CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184482

Assay name Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
640.3 100.0 1832.0 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. O.I. C.G. H.G.
504.1 100.0 721.2 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV O.I. C.G. H.G.
462.4 100.0 1073.3 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
407.5 100.0 29.5 At1g66030 842916 CYP96A14P encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
401.5 100.0 320.7 At2g23410 816873 ACPT (Arabidopsis cis-prenyltransferase) encodes cis-prenyltransferase O.I. C.G. H.G.
393.2 100.0 619.9 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
378.8 100.0 424.9 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, O.I. C.G. H.G.
332.0 100.0 1467.4 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
329.2 100.0 585.4 At2g37540 818330 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
299.4 100.0 383.2 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV O.I. C.G. H.G.
281.0 100.0 265.1 At5g24070 832472 peroxidase family protein F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
271.1 100.0 347.2 At1g26820 839225 RNS3 (RIBONUCLEASE 3) Encodes ribonuclease RNS3. O.I. C.G. H.G.
240.1 100.0 182.8 At4g15300 827196 CYP702A2 a member of the cytochrome P450 gene family. molecular function unknown. O.I. C.G. H.G.
204.3 100.0 80.3 At2g14095 815895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB O.I. C.G. H.G.
203.2 100.0 170.4 At4g25300 828633 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
184.6 100.0 78.8 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
180.6 100.0 172.3 At4g22640 828360 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
161.2 99.9 5.6 At1g32670 840161 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
161.0 99.9 12.3 At5g09700 830829 - pseudogene of glycosyl hydrolase family 3 protein O.I. C.G. H.G.
160.7 99.9 68.5 At3g20160 821560 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV O.I. C.G. H.G.
155.2 99.9 64.2 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
153.4 99.9 11.5 At3g27510 822373 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
145.0 99.9 93.7 At2g17080 816213 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV O.I. C.G. H.G.
144.8 99.9 662.7 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
134.5 99.9 34.6 At1g17310 838303 MADS-box protein (AGL100) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
133.9 99.9 29.0 At4g26890 828796 MAPKKK16 member of MEKK subfamily O.I. C.G. H.G.
128.6 99.9 415.1 At1g52050 841634 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
128.6 99.9 44.9 At4g15360 827202 CYP705A3 member of CYP705A O.I. C.G. H.G.
128.4 99.9 239.8 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
127.4 99.9 231.0 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
124.7 99.9 488.7 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
118.1 99.9 86.9 At5g15940 831451 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
117.6 99.9 178.0 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
117.1 99.9 34.9 At1g50050 841429 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO O.I. C.G. H.G.
115.4 99.9 40.8 At2g17070 816212 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
114.4 99.9 52.3 At2g37700 818347 catalytic/ iron ion binding / oxidoreductase F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV O.I. C.G. H.G.
113.1 99.9 12.9 At3g26040 822201 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
113.0 99.9 617.9 At5g05410 830424 DREB2A Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes. O.I. C.G. H.G.
109.0 99.9 99.4 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
108.7 99.9 30.7 At1g34500 840352 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOPF O.I. C.G. H.G.
107.7 99.9 43.5 At2g02630 814792 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
107.2 99.9 89.7 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
105.2 99.9 12.2 At5g54700 835559 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
100.0 99.9 44.1 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
98.9 99.9 60.6 At3g06210 819795 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
97.2 99.9 36.1 At3g21680 821722 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
97.0 99.9 45.9 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
96.4 99.9 381.6 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
94.5 99.9 95.3 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA O.I. C.G. H.G.
91.8 99.9 6.0 At1g37340 3767070 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
90.6 99.9 13.0 At1g47990 841217 ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4) Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
90.6 99.9 11.1 At3g18180 821345 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
85.2 99.9 36.7 At4g40070 830170 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
84.8 99.9 81.7 At1g50090 841432 aminotransferase class IV family protein F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
84.6 99.9 126.1 At5g58784 835994 dehydrodolichyl diphosphate synthase F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. C.G. H.G.
83.9 99.9 14.5 At5g50540 835122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
81.1 99.9 63.7 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. O.I. C.G. H.G.
77.3 99.9 33.1 At3g25950 822192 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PM O.I. C.G. H.G.
76.4 99.9 173.2 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
75.3 99.9 13.8 At1g47620 841171 CYP96A8 member of CYP96A O.I. C.G. H.G.
75.1 99.9 362.7 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
74.2 99.9 49.6 At1g29160 839790 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
73.1 99.9 466.1 At5g06860 830577 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection. O.I. C.G. H.G.
72.2 99.9 10.9 At5g02900 831752 CYP96A13 member of CYP96A O.I. C.G. H.G.
71.1 99.9 10.9 At4g31680 829296 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
70.9 99.9 18.7 At4g15350 827201 CYP705A2 member of CYP705A O.I. C.G. H.G.
69.9 99.9 15.2 At2g02620 814791 DC1 domain-containing protein / PHD finger protein-related F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM O.I. C.G. H.G.
69.3 99.9 43.1 At4g25380 828641 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
69.0 99.9 52.7 At1g51260 841549 LPAT3 ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS] O.I. C.G. H.G.
68.8 99.9 24.4 At5g45910 834631 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOM O.I. C.G. H.G.
68.0 99.9 56.4 At1g56660 842121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
67.7 99.9 12.6 At1g77790 844116 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POF O.I. C.G. H.G.
67.5 99.8 228.0 At2g39350 818520 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
67.2 99.8 26.4 At2g27010 817243 CYP705A9 member of CYP705A O.I. C.G. H.G.
67.1 99.8 412.4 At3g45010 823636 scpl48 (serine carboxypeptidase-like 48) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
65.8 99.8 11.0 At5g65130 836637 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
65.8 99.8 10.7 At1g62530 842550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
65.5 99.8 45.5 At4g10350 826627 ANAC070 (Arabidopsis NAC domain containing protein 70) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
65.1 99.8 9.9 At2g35580 818123 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF O.I. C.G. H.G.
64.7 99.8 101.9 At5g15870 831444 glycosyl hydrolase family 81 protein F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:response to cyclopentenone;C:unknown;FPOMVB O.I. C.G. H.G.
63.2 99.8 24.0 At3g46720 823825 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
63.2 99.8 11.9 At4g30870 829211 MUS81 (MMS AND UV SENSITIVE 81) Encodes an Arabidopsis homolog of the endonuclease MSU81. T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant. O.I. C.G. H.G.
62.7 99.8 20.5 At5g38100 833790 methyltransferase-related F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
62.7 99.8 11.5 At3g57840 824953 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
62.5 99.8 200.6 At4g30470 829170 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMA O.I. C.G. H.G.
61.8 99.8 444.7 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
61.7 99.8 8.8 At1g42393 2745797 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
60.7 99.8 29.3 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
60.6 99.8 36.8 At2g30340 817584 LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA O.I. C.G. H.G.
60.2 99.8 34.2 At3g27950 822419 early nodule-specific protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
59.9 99.8 189.9 At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
59.2 99.8 314.4 At2g36950 818269 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV O.I. C.G. H.G.
59.1 99.8 12.5 At5g35920 833581 CYP79A4P a cytochrome P450 pseudogene O.I. C.G. H.G.
58.6 99.8 43.9 At1g53700 841807 WAG1 (WAG 1) The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. O.I. C.G. H.G.
58.0 99.8 110.3 At5g01740 831686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
57.5 99.8 9.9 At1g52020 3767439 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
57.2 99.8 9.5 At3g59130 825082 - F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;POM O.I. C.G. H.G.
57.0 99.8 14.3 At5g20310 832153 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
56.8 99.8 139.5 At4g30850 829209 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors O.I. C.G. H.G.
56.0 99.8 8.3 At5g45240 834560 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
640.3	100.0	1832.0	At1g47600	841169	BGLU34 (BETA GLUCOSIDASE 34)	Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.	O.I.	C.G.	H.G.
504.1	100.0	721.2	At1g06090	837118	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV	O.I.	C.G.	H.G.
462.4	100.0	1073.3	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
407.5	100.0	29.5	At1g66030	842916	CYP96A14P	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
401.5	100.0	320.7	At2g23410	816873	ACPT (Arabidopsis cis-prenyltransferase)	encodes cis-prenyltransferase	O.I.	C.G.	H.G.
393.2	100.0	619.9	At2g47550	819368	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
378.8	100.0	424.9	At3g16440	820892	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	O.I.	C.G.	H.G.
332.0	100.0	1467.4	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
329.2	100.0	585.4	At2g37540	818330	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
299.4	100.0	383.2	At3g06460	819823	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV	O.I.	C.G.	H.G.
281.0	100.0	265.1	At5g24070	832472	peroxidase family protein	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
271.1	100.0	347.2	At1g26820	839225	RNS3 (RIBONUCLEASE 3)	Encodes ribonuclease RNS3.	O.I.	C.G.	H.G.
240.1	100.0	182.8	At4g15300	827196	CYP702A2	a member of the cytochrome P450 gene family. molecular function unknown.	O.I.	C.G.	H.G.
204.3	100.0	80.3	At2g14095	815895	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB	O.I.	C.G.	H.G.
203.2	100.0	170.4	At4g25300	828633	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
184.6	100.0	78.8	At5g16230	831483	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
180.6	100.0	172.3	At4g22640	828360	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
161.2	99.9	5.6	At1g32670	840161	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
161.0	99.9	12.3	At5g09700	830829	-	pseudogene of glycosyl hydrolase family 3 protein	O.I.	C.G.	H.G.
160.7	99.9	68.5	At3g20160	821560	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV	O.I.	C.G.	H.G.
155.2	99.9	64.2	At3g25790	822170	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
153.4	99.9	11.5	At3g27510	822373	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
145.0	99.9	93.7	At2g17080	816213	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV	O.I.	C.G.	H.G.
144.8	99.9	662.7	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
134.5	99.9	34.6	At1g17310	838303	MADS-box protein (AGL100)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
133.9	99.9	29.0	At4g26890	828796	MAPKKK16	member of MEKK subfamily	O.I.	C.G.	H.G.
128.6	99.9	415.1	At1g52050	841634	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
128.6	99.9	44.9	At4g15360	827202	CYP705A3	member of CYP705A	O.I.	C.G.	H.G.
128.4	99.9	239.8	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
127.4	99.9	231.0	At3g49190	824080	condensation domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
124.7	99.9	488.7	At3g10720	820241	pectinesterase, putative	F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
118.1	99.9	86.9	At5g15940	831451	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
117.6	99.9	178.0	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
117.1	99.9	34.9	At1g50050	841429	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO	O.I.	C.G.	H.G.
115.4	99.9	40.8	At2g17070	816212	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
114.4	99.9	52.3	At2g37700	818347	catalytic/ iron ion binding / oxidoreductase	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV	O.I.	C.G.	H.G.
113.1	99.9	12.9	At3g26040	822201	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
113.0	99.9	617.9	At5g05410	830424	DREB2A	Encodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress�inducible genes.	O.I.	C.G.	H.G.
109.0	99.9	99.4	At2g32620	817822	ATCSLB02	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
108.7	99.9	30.7	At1g34500	840352	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOPF	O.I.	C.G.	H.G.
107.7	99.9	43.5	At2g02630	814792	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
107.2	99.9	89.7	At2g32610	817821	ATCSLB01	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
105.2	99.9	12.2	At5g54700	835559	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
100.0	99.9	44.1	At2g40470	818641	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
98.9	99.9	60.6	At3g06210	819795	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
97.2	99.9	36.1	At3g21680	821722	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
97.0	99.9	45.9	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
96.4	99.9	381.6	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
94.5	99.9	95.3	At3g47400	823894	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA	O.I.	C.G.	H.G.
91.8	99.9	6.0	At1g37340	3767070	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
90.6	99.9	13.0	At1g47990	841217	ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4)	Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
90.6	99.9	11.1	At3g18180	821345	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
85.2	99.9	36.7	At4g40070	830170	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
84.8	99.9	81.7	At1g50090	841432	aminotransferase class IV family protein	F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
84.6	99.9	126.1	At5g58784	835994	dehydrodolichyl diphosphate synthase	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	C.G.	H.G.
83.9	99.9	14.5	At5g50540	835122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
81.1	99.9	63.7	At4g15370	827203	BARS1 (BARUOL SYNTHASE 1)	Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.	O.I.	C.G.	H.G.
77.3	99.9	33.1	At3g25950	822192	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PM	O.I.	C.G.	H.G.
76.4	99.9	173.2	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
75.3	99.9	13.8	At1g47620	841171	CYP96A8	member of CYP96A	O.I.	C.G.	H.G.
75.1	99.9	362.7	At1g52070	841636	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
74.2	99.9	49.6	At1g29160	839790	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
73.1	99.9	466.1	At5g06860	830577	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.	O.I.	C.G.	H.G.
72.2	99.9	10.9	At5g02900	831752	CYP96A13	member of CYP96A	O.I.	C.G.	H.G.
71.1	99.9	10.9	At4g31680	829296	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
70.9	99.9	18.7	At4g15350	827201	CYP705A2	member of CYP705A	O.I.	C.G.	H.G.
69.9	99.9	15.2	At2g02620	814791	DC1 domain-containing protein / PHD finger protein-related	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM	O.I.	C.G.	H.G.
69.3	99.9	43.1	At4g25380	828641	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
69.0	99.9	52.7	At1g51260	841549	LPAT3	ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS]	O.I.	C.G.	H.G.
68.8	99.9	24.4	At5g45910	834631	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOM	O.I.	C.G.	H.G.
68.0	99.9	56.4	At1g56660	842121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
67.7	99.9	12.6	At1g77790	844116	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POF	O.I.	C.G.	H.G.
67.5	99.8	228.0	At2g39350	818520	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
67.2	99.8	26.4	At2g27010	817243	CYP705A9	member of CYP705A	O.I.	C.G.	H.G.
67.1	99.8	412.4	At3g45010	823636	scpl48 (serine carboxypeptidase-like 48)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
65.8	99.8	11.0	At5g65130	836637	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
65.8	99.8	10.7	At1g62530	842550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.5	99.8	45.5	At4g10350	826627	ANAC070 (Arabidopsis NAC domain containing protein 70)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.1	99.8	9.9	At2g35580	818123	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF	O.I.	C.G.	H.G.
64.7	99.8	101.9	At5g15870	831444	glycosyl hydrolase family 81 protein	F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:response to cyclopentenone;C:unknown;FPOMVB	O.I.	C.G.	H.G.
63.2	99.8	24.0	At3g46720	823825	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
63.2	99.8	11.9	At4g30870	829211	MUS81 (MMS AND UV SENSITIVE 81)	Encodes an Arabidopsis homolog of the endonuclease MSU81. T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant.	O.I.	C.G.	H.G.
62.7	99.8	20.5	At5g38100	833790	methyltransferase-related	F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
62.7	99.8	11.5	At3g57840	824953	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
62.5	99.8	200.6	At4g30470	829170	cinnamoyl-CoA reductase-related	F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMA	O.I.	C.G.	H.G.
61.8	99.8	444.7	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
61.7	99.8	8.8	At1g42393	2745797	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
60.7	99.8	29.3	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
60.6	99.8	36.8	At2g30340	817584	LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBA	O.I.	C.G.	H.G.
60.2	99.8	34.2	At3g27950	822419	early nodule-specific protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
59.9	99.8	189.9	At5g12940	831134	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
59.2	99.8	314.4	At2g36950	818269	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV	O.I.	C.G.	H.G.
59.1	99.8	12.5	At5g35920	833581	CYP79A4P	a cytochrome P450 pseudogene	O.I.	C.G.	H.G.
58.6	99.8	43.9	At1g53700	841807	WAG1 (WAG 1)	The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	O.I.	C.G.	H.G.
58.0	99.8	110.3	At5g01740	831686	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
57.5	99.8	9.9	At1g52020	3767439	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
57.2	99.8	9.5	At3g59130	825082	-	F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
57.0	99.8	14.3	At5g20310	832153	-	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
56.8	99.8	139.5	At4g30850	829209	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors	O.I.	C.G.	H.G.
56.0	99.8	8.3	At5g45240	834560	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.

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GSM ID	GSM184482
Assay name	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184482 Assay name Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184482

Assay name Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root