CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184481

Assay name Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
800.2 100.0 118.6 At2g02630 814792 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
774.0 100.0 332.6 At4g25300 828633 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
650.3 100.0 144.1 At4g14980 827157 - F:unknown;P:intracellular signaling cascade;C:unknown;POMF O.I. C.G. H.G.
624.6 100.0 101.2 At1g61840 842481 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
585.6 100.0 285.4 At4g15300 827196 CYP702A2 a member of the cytochrome P450 gene family. molecular function unknown. O.I. C.G. H.G.
469.9 100.0 1082.0 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
458.7 100.0 669.5 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
405.2 100.0 178.7 At1g50090 841432 aminotransferase class IV family protein F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
388.0 100.0 193.1 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA O.I. C.G. H.G.
349.4 100.0 295.6 At5g24070 832472 peroxidase family protein F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
342.3 100.0 1339.4 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. O.I. C.G. H.G.
331.4 100.0 128.8 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. O.I. C.G. H.G.
308.5 100.0 90.5 At3g25790 822170 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
289.3 100.0 546.4 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV O.I. C.G. H.G.
272.6 100.0 65.4 At4g15360 827202 CYP705A3 member of CYP705A O.I. C.G. H.G.
246.9 100.0 20.8 At3g28390 822468 PGP18 (P-GLYCOPROTEIN 18) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
238.2 100.0 38.0 At3g50180 824180 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MPOFBVA O.I. C.G. H.G.
229.2 100.0 114.2 At5g04970 830379 pectinesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA O.I. C.G. H.G.
222.6 100.0 116.1 At2g17080 816213 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV O.I. C.G. H.G.
220.2 100.0 56.4 At2g17070 816212 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
219.7 100.0 237.2 At2g23410 816873 ACPT (Arabidopsis cis-prenyltransferase) encodes cis-prenyltransferase O.I. C.G. H.G.
214.8 100.0 55.2 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
213.9 100.0 82.2 At4g10350 826627 ANAC070 (Arabidopsis NAC domain containing protein 70) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
211.8 100.0 322.3 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV O.I. C.G. H.G.
209.2 100.0 32.9 At1g55430 841990 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
208.7 100.0 528.8 At1g52050 841634 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
198.8 100.0 90.6 At1g02430 839242 ATARFD1B (ADP-ribosylation factor D1B) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. O.I. C.G. H.G.
198.6 100.0 74.1 At3g05390 819703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABO O.I. C.G. H.G.
189.9 100.0 1109.8 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
179.7 100.0 61.6 At1g79580 844296 SMB (SOMBRERO) NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions. O.I. C.G. H.G.
179.6 100.0 209.2 At2g41290 818728 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFA O.I. C.G. H.G.
162.5 99.9 174.8 At5g58784 835994 dehydrodolichyl diphosphate synthase F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. C.G. H.G.
159.2 99.9 20.1 At1g47620 841171 CYP96A8 member of CYP96A O.I. C.G. H.G.
157.3 99.9 99.7 At1g12740 837830 CYP87A2 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
153.6 99.9 344.0 At2g39350 818520 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
153.2 99.9 34.6 At3g45530 823694 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
149.4 99.9 27.1 At4g15350 827201 CYP705A2 member of CYP705A O.I. C.G. H.G.
149.3 99.9 59.7 At2g37700 818347 catalytic/ iron ion binding / oxidoreductase F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV O.I. C.G. H.G.
145.4 99.9 96.4 At5g15940 831451 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
143.1 99.9 658.8 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
140.9 99.9 65.3 At1g44050 841006 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
140.6 99.9 44.0 At5g51310 835205 gibberellin 20-oxidase-related F:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFM O.I. C.G. H.G.
135.9 99.9 254.6 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, O.I. C.G. H.G.
129.6 99.9 1472.5 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
127.4 99.9 231.0 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
126.7 99.9 107.2 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
125.6 99.9 52.8 At5g60770 836198 ATNRT2.4 member of High affinity nitrate transporter family O.I. C.G. H.G.
125.3 99.9 127.7 At2g43600 818962 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
122.3 99.9 52.7 At5g43040 834319 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO O.I. C.G. H.G.
119.1 99.9 495.5 At1g74020 843740 SS2 (STRICTOSIDINE SYNTHASE 2) Encodes AtSS-2 strictosidine synthase. O.I. C.G. H.G.
118.9 99.9 63.2 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
117.7 99.9 35.0 At2g27010 817243 CYP705A9 member of CYP705A O.I. C.G. H.G.
116.8 99.9 420.1 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
115.7 99.9 54.0 At4g13130 826927 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMO O.I. C.G. H.G.
114.9 99.9 176.9 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
112.3 99.9 69.8 At4g16230 827317 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
112.2 99.9 91.8 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
112.2 99.9 19.4 At5g54050 835488 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF O.I. C.G. H.G.
112.0 99.9 463.2 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
110.7 99.9 339.4 At2g37540 818330 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
108.9 99.9 40.9 At3g07000 819885 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
107.0 99.9 123.2 At2g23630 816895 sks16 (SKU5 Similar 16) F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
106.9 99.9 20.7 At1g61390 842433 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA O.I. C.G. H.G.
105.0 99.9 141.9 At1g36770 3767031 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
103.7 99.9 249.8 At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
102.1 99.9 44.6 At3g27950 822419 early nodule-specific protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
100.4 99.9 546.0 At5g06860 830577 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection. O.I. C.G. H.G.
98.9 99.9 108.1 At1g51830 841610 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
98.3 99.9 33.5 At1g28010 839694 PGP14 (P-GLYCOPROTEIN 14) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV O.I. C.G. H.G.
97.9 99.9 97.9 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
96.9 99.9 33.9 At1g55390 841986 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
95.6 99.9 166.1 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF O.I. C.G. H.G.
95.5 99.9 22.5 At5g59070 836024 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;BOAPMF O.I. C.G. H.G.
90.4 99.9 31.2 At1g66450 842963 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
89.8 99.9 58.4 At4g14940 827152 ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1) atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development. O.I. C.G. H.G.
89.5 99.9 199.5 At1g26820 839225 RNS3 (RIBONUCLEASE 3) Encodes ribonuclease RNS3. O.I. C.G. H.G.
89.3 99.9 143.5 At5g20400 832162 oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. O.I. C.G. H.G.
89.2 99.9 395.2 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
88.7 99.9 43.1 At2g39180 818503 CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2) F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVA O.I. C.G. H.G.
87.9 99.9 31.0 At1g10400 837580 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF O.I. C.G. H.G.
86.2 99.9 56.6 At3g06210 819795 binding F:binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
86.2 99.9 43.3 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
85.4 99.9 46.0 At3g11370 820309 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
82.5 99.9 65.4 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family O.I. C.G. H.G.
81.0 99.9 48.2 At5g59930 836115 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF O.I. C.G. H.G.
77.9 99.9 148.0 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
76.1 99.9 38.9 At4g01750 827905 RGXT2 (rhamnogalacturonan xylosyltransferase 2) Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT2 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II. O.I. C.G. H.G.
75.4 99.9 44.4 At1g33280 840223 ANAC015 (Arabidopsis NAC domain containing protein 15) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
74.8 99.9 351.9 At1g77330 844069 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) O.I. C.G. H.G.
73.7 99.9 23.2 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
71.2 99.9 33.4 At2g04500 814991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM O.I. C.G. H.G.
70.8 99.9 21.9 At1g16160 838185 WAKL5 (wall associated kinase-like 5) WAK-like kinase O.I. C.G. H.G.
67.0 99.8 146.5 At5g27920 832858 F-box family protein F:ubiquitin-protein ligase activity;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
66.5 99.8 34.1 At5g56320 835731 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
63.4 99.8 18.2 At1g55700 842019 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO O.I. C.G. H.G.
62.9 99.8 38.8 At2g34080 817969 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
62.0 99.8 156.0 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
61.0 99.8 96.3 At1g51420 841567 SPP1 (SUCROSE-PHOSPHATASE 1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO O.I. C.G. H.G.
59.5 99.8 169.5 At3g23190 821897 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P O.I. C.G. H.G.
59.4 99.8 30.6 At4g40070 830170 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
800.2	100.0	118.6	At2g02630	814792	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
774.0	100.0	332.6	At4g25300	828633	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
650.3	100.0	144.1	At4g14980	827157	-	F:unknown;P:intracellular signaling cascade;C:unknown;POMF	O.I.	C.G.	H.G.
624.6	100.0	101.2	At1g61840	842481	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
585.6	100.0	285.4	At4g15300	827196	CYP702A2	a member of the cytochrome P450 gene family. molecular function unknown.	O.I.	C.G.	H.G.
469.9	100.0	1082.0	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
458.7	100.0	669.5	At2g47550	819368	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
405.2	100.0	178.7	At1g50090	841432	aminotransferase class IV family protein	F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
388.0	100.0	193.1	At3g47400	823894	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA	O.I.	C.G.	H.G.
349.4	100.0	295.6	At5g24070	832472	peroxidase family protein	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
342.3	100.0	1339.4	At1g47600	841169	BGLU34 (BETA GLUCOSIDASE 34)	Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.	O.I.	C.G.	H.G.
331.4	100.0	128.8	At4g15370	827203	BARS1 (BARUOL SYNTHASE 1)	Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.	O.I.	C.G.	H.G.
308.5	100.0	90.5	At3g25790	822170	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
289.3	100.0	546.4	At1g06090	837118	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV	O.I.	C.G.	H.G.
272.6	100.0	65.4	At4g15360	827202	CYP705A3	member of CYP705A	O.I.	C.G.	H.G.
246.9	100.0	20.8	At3g28390	822468	PGP18 (P-GLYCOPROTEIN 18)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
238.2	100.0	38.0	At3g50180	824180	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;MPOFBVA	O.I.	C.G.	H.G.
229.2	100.0	114.2	At5g04970	830379	pectinesterase, putative	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA	O.I.	C.G.	H.G.
222.6	100.0	116.1	At2g17080	816213	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV	O.I.	C.G.	H.G.
220.2	100.0	56.4	At2g17070	816212	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
219.7	100.0	237.2	At2g23410	816873	ACPT (Arabidopsis cis-prenyltransferase)	encodes cis-prenyltransferase	O.I.	C.G.	H.G.
214.8	100.0	55.2	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
213.9	100.0	82.2	At4g10350	826627	ANAC070 (Arabidopsis NAC domain containing protein 70)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
211.8	100.0	322.3	At3g06460	819823	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV	O.I.	C.G.	H.G.
209.2	100.0	32.9	At1g55430	841990	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
208.7	100.0	528.8	At1g52050	841634	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
198.8	100.0	90.6	At1g02430	839242	ATARFD1B (ADP-ribosylation factor D1B)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
198.6	100.0	74.1	At3g05390	819703	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABO	O.I.	C.G.	H.G.
189.9	100.0	1109.8	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
179.7	100.0	61.6	At1g79580	844296	SMB (SOMBRERO)	NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.	O.I.	C.G.	H.G.
179.6	100.0	209.2	At2g41290	818728	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOFA	O.I.	C.G.	H.G.
162.5	99.9	174.8	At5g58784	835994	dehydrodolichyl diphosphate synthase	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	C.G.	H.G.
159.2	99.9	20.1	At1g47620	841171	CYP96A8	member of CYP96A	O.I.	C.G.	H.G.
157.3	99.9	99.7	At1g12740	837830	CYP87A2	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
153.6	99.9	344.0	At2g39350	818520	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
153.2	99.9	34.6	At3g45530	823694	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
149.4	99.9	27.1	At4g15350	827201	CYP705A2	member of CYP705A	O.I.	C.G.	H.G.
149.3	99.9	59.7	At2g37700	818347	catalytic/ iron ion binding / oxidoreductase	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV	O.I.	C.G.	H.G.
145.4	99.9	96.4	At5g15940	831451	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
143.1	99.9	658.8	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
140.9	99.9	65.3	At1g44050	841006	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
140.6	99.9	44.0	At5g51310	835205	gibberellin 20-oxidase-related	F:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFM	O.I.	C.G.	H.G.
135.9	99.9	254.6	At3g16440	820892	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	O.I.	C.G.	H.G.
129.6	99.9	1472.5	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
127.4	99.9	231.0	At3g49190	824080	condensation domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
126.7	99.9	107.2	At2g32620	817822	ATCSLB02	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
125.6	99.9	52.8	At5g60770	836198	ATNRT2.4	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
125.3	99.9	127.7	At2g43600	818962	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
122.3	99.9	52.7	At5g43040	834319	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO	O.I.	C.G.	H.G.
119.1	99.9	495.5	At1g74020	843740	SS2 (STRICTOSIDINE SYNTHASE 2)	Encodes AtSS-2 strictosidine synthase.	O.I.	C.G.	H.G.
118.9	99.9	63.2	At5g16230	831483	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
117.7	99.9	35.0	At2g27010	817243	CYP705A9	member of CYP705A	O.I.	C.G.	H.G.
116.8	99.9	420.1	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
115.7	99.9	54.0	At4g13130	826927	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMO	O.I.	C.G.	H.G.
114.9	99.9	176.9	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
112.3	99.9	69.8	At4g16230	827317	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
112.2	99.9	91.8	At2g32610	817821	ATCSLB01	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
112.2	99.9	19.4	At5g54050	835488	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
112.0	99.9	463.2	At3g10720	820241	pectinesterase, putative	F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
110.7	99.9	339.4	At2g37540	818330	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
108.9	99.9	40.9	At3g07000	819885	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
107.0	99.9	123.2	At2g23630	816895	sks16 (SKU5 Similar 16)	F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
106.9	99.9	20.7	At1g61390	842433	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
105.0	99.9	141.9	At1g36770	3767031	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
103.7	99.9	249.8	At5g12940	831134	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
102.1	99.9	44.6	At3g27950	822419	early nodule-specific protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
100.4	99.9	546.0	At5g06860	830577	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.	O.I.	C.G.	H.G.
98.9	99.9	108.1	At1g51830	841610	ATP binding / kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
98.3	99.9	33.5	At1g28010	839694	PGP14 (P-GLYCOPROTEIN 14)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPV	O.I.	C.G.	H.G.
97.9	99.9	97.9	At3g12230	820403	scpl14 (serine carboxypeptidase-like 14)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
96.9	99.9	33.9	At1g55390	841986	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
95.6	99.9	166.1	At1g29020	839776	calcium-binding EF hand family protein	F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF	O.I.	C.G.	H.G.
95.5	99.9	22.5	At5g59070	836024	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;BOAPMF	O.I.	C.G.	H.G.
90.4	99.9	31.2	At1g66450	842963	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
89.8	99.9	58.4	At4g14940	827152	ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)	atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.	O.I.	C.G.	H.G.
89.5	99.9	199.5	At1g26820	839225	RNS3 (RIBONUCLEASE 3)	Encodes ribonuclease RNS3.	O.I.	C.G.	H.G.
89.3	99.9	143.5	At5g20400	832162	oxidoreductase, 2OG-Fe(II) oxygenase family protein	encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.	O.I.	C.G.	H.G.
89.2	99.9	395.2	At1g52070	841636	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
88.7	99.9	43.1	At2g39180	818503	CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2)	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVA	O.I.	C.G.	H.G.
87.9	99.9	31.0	At1g10400	837580	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
86.2	99.9	56.6	At3g06210	819795	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
86.2	99.9	43.3	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
85.4	99.9	46.0	At3g11370	820309	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
82.5	99.9	65.4	At1g14080	837968	FUT6 (FUCOSYLTRANSFERASE 6)	member of Xyloglucan fucosyltransferase family	O.I.	C.G.	H.G.
81.0	99.9	48.2	At5g59930	836115	DC1 domain-containing protein / UV-B light-insensitive protein, putative	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF	O.I.	C.G.	H.G.
77.9	99.9	148.0	At5g22570	832320	WRKY38	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
76.1	99.9	38.9	At4g01750	827905	RGXT2 (rhamnogalacturonan xylosyltransferase 2)	Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT2 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.	O.I.	C.G.	H.G.
75.4	99.9	44.4	At1g33280	840223	ANAC015 (Arabidopsis NAC domain containing protein 15)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
74.8	99.9	351.9	At1g77330	844069	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)	O.I.	C.G.	H.G.
73.7	99.9	23.2	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
71.2	99.9	33.4	At2g04500	814991	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM	O.I.	C.G.	H.G.
70.8	99.9	21.9	At1g16160	838185	WAKL5 (wall associated kinase-like 5)	WAK-like kinase	O.I.	C.G.	H.G.
67.0	99.8	146.5	At5g27920	832858	F-box family protein	F:ubiquitin-protein ligase activity;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
66.5	99.8	34.1	At5g56320	835731	ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
63.4	99.8	18.2	At1g55700	842019	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO	O.I.	C.G.	H.G.
62.9	99.8	38.8	At2g34080	817969	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
62.0	99.8	156.0	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
61.0	99.8	96.3	At1g51420	841567	SPP1 (SUCROSE-PHOSPHATASE 1)	F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO	O.I.	C.G.	H.G.
59.5	99.8	169.5	At3g23190	821897	lesion inducing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P	O.I.	C.G.	H.G.
59.4	99.8	30.6	At4g40070	830170	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM184481
Assay name	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184481 Assay name Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184481

Assay name Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root