CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM184476

Assay name Lateral Root Cap root cells 2hr KCl control treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
653.2 100.0 1850.3 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. O.I. C.G. H.G.
329.2 100.0 101.9 At2g14095 815895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB O.I. C.G. H.G.
223.4 100.0 4251.1 At4g05320 825880 UBQ10 (POLYUBIQUITIN 10) One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. O.I. C.G. H.G.
222.9 100.0 745.3 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
220.2 100.0 72.5 At2g37700 818347 catalytic/ iron ion binding / oxidoreductase F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV O.I. C.G. H.G.
200.2 100.0 226.5 At2g23410 816873 ACPT (Arabidopsis cis-prenyltransferase) encodes cis-prenyltransferase O.I. C.G. H.G.
183.2 100.0 5.9 At3g29732 3769027 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
159.7 99.9 11.4 At2g24780 817015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
152.2 99.9 6.4 At2g30925 817643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
144.9 99.9 254.7 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
139.2 99.9 16.2 At4g22370 828332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
123.4 99.9 10.8 At2g04380 814977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
122.7 99.9 11.2 At2g02640 814793 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
114.1 99.9 7.5 At5g26870 832745 AGL26 Root Specific O.I. C.G. H.G.
114.1 99.9 6.3 At1g64020 842705 serpin-related / serine protease inhibitor-related F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
111.1 99.9 40.0 At2g17070 816212 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
108.4 99.9 16.6 At1g47620 841171 CYP96A8 member of CYP96A O.I. C.G. H.G.
105.7 99.9 4.2 At4g03990 825711 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
105.6 99.9 72.7 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. O.I. C.G. H.G.
102.9 99.9 30.2 At1g17310 838303 MADS-box protein (AGL100) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
101.7 99.9 8.9 At1g23630 - - O.I. C.G. H.G.
100.4 99.9 5.3 At2g14300 3768068 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
98.1 99.9 156.6 At5g24070 832472 peroxidase family protein F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
97.6 99.9 9.7 At5g39480 833944 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
97.2 99.9 9.4 At1g41900 840803 transposable element gene pseudogene of myosin heavy chain-related O.I. C.G. H.G.
93.2 99.9 16.1 At5g51270 835201 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA O.I. C.G. H.G.
90.5 99.9 113.7 At4g25300 828633 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
89.5 99.9 13.8 At2g25780 817120 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
84.3 99.9 187.8 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
81.3 99.9 2.9 At4g03810 3770158 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
80.4 99.9 9.1 At1g47300 841133 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
80.1 99.9 287.5 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV O.I. C.G. H.G.
77.6 99.9 34.9 At4g15360 827202 CYP705A3 member of CYP705A O.I. C.G. H.G.
76.5 99.9 16.4 At2g03460 814875 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBO O.I. C.G. H.G.
76.0 99.9 13.7 At1g62090 3767607 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
72.9 99.9 18.4 At1g20970 838691 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAV O.I. C.G. H.G.
72.4 99.9 19.2 At4g21370 827889 S-locus protein kinase, putative The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1. O.I. C.G. H.G.
72.1 99.9 8.7 At3g51210 824284 flavonol 3-sulfotransferase-related F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
69.1 99.9 14.9 At5g44900 834520 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, N-terminal protein myristoylation, defense response, innate immune response;C:intrinsic to membrane;PO O.I. C.G. H.G.
65.7 99.8 34.6 At5g03210 831903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
65.5 99.8 9.7 At5g54700 835559 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
65.1 99.8 10.9 At5g30420 3770955 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
65.0 99.8 33.7 At5g56320 835731 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
64.8 99.8 7.3 At2g18830 816398 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
64.1 99.8 250.2 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
63.8 99.8 10.8 At1g67000 843018 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
63.8 99.8 6.1 At3g30190 822712 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
63.7 99.8 54.6 At1g56660 842121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
63.3 99.8 167.8 At1g26820 839225 RNS3 (RIBONUCLEASE 3) Encodes ribonuclease RNS3. O.I. C.G. H.G.
61.8 99.8 10.1 At2g25500 817088 - F:molecular_function unknown;P:biological_process unknown;C:cytoplasm;BOPF O.I. C.G. H.G.
61.5 99.8 92.5 At4g15300 827196 CYP702A2 a member of the cytochrome P450 gene family. molecular function unknown. O.I. C.G. H.G.
61.5 99.8 7.7 At2g12170 815687 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
61.4 99.8 11.5 At1g66030 842916 CYP96A14P encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
61.4 99.8 10.7 At1g47990 841217 ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4) Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
60.4 99.8 250.7 At2g37540 818330 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
60.1 99.8 13.3 At4g03740 825675 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
59.2 99.8 423.7 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
58.8 99.8 9.5 At4g32220 3770572 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
57.9 99.8 9.6 At1g75360 843872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB O.I. C.G. H.G.
57.9 99.8 8.5 At5g45240 834560 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
57.4 99.8 15.5 At1g48640 841286 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
54.5 99.8 4.9 At2g04330 814972 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
52.2 99.8 316.1 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
52.2 99.8 9.3 At5g37110 833682 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
52.1 99.8 3.2 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
51.4 99.8 9.3 At1g72600 843592 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFOBAV O.I. C.G. H.G.
51.2 99.8 10.3 At1g63600 842665 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF O.I. C.G. H.G.
50.5 99.8 4.7 At2g09960 3768104 transposable element gene pseudogene of unknown protein O.I. C.G. H.G.
48.8 99.8 16.6 At1g42980 840896 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
48.1 99.8 378.1 At5g06860 830577 PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1) Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection. O.I. C.G. H.G.
47.9 99.8 9.0 At2g47660 819379 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
46.8 99.8 9.1 At2g03630 814892 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
46.5 99.8 4.7 At2g10490 3768467 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
46.1 99.8 6.9 At1g05577 837062 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
45.8 99.8 6.5 At2g06890 3768157 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
45.4 99.8 9.1 At4g13190 826933 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
45.4 99.8 7.8 At5g32610 833243 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
45.1 99.8 11.8 At4g30230 829146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
45.0 99.8 146.4 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, O.I. C.G. H.G.
45.0 99.8 11.9 At4g00232 826492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
44.8 99.8 7.7 At1g66490 842967 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
44.1 99.8 7.6 At2g42050 818805 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
43.5 99.8 8.2 At5g17720 831639 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFVA O.I. C.G. H.G.
42.6 99.8 57.9 At1g50090 841432 aminotransferase class IV family protein F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
42.4 99.8 8.2 At5g43480 834368 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.3 99.8 7.6 At2g07430 3767928 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
42.1 99.8 11.9 At3g20090 821552 CYP705A18 member of CYP705A O.I. C.G. H.G.
41.9 99.8 37.5 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
41.7 99.8 10.9 At3g46400 823790 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
41.7 99.8 6.0 At1g09360 837458 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.7 99.8 6.0 At3g27510 822373 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.5 99.8 18.0 At2g40260 818618 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
41.5 99.8 7.4 At4g19480 827689 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.5 99.8 5.4 At4g36370 829789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.4 99.8 9.9 At3g10240 820186 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.3 99.8 8.9 At3g42080 823177 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
40.8 99.8 514.3 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
40.1 99.8 9.5 At3g42460 823249 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
39.2 99.8 59.6 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
39.1 99.8 10.5 At1g06020 837111 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
653.2	100.0	1850.3	At1g47600	841169	BGLU34 (BETA GLUCOSIDASE 34)	Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.	O.I.	C.G.	H.G.
329.2	100.0	101.9	At2g14095	815895	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB	O.I.	C.G.	H.G.
223.4	100.0	4251.1	At4g05320	825880	UBQ10 (POLYUBIQUITIN 10)	One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.	O.I.	C.G.	H.G.
222.9	100.0	745.3	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
220.2	100.0	72.5	At2g37700	818347	catalytic/ iron ion binding / oxidoreductase	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV	O.I.	C.G.	H.G.
200.2	100.0	226.5	At2g23410	816873	ACPT (Arabidopsis cis-prenyltransferase)	encodes cis-prenyltransferase	O.I.	C.G.	H.G.
183.2	100.0	5.9	At3g29732	3769027	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
159.7	99.9	11.4	At2g24780	817015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
152.2	99.9	6.4	At2g30925	817643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
144.9	99.9	254.7	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
139.2	99.9	16.2	At4g22370	828332	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
123.4	99.9	10.8	At2g04380	814977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
122.7	99.9	11.2	At2g02640	814793	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
114.1	99.9	7.5	At5g26870	832745	AGL26	Root Specific	O.I.	C.G.	H.G.
114.1	99.9	6.3	At1g64020	842705	serpin-related / serine protease inhibitor-related	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
111.1	99.9	40.0	At2g17070	816212	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
108.4	99.9	16.6	At1g47620	841171	CYP96A8	member of CYP96A	O.I.	C.G.	H.G.
105.7	99.9	4.2	At4g03990	825711	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
105.6	99.9	72.7	At4g15370	827203	BARS1 (BARUOL SYNTHASE 1)	Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.	O.I.	C.G.	H.G.
102.9	99.9	30.2	At1g17310	838303	MADS-box protein (AGL100)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
101.7	99.9	8.9	At1g23630		-	-	O.I.	C.G.	H.G.
100.4	99.9	5.3	At2g14300	3768068	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
98.1	99.9	156.6	At5g24070	832472	peroxidase family protein	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
97.6	99.9	9.7	At5g39480	833944	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
97.2	99.9	9.4	At1g41900	840803	transposable element gene	pseudogene of myosin heavy chain-related	O.I.	C.G.	H.G.
93.2	99.9	16.1	At5g51270	835201	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA	O.I.	C.G.	H.G.
90.5	99.9	113.7	At4g25300	828633	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
89.5	99.9	13.8	At2g25780	817120	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
84.3	99.9	187.8	At3g49190	824080	condensation domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
81.3	99.9	2.9	At4g03810	3770158	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
80.4	99.9	9.1	At1g47300	841133	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
80.1	99.9	287.5	At1g06090	837118	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV	O.I.	C.G.	H.G.
77.6	99.9	34.9	At4g15360	827202	CYP705A3	member of CYP705A	O.I.	C.G.	H.G.
76.5	99.9	16.4	At2g03460	814875	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBO	O.I.	C.G.	H.G.
76.0	99.9	13.7	At1g62090	3767607	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
72.9	99.9	18.4	At1g20970	838691	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAV	O.I.	C.G.	H.G.
72.4	99.9	19.2	At4g21370	827889	S-locus protein kinase, putative	The Col-0 pseudoSRKA allele contains a frameshift mutation that introduces a premature stop codon within the fourth of seven exons found in SRK genes. Its SCR sequences consist of several truncated pseudoSCR sequences, the longest of which is designated pseudoSCR1.	O.I.	C.G.	H.G.
72.1	99.9	8.7	At3g51210	824284	flavonol 3-sulfotransferase-related	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
69.1	99.9	14.9	At5g44900	834520	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, N-terminal protein myristoylation, defense response, innate immune response;C:intrinsic to membrane;PO	O.I.	C.G.	H.G.
65.7	99.8	34.6	At5g03210	831903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
65.5	99.8	9.7	At5g54700	835559	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
65.1	99.8	10.9	At5g30420	3770955	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
65.0	99.8	33.7	At5g56320	835731	ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
64.8	99.8	7.3	At2g18830	816398	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
64.1	99.8	250.2	At2g47550	819368	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
63.8	99.8	10.8	At1g67000	843018	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
63.8	99.8	6.1	At3g30190	822712	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
63.7	99.8	54.6	At1g56660	842121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
63.3	99.8	167.8	At1g26820	839225	RNS3 (RIBONUCLEASE 3)	Encodes ribonuclease RNS3.	O.I.	C.G.	H.G.
61.8	99.8	10.1	At2g25500	817088	-	F:molecular_function unknown;P:biological_process unknown;C:cytoplasm;BOPF	O.I.	C.G.	H.G.
61.5	99.8	92.5	At4g15300	827196	CYP702A2	a member of the cytochrome P450 gene family. molecular function unknown.	O.I.	C.G.	H.G.
61.5	99.8	7.7	At2g12170	815687	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
61.4	99.8	11.5	At1g66030	842916	CYP96A14P	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
61.4	99.8	10.7	At1g47990	841217	ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4)	Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
60.4	99.8	250.7	At2g37540	818330	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
60.1	99.8	13.3	At4g03740	825675	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.2	99.8	423.7	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
58.8	99.8	9.5	At4g32220	3770572	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
57.9	99.8	9.6	At1g75360	843872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB	O.I.	C.G.	H.G.
57.9	99.8	8.5	At5g45240	834560	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
57.4	99.8	15.5	At1g48640	841286	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
54.5	99.8	4.9	At2g04330	814972	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
52.2	99.8	316.1	At3g10720	820241	pectinesterase, putative	F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
52.2	99.8	9.3	At5g37110	833682	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
52.1	99.8	3.2	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
51.4	99.8	9.3	At1g72600	843592	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFOBAV	O.I.	C.G.	H.G.
51.2	99.8	10.3	At1g63600	842665	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOF	O.I.	C.G.	H.G.
50.5	99.8	4.7	At2g09960	3768104	transposable element gene	pseudogene of unknown protein	O.I.	C.G.	H.G.
48.8	99.8	16.6	At1g42980	840896	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
48.1	99.8	378.1	At5g06860	830577	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.	O.I.	C.G.	H.G.
47.9	99.8	9.0	At2g47660	819379	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.8	99.8	9.1	At2g03630	814892	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
46.5	99.8	4.7	At2g10490	3768467	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
46.1	99.8	6.9	At1g05577	837062	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
45.8	99.8	6.5	At2g06890	3768157	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
45.4	99.8	9.1	At4g13190	826933	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
45.4	99.8	7.8	At5g32610	833243	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
45.1	99.8	11.8	At4g30230	829146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
45.0	99.8	146.4	At3g16440	820892	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	O.I.	C.G.	H.G.
45.0	99.8	11.9	At4g00232	826492	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
44.8	99.8	7.7	At1g66490	842967	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
44.1	99.8	7.6	At2g42050	818805	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
43.5	99.8	8.2	At5g17720	831639	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFVA	O.I.	C.G.	H.G.
42.6	99.8	57.9	At1g50090	841432	aminotransferase class IV family protein	F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
42.4	99.8	8.2	At5g43480	834368	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.3	99.8	7.6	At2g07430	3767928	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
42.1	99.8	11.9	At3g20090	821552	CYP705A18	member of CYP705A	O.I.	C.G.	H.G.
41.9	99.8	37.5	At5g16230	831483	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
41.7	99.8	10.9	At3g46400	823790	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
41.7	99.8	6.0	At1g09360	837458	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.7	99.8	6.0	At3g27510	822373	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.5	99.8	18.0	At2g40260	818618	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
41.5	99.8	7.4	At4g19480	827689	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.5	99.8	5.4	At4g36370	829789	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.4	99.8	9.9	At3g10240	820186	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.3	99.8	8.9	At3g42080	823177	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
40.8	99.8	514.3	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
40.1	99.8	9.5	At3g42460	823249	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
39.2	99.8	59.6	At2g32620	817822	ATCSLB02	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
39.1	99.8	10.5	At1g06020	837111	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMF	O.I.	C.G.	H.G.

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GSM ID	GSM184476
Assay name	Lateral Root Cap root cells 2hr KCl control treated, biological rep1
GSE experiment	GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

Microarray experiments to specifically-expressed genes

GSM ID GSM184476 Assay name Lateral Root Cap root cells 2hr KCl control treated, biological rep1 GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root

GSM ID GSM184476

Assay name Lateral Root Cap root cells 2hr KCl control treated, biological rep1

GSE experiment GSE7631: Cell-specific nitrogen responses in the Arabidopsis root