CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184483

Assay name Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1187.8 100.0 705.2 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
1140.0 100.0 462.9 At5g58784 835994 dehydrodolichyl diphosphate synthase F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. C.G. H.G.
896.2 100.0 88.2 At1g34500 840352 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOPF O.I. C.G. H.G.
875.7 100.0 473.7 At2g23410 816873 ACPT (Arabidopsis cis-prenyltransferase) encodes cis-prenyltransferase O.I. C.G. H.G.
855.7 100.0 158.2 At3g20160 821560 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV O.I. C.G. H.G.
788.8 100.0 360.2 At4g22640 828360 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
779.9 100.0 273.8 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA O.I. C.G. H.G.
715.9 100.0 201.9 At5g04970 830379 pectinesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA O.I. C.G. H.G.
682.6 100.0 956.3 At1g52050 841634 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
662.0 100.0 182.0 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. O.I. C.G. H.G.
651.8 100.0 243.1 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
641.4 100.0 791.7 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
634.5 100.0 123.1 At2g37700 818347 catalytic/ iron ion binding / oxidoreductase F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV O.I. C.G. H.G.
621.0 100.0 800.4 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV O.I. C.G. H.G.
617.0 100.0 98.4 At4g15360 827202 CYP705A3 member of CYP705A O.I. C.G. H.G.
602.0 100.0 543.4 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV O.I. C.G. H.G.
595.4 100.0 1217.9 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
587.6 100.0 1755.0 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. O.I. C.G. H.G.
585.6 100.0 285.4 At4g15300 827196 CYP702A2 a member of the cytochrome P450 gene family. molecular function unknown. O.I. C.G. H.G.
582.9 100.0 38.4 At1g47620 841171 CYP96A8 member of CYP96A O.I. C.G. H.G.
543.8 100.0 88.6 At2g17070 816212 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
465.0 100.0 125.0 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
435.6 100.0 162.3 At2g17080 816213 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV O.I. C.G. H.G.
432.5 100.0 671.0 At2g37540 818330 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
430.2 100.0 133.2 At1g02430 839242 ATARFD1B (ADP-ribosylation factor D1B) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. O.I. C.G. H.G.
411.1 100.0 175.7 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
410.1 100.0 442.1 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, O.I. C.G. H.G.
402.2 100.0 178.0 At1g50090 841432 aminotransferase class IV family protein F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
394.4 100.0 314.0 At5g24070 832472 peroxidase family protein F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
391.1 100.0 104.0 At3g05390 819703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABO O.I. C.G. H.G.
374.4 100.0 88.6 At2g39180 818503 CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2) F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVA O.I. C.G. H.G.
360.6 100.0 794.8 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
353.0 100.0 396.2 At1g26820 839225 RNS3 (RIBONUCLEASE 3) Encodes ribonuclease RNS3. O.I. C.G. H.G.
349.0 100.0 213.1 At2g43600 818962 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
343.3 100.0 148.1 At5g15940 831451 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
333.3 100.0 1005.3 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
292.5 100.0 664.8 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
278.3 100.0 198.7 At2g23630 816895 sks16 (SKU5 Similar 16) F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
266.9 100.0 32.7 At1g61390 842433 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA O.I. C.G. H.G.
258.8 100.0 192.3 At4g25300 828633 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
237.7 100.0 58.0 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
235.3 100.0 22.4 At1g66030 842916 CYP96A14P encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
228.0 100.0 20.0 At3g28390 822468 PGP18 (P-GLYCOPROTEIN 18) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
226.6 100.0 84.5 At2g14095 815895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB O.I. C.G. H.G.
219.4 100.0 54.9 At5g51310 835205 gibberellin 20-oxidase-related F:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFM O.I. C.G. H.G.
204.7 100.0 87.2 At3g06210 819795 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
203.9 100.0 57.2 At3g45130 823649 LAS1 F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMA O.I. C.G. H.G.
201.4 100.0 79.7 At4g10350 826627 ANAC070 (Arabidopsis NAC domain containing protein 70) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
196.6 100.0 79.2 At4g14980 827157 - F:unknown;P:intracellular signaling cascade;C:unknown;POMF O.I. C.G. H.G.
185.7 100.0 224.9 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
184.3 100.0 40.5 At1g17310 838303 MADS-box protein (AGL100) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
181.8 100.0 706.3 At5g44380 834464 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM O.I. C.G. H.G.
178.0 100.0 605.8 At1g74020 843740 SS2 (STRICTOSIDINE SYNTHASE 2) Encodes AtSS-2 strictosidine synthase. O.I. C.G. H.G.
177.1 100.0 55.8 At2g02630 814792 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
171.7 100.0 321.6 At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
168.4 100.0 274.6 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
168.0 100.0 32.5 At4g26890 828796 MAPKKK16 member of MEKK subfamily O.I. C.G. H.G.
164.8 100.0 145.9 At3g22740 821845 HMT3 homocysteine S-methyltransferase (HMT3) O.I. C.G. H.G.
163.8 99.9 81.2 At1g51260 841549 LPAT3 ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS] O.I. C.G. H.G.
163.2 99.9 161.8 At5g15870 831444 glycosyl hydrolase family 81 protein F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:response to cyclopentenone;C:unknown;FPOMVB O.I. C.G. H.G.
162.2 99.9 557.4 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
160.2 99.9 207.7 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
158.6 99.9 64.9 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
155.4 99.9 27.7 At4g15350 827201 CYP705A2 member of CYP705A O.I. C.G. H.G.
155.3 99.9 76.7 At4g14940 827152 ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1) atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development. O.I. C.G. H.G.
155.3 99.9 67.6 At5g49770 835040 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
154.4 99.9 174.4 At4g27400 828848 late embryogenesis abundant protein-related / LEA protein-related F:unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.
154.1 99.9 33.5 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
152.4 99.9 170.0 At4g37160 829870 sks15 (SKU5 Similar 15) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
147.3 99.9 146.5 At5g23530 832418 AtCXE18 (Arabidopsis thaliana carboxyesterase 18) F:carboxylesterase activity;P:metabolic process;C:unknown;BOFPMAV O.I. C.G. H.G.
145.4 99.9 28.1 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. C.G. H.G.
134.9 99.9 174.5 At1g06080 837117 ADS1 (DELTA 9 DESATURASE 1) homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. O.I. C.G. H.G.
133.9 99.9 180.7 At2g41290 818728 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFA O.I. C.G. H.G.
132.9 99.9 102.2 At3g56060 824772 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
126.9 99.9 47.1 At5g56320 835731 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
125.2 99.9 19.3 At4g35210 829674 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
124.3 99.9 49.2 At3g27950 822419 early nodule-specific protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
124.3 99.9 42.0 At3g25950 822192 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PM O.I. C.G. H.G.
123.1 99.9 219.8 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
122.4 99.9 87.9 At1g12740 837830 CYP87A2 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
120.6 99.9 72.3 At4g16230 827317 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
118.9 99.9 28.3 At1g16160 838185 WAKL5 (wall associated kinase-like 5) WAK-like kinase O.I. C.G. H.G.
118.7 99.9 50.8 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
115.6 99.9 71.6 At1g36060 840510 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
113.4 99.9 111.2 At1g54120 841852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
111.7 99.9 54.1 At1g33280 840223 ANAC015 (Arabidopsis NAC domain containing protein 15) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
110.1 99.9 161.0 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
107.0 99.9 55.4 At5g59930 836115 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF O.I. C.G. H.G.
105.9 99.9 828.9 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
102.5 99.9 34.3 At1g34490 840351 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOF O.I. C.G. H.G.
100.5 99.9 39.7 At2g04500 814991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM O.I. C.G. H.G.
97.9 99.9 539.4 At5g06860 830577 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection. O.I. C.G. H.G.
97.7 99.9 47.1 At5g43040 834319 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO O.I. C.G. H.G.
96.8 99.9 43.4 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
93.3 99.9 35.4 At3g21680 821722 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
92.8 99.9 181.9 At5g23210 832385 SCPL34 F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole, plant-type cell wall;PMFOB O.I. C.G. H.G.
87.7 99.9 30.2 At2g27010 817243 CYP705A9 member of CYP705A O.I. C.G. H.G.
87.5 99.9 47.0 At4g13130 826927 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMO O.I. C.G. H.G.
86.3 99.9 72.1 At1g14220 837983 ribonuclease T2 family protein F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOV O.I. C.G. H.G.
86.0 99.9 36.3 At3g07000 819885 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1187.8	100.0	705.2	At3g49190	824080	condensation domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
1140.0	100.0	462.9	At5g58784	835994	dehydrodolichyl diphosphate synthase	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	C.G.	H.G.
896.2	100.0	88.2	At1g34500	840352	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOPF	O.I.	C.G.	H.G.
875.7	100.0	473.7	At2g23410	816873	ACPT (Arabidopsis cis-prenyltransferase)	encodes cis-prenyltransferase	O.I.	C.G.	H.G.
855.7	100.0	158.2	At3g20160	821560	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV	O.I.	C.G.	H.G.
788.8	100.0	360.2	At4g22640	828360	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
779.9	100.0	273.8	At3g47400	823894	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA	O.I.	C.G.	H.G.
715.9	100.0	201.9	At5g04970	830379	pectinesterase, putative	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA	O.I.	C.G.	H.G.
682.6	100.0	956.3	At1g52050	841634	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
662.0	100.0	182.0	At4g15370	827203	BARS1 (BARUOL SYNTHASE 1)	Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.	O.I.	C.G.	H.G.
651.8	100.0	243.1	At2g32620	817822	ATCSLB02	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
641.4	100.0	791.7	At2g47550	819368	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
634.5	100.0	123.1	At2g37700	818347	catalytic/ iron ion binding / oxidoreductase	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV	O.I.	C.G.	H.G.
621.0	100.0	800.4	At1g06090	837118	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV	O.I.	C.G.	H.G.
617.0	100.0	98.4	At4g15360	827202	CYP705A3	member of CYP705A	O.I.	C.G.	H.G.
602.0	100.0	543.4	At3g06460	819823	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV	O.I.	C.G.	H.G.
595.4	100.0	1217.9	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
587.6	100.0	1755.0	At1g47600	841169	BGLU34 (BETA GLUCOSIDASE 34)	Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.	O.I.	C.G.	H.G.
585.6	100.0	285.4	At4g15300	827196	CYP702A2	a member of the cytochrome P450 gene family. molecular function unknown.	O.I.	C.G.	H.G.
582.9	100.0	38.4	At1g47620	841171	CYP96A8	member of CYP96A	O.I.	C.G.	H.G.
543.8	100.0	88.6	At2g17070	816212	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
465.0	100.0	125.0	At5g16230	831483	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
435.6	100.0	162.3	At2g17080	816213	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV	O.I.	C.G.	H.G.
432.5	100.0	671.0	At2g37540	818330	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
430.2	100.0	133.2	At1g02430	839242	ATARFD1B (ADP-ribosylation factor D1B)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
411.1	100.0	175.7	At2g32610	817821	ATCSLB01	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
410.1	100.0	442.1	At3g16440	820892	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	O.I.	C.G.	H.G.
402.2	100.0	178.0	At1g50090	841432	aminotransferase class IV family protein	F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
394.4	100.0	314.0	At5g24070	832472	peroxidase family protein	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
391.1	100.0	104.0	At3g05390	819703	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABO	O.I.	C.G.	H.G.
374.4	100.0	88.6	At2g39180	818503	CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2)	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVA	O.I.	C.G.	H.G.
360.6	100.0	794.8	At1g52070	841636	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
353.0	100.0	396.2	At1g26820	839225	RNS3 (RIBONUCLEASE 3)	Encodes ribonuclease RNS3.	O.I.	C.G.	H.G.
349.0	100.0	213.1	At2g43600	818962	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
343.3	100.0	148.1	At5g15940	831451	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
333.3	100.0	1005.3	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
292.5	100.0	664.8	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
278.3	100.0	198.7	At2g23630	816895	sks16 (SKU5 Similar 16)	F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
266.9	100.0	32.7	At1g61390	842433	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
258.8	100.0	192.3	At4g25300	828633	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
237.7	100.0	58.0	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
235.3	100.0	22.4	At1g66030	842916	CYP96A14P	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
228.0	100.0	20.0	At3g28390	822468	PGP18 (P-GLYCOPROTEIN 18)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
226.6	100.0	84.5	At2g14095	815895	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB	O.I.	C.G.	H.G.
219.4	100.0	54.9	At5g51310	835205	gibberellin 20-oxidase-related	F:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFM	O.I.	C.G.	H.G.
204.7	100.0	87.2	At3g06210	819795	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
203.9	100.0	57.2	At3g45130	823649	LAS1	F:lanosterol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:cellular_component unknown;BPOFMA	O.I.	C.G.	H.G.
201.4	100.0	79.7	At4g10350	826627	ANAC070 (Arabidopsis NAC domain containing protein 70)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
196.6	100.0	79.2	At4g14980	827157	-	F:unknown;P:intracellular signaling cascade;C:unknown;POMF	O.I.	C.G.	H.G.
185.7	100.0	224.9	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
184.3	100.0	40.5	At1g17310	838303	MADS-box protein (AGL100)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
181.8	100.0	706.3	At5g44380	834464	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM	O.I.	C.G.	H.G.
178.0	100.0	605.8	At1g74020	843740	SS2 (STRICTOSIDINE SYNTHASE 2)	Encodes AtSS-2 strictosidine synthase.	O.I.	C.G.	H.G.
177.1	100.0	55.8	At2g02630	814792	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
171.7	100.0	321.6	At5g12940	831134	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
168.4	100.0	274.6	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
168.0	100.0	32.5	At4g26890	828796	MAPKKK16	member of MEKK subfamily	O.I.	C.G.	H.G.
164.8	100.0	145.9	At3g22740	821845	HMT3	homocysteine S-methyltransferase (HMT3)	O.I.	C.G.	H.G.
163.8	99.9	81.2	At1g51260	841549	LPAT3	ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS]	O.I.	C.G.	H.G.
163.2	99.9	161.8	At5g15870	831444	glycosyl hydrolase family 81 protein	F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:response to cyclopentenone;C:unknown;FPOMVB	O.I.	C.G.	H.G.
162.2	99.9	557.4	At3g10720	820241	pectinesterase, putative	F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
160.2	99.9	207.7	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
158.6	99.9	64.9	At3g25790	822170	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
155.4	99.9	27.7	At4g15350	827201	CYP705A2	member of CYP705A	O.I.	C.G.	H.G.
155.3	99.9	76.7	At4g14940	827152	ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)	atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.	O.I.	C.G.	H.G.
155.3	99.9	67.6	At5g49770	835040	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
154.4	99.9	174.4	At4g27400	828848	late embryogenesis abundant protein-related / LEA protein-related	F:unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.
154.1	99.9	33.5	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
152.4	99.9	170.0	At4g37160	829870	sks15 (SKU5 Similar 15)	F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
147.3	99.9	146.5	At5g23530	832418	AtCXE18 (Arabidopsis thaliana carboxyesterase 18)	F:carboxylesterase activity;P:metabolic process;C:unknown;BOFPMAV	O.I.	C.G.	H.G.
145.4	99.9	28.1	At1g50720	841494	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM	O.I.	C.G.	H.G.
134.9	99.9	174.5	At1g06080	837117	ADS1 (DELTA 9 DESATURASE 1)	homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.	O.I.	C.G.	H.G.
133.9	99.9	180.7	At2g41290	818728	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFA	O.I.	C.G.	H.G.
132.9	99.9	102.2	At3g56060	824772	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
126.9	99.9	47.1	At5g56320	835731	ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
125.2	99.9	19.3	At4g35210	829674	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
124.3	99.9	49.2	At3g27950	822419	early nodule-specific protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
124.3	99.9	42.0	At3g25950	822192	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PM	O.I.	C.G.	H.G.
123.1	99.9	219.8	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
122.4	99.9	87.9	At1g12740	837830	CYP87A2	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
120.6	99.9	72.3	At4g16230	827317	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
118.9	99.9	28.3	At1g16160	838185	WAKL5 (wall associated kinase-like 5)	WAK-like kinase	O.I.	C.G.	H.G.
118.7	99.9	50.8	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
115.6	99.9	71.6	At1g36060	840510	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
113.4	99.9	111.2	At1g54120	841852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
111.7	99.9	54.1	At1g33280	840223	ANAC015 (Arabidopsis NAC domain containing protein 15)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
110.1	99.9	161.0	At5g60520	836173	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
107.0	99.9	55.4	At5g59930	836115	DC1 domain-containing protein / UV-B light-insensitive protein, putative	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF	O.I.	C.G.	H.G.
105.9	99.9	828.9	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
102.5	99.9	34.3	At1g34490	840351	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOF	O.I.	C.G.	H.G.
100.5	99.9	39.7	At2g04500	814991	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM	O.I.	C.G.	H.G.
97.9	99.9	539.4	At5g06860	830577	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.	O.I.	C.G.	H.G.
97.7	99.9	47.1	At5g43040	834319	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO	O.I.	C.G.	H.G.
96.8	99.9	43.4	At2g40470	818641	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
93.3	99.9	35.4	At3g21680	821722	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
92.8	99.9	181.9	At5g23210	832385	SCPL34	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole, plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
87.7	99.9	30.2	At2g27010	817243	CYP705A9	member of CYP705A	O.I.	C.G.	H.G.
87.5	99.9	47.0	At4g13130	826927	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMO	O.I.	C.G.	H.G.
86.3	99.9	72.1	At1g14220	837983	ribonuclease T2 family protein	F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOV	O.I.	C.G.	H.G.
86.0	99.9	36.3	At3g07000	819885	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.

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GSM ID	GSM184483
Assay name	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184483 Assay name Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184483

Assay name Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root