metabolic process;C:unknown;BOFPMAVO.I.C.G.H.G.
70.499.924.7At1g34500840352membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOPFO.I.C.G.H.G.
68.899.946.9At4g14980827157-F:unknown;P:intracellular signaling cascade;C:unknown;POMFO.I.C.G.H.G.
67.199.839.0At5g43040834319DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
66.999.872.6At1g50090841432aminotransferase class IV family proteinF:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
66.799.8149.8At2g19590816478ACO1 (ACC OXIDASE 1)encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidaseO.I.C.G.H.G.
65.699.8113.7At4g27400828848late embryogenesis abundant protein-related / LEA protein-relatedF:unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
64.899.824.1At1g33610840255protein bindingF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
63.899.8435.2At5g06860830577PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.O.I.C.G.H.G.
63.699.867.0At5g57500835854transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOFO.I.C.G.H.G.
63.399.8127.5At2g04160814953AIR3isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.O.I.C.G.H.G.
63.099.864.2At5g18270831945ANAC087F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.



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